Accession ID Name Pfam Type
PF04998 RNA polymerase Rpb1, domain 5 domain

RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 5, represents the discontinuous cleft domain that is required to from the central cleft or channel where the DNA is bound [1,2].

Pfam Range: 807-1397 DPAM-Pfam Range: 871-1057
Uniprot ID: P04050
Pfam Range: 1002-1634 DPAM-Pfam Range: 1272-1343,1459-1516
Uniprot ID: P15398
Pfam Range: 766-1317 DPAM-Pfam Range: 901-927,1220-1370
Uniprot ID: Q9PA87

References

1: Structural modules of the large subunits of RNA polymerase. Introducing archaebacterial and chloroplast split sites in the beta and beta' subunits of Escherichia coli RNA polymerase. Severinov K, Mustaev A, Kukarin A, Muzzin O, Bass I, Darst SA, Goldfarb A; J Biol Chem 1996;271:27969-27974. PMID:8910400

2: Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution. Cramer P, Bushnell DA, Kornberg RD; Science 2001;292:1863-1876. PMID:11313498