Accession ID Name Pfam Type
PF07100 Anabaena sensory rhodopsin transducer family

The family of bacterial Anabaena sensory rhodopsin transducers are likely to bind sugars or related metabolites. The entire protein is comprised of a single globular domain with an eight-stranded beta-sandwich fold. There are a few characteristics which define this beta-sandwich fold as being distinct from other so-named folds, and these are: 1) a well conserved tryptophan, usually following a polar residue, present at the start of the first strand; this tryptophan appears to be central to a hydrophobic interaction required to hold the two beta-sheets of the sandwich together, and 2) a nearly absolutely conserved asparagine located at the end of the second beta-strand, that hydrogen bonds with the backbone carbonyls of the residues 2 and 4 positions downstream from it, thereby stabilising the characteristic tight turn between strands 2 and 3 of the structure.

Pfam Range: 26-144 DPAM-Pfam Range: 24-147
Uniprot ID: D3T1J3
Pfam Range: 17-132 DPAM-Pfam Range: 12-133
Uniprot ID: E3ECN1
Pfam Range: 4-122 DPAM-Pfam Range: 1-125
Uniprot ID: Q92X64

References

1: Demonstration of a sensory rhodopsin in eubacteria. Jung KH, Trivedi VD, Spudich JL; Mol Microbiol. 2003;47:1513-1522. PMID:12622809

2: The Anabaena sensory rhodopsin transducer defines a novel superfamily of prokaryotic small-molecule binding domains. De Souza RF, Iyer LM, Aravind L; Biol Direct. 2009; [Epub ahead of print] PMID:19682383