Accession ID Name Pfam Type
PF05000 RNA polymerase Rpb1, domain 4 domain

RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 4, represents the funnel domain. The funnel contain the binding site for some elongation factors [1,2].

Pfam Range: 729-835 DPAM-Pfam Range: 697-902
Uniprot ID: F4JXF9
Pfam Range: 684-790 DPAM-Pfam Range: 656-873
Uniprot ID: P41556
Pfam Range: 781-872 DPAM-Pfam Range: 745-889
Uniprot ID: Q9PQV5

References

1: Structural modules of the large subunits of RNA polymerase. Introducing archaebacterial and chloroplast split sites in the beta and beta' subunits of Escherichia coli RNA polymerase. Severinov K, Mustaev A, Kukarin A, Muzzin O, Bass I, Darst SA, Goldfarb A; J Biol Chem 1996;271:27969-27974. PMID:8910400

2: Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution. Cramer P, Bushnell DA, Kornberg RD; Science 2001;292:1863-1876. PMID:11313498