Accession ID Name Pfam Type
PF05551 Zinc-binding loop region of homing endonuclease domain

This domain [1] is the short zinc-binding loops region of a number of much longer chain homing endonucleases. Such loops are probably stabilised by the zinc and may be viewed as small but separate domains. The common structural feature of these domains is that at least three zinc ligands lie very close to each other in the sequence and are not incorporated into regular secondary structural elements. The biological roles played by these small zinc-binding domains are presently unknown [2].

Pfam Range: 115-245 DPAM-Pfam Range: 74-245
Uniprot ID: O46338
Pfam Range: 122-252 DPAM-Pfam Range: 184-242
Uniprot ID: A7ISR6
Pfam Range: 33-165 DPAM-Pfam Range: 3-124,150-155
Uniprot ID: Q8TGE3

References

1: A novel endonuclease mechanism directly visualized for I-PpoI. Galburt EA, Chevalier B, Tang W, Jurica MS, Flick KE, Monnat RJ Jr, Stoddard BL; Nat Struct Biol. 1999;6:1096-1099. PMID:10581547

2: Structural classification of zinc fingers: survey and summary. Krishna SS, Majumdar I, Grishin NV; Nucleic Acids Res. 2003;31:532-550. PMID:12527760