Accession ID Name Pfam Type
PF09169 BRCA2, helical domain

Members of this family adopt a helical structure, consisting of a four-helix cluster core (alpha 1, alpha 8, alpha 9, alpha 10) and two successive beta-hairpins (beta 1 to beta 4). An approx. 50-amino acid segment that contains four short helices (alpha 2 to alpha 4), meanders around the surface of the core structure. In BRCA2, the alpha 9 and alpha 10 helices pack with BRCA-2_OB1 (Pfam:PF09103) through van der Waals contacts involving hydrophobic and aromatic residues, and also through side-chain and backbone hydrogen bonds. The domain binds the 70-amino acid DSS1 (deleted in split-hand/split foot syndrome) protein, which was originally identified as one of three genes that map to a 1.5-Mb locus deleted in an inherited developmental malformation syndrome [1].

Pfam Range: 1-180 DPAM-Pfam Range: 1-179
Uniprot ID: G3PC75
Pfam Range: 245-431 DPAM-Pfam Range: 240-430
Uniprot ID: H3DFR1
Pfam Range: 238-424 DPAM-Pfam Range: 233-425
Uniprot ID: H3AGP4

References

1: BRCA2 function in DNA binding and recombination from a BRCA2-DSS1-ssDNA structure. Yang H, Jeffrey PD, Miller J, Kinnucan E, Sun Y, Thoma NH, Zheng N, Chen PL, Lee WH, Pavletich NP; Science 2002;297:1837-1848. PMID:12228710