Accession ID Name Pfam Type
PF05172 Nup53/35/40-type RNA recognition motif domain

Members of this family belong to the nucleor pore complex, NPC, the only gateway between the nucleus and the cytoplasm. The NPC consists of several subcomplexes each one of which is made up of multiple copies of several individual Nup, Nic or Sec protein subunits. In yeast, this Nup or nucleoporin subunit is numbered Nup53, Nup40 in Schizo. pombe and in vertebrates as Nup35. This subunit forms part of the inner ring within the membrane and interacts directly with Nup-Ndc1, considered to be an anchor for the NPC in the pore membrane [1]. This region of the Nup is the RNA-recognition region [2].

Pfam Range: 184-270 DPAM-Pfam Range: 181-272
Uniprot ID: Q9VWS2
Pfam Range: 239-357 DPAM-Pfam Range: 248-357
Uniprot ID: Q03790
Pfam Range: 192-277 DPAM-Pfam Range: 194-286
Uniprot ID: Q09601

References

1: The nuclear pore complex has entered the atomic age. Brohawn SG, Partridge JR, Whittle JR, Schwartz TU; Structure. 2009;17:1156-1168. PMID:19748337

2: The crystal structure of mouse Nup35 reveals atypical RNP motifs and novel homodimerization of the RRM domain. Handa N, Kukimoto-Niino M, Akasaka R, Kishishita S, Murayama K, Terada T, Inoue M, Kigawa T, Kose S, Imamoto N, Tanaka A, Hayashizaki Y, Shirouzu M, Yokoyama S; J Mol Biol. 2006;363:114-124. PMID:16962612