Accession ID Name Pfam Type
PF08167 rRNA processing/ribosome biogenesis repeat

Rix1 is a nucleoplasmic particle involved in rRNA processing/ribosome assembly [1,2]. It associates with two other proteins, Ipi1 and Ipi3, to form the RIX1 complex that allows Rea1 - the AAA ATPase - to associate with the 60S ribosomal subunit. More than 170 assembly factors are involved in the construction and maturation of yeast ribosomes, and after these factors have completed their function they need to be released from the pre-ribosomes. Rea1 induces the release of the assembly protein complex in a mechanical fashion [3]. This family is usually associated with NUC202, Pfam:PF08166.

Pfam Range: 9-204 DPAM-Pfam Range: 1-583
Uniprot ID: B6JXC9
Pfam Range: 16-227 DPAM-Pfam Range: 5-632
Uniprot ID: M4D2T3
Pfam Range: 80-290 DPAM-Pfam Range: 171-752
Uniprot ID: R9PBV3

References

1: Insights into the evolution of the nucleolus by an analysis of its protein domain repertoire. Staub E, Fiziev P, Rosenthal A, Hinzmann B; Bioessays 2004;26:567-581. PMID:15112237

2: 60S pre-ribosome formation viewed from assembly in the nucleolus until export to the cytoplasm. Nissan TA, Bassler J, Petfalski E, Tollervey D, Hurt E; EMBO J. 2002;21:5539-5547. PMID:12374754

3: The Rea1 tadpole loses its tail. Talkish J, Woolford JL Jr; Cell. 2009;138:832-834. PMID:19737511