Accession ID Name Pfam Type
PF06347 Bacterial SH3 domain domain

SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [1, 2]. They are found in a great variety of intracellular or membrane-associated proteins [3, 4, 5] for example, in a variety of proteins with enzymatic activity, in adaptor proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes [6]. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region. Family members include probable invasion-associated protein p60 that are conceptually translated from iap genes. The iap gene, which is regarded as a virulence-associated gene in L. monocytogenes, codes for a gene product that has murein-lytic activity and is involved in cell division [7].

Pfam Range: 51-107 DPAM-Pfam Range: 40-108
Uniprot ID: Q5NPJ0
Pfam Range: 46-102 DPAM-Pfam Range: 30-103
Uniprot ID: Q7D286
Pfam Range: 99-154 DPAM-Pfam Range: 95-152
Uniprot ID: Q6AKX0

References

1: SH2 and SH3 domains. Pawson T, Schlessingert J; Curr Biol. 1993;3:434-442. PMID:15335710

2: SH3 domains: complexity in moderation. Mayer BJ; J Cell Sci. 2001;114:1253-1263. PMID:11256992

3: SH3--an abundant protein domain in search of a function. Musacchio A, Gibson T, Lehto VP, Saraste M; FEBS Lett. 1992;307:55-61. PMID:1639195

4: Signalling through SH2 and SH3 domains. Mayer BJ, Baltimore D; Trends Cell Biol. 1993;3:8-13. PMID:14731533

5: Protein modules and signalling networks. Pawson T; Nature. 1995;373:573-580. PMID:7531822

6: SH3 domains. Molecular 'Velcro'. Morton CJ, Campbell ID; Curr Biol. 1994;4:615-617. PMID:7953536

7: Discovery of natural atypical nonhemolytic Listeria seeligeri isolates. Volokhov D, George J, Anderson C, Duvall RE, Hitchins AD; Appl Environ Microbiol. 2006;72:2439-2448. PMID:16597942