Accession ID Name Pfam Type
PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold domain

This family is found towards the C-terminus of the DEAD-box helicases (Pfam:PF00270). In these helicases it is apparently always found in association with Pfam:PF04408. There do seem to be a couple of instances where it occurs by itself - e.g. Swiss:Q84VZ2. The structure PDB:3i4u adopts an OB-fold. helicases (Pfam:PF00270). In these helicases it is apparently always found in association with Pfam:PF04408. This C-terminal domain of the yeast helicase contains an oligonucleotide/oligosaccharide-binding (OB)-fold which seems to be placed at the entrance of the putative nucleic acid cavity. It also constitutes the binding site for the G-patch-containing domain of Pfa1p. When found on DEAH/RHA helicases, this domain is central to the regulation of the helicase activity through its binding of both RNA and G-patch domain proteins [1].

Pfam Range: 543-643 DPAM-Pfam Range: 544-635
Uniprot ID: U4PEF8
Pfam Range: 1158-1260 DPAM-Pfam Range: 1156-1256
Uniprot ID: O94536
Pfam Range: 1005-1090 DPAM-Pfam Range: 1013-1077
Uniprot ID: Q22307

References

1: Prp43p contains a processive helicase structural architecture with a specific regulatory domain. Walbott H, Mouffok S, Capeyrou R, Lebaron S, Humbert O, van Tilbeurgh H, Henry Y, Leulliot N; EMBO J. 2010;29:2194-2204. PMID:20512115

2: Aspartate-glutamate-alanine-histidine box motif (DEAH)/RNA helicase A helicases sense microbial DNA in human plasmacytoid dendritic cells. Kim T, Pazhoor S, Bao M, Zhang Z, Hanabuchi S, Facchinetti V, Bover L, Plumas J, Chaperot L, Qin J, Liu YJ; Proc Natl Acad Sci U S A. 2010; [Epub ahead of print] PMID:20696886