Accession ID Name Pfam Type
PF09369 MrfA Zn-binding domain domain

This is the C-terminal MrfA Zn+2-binding domain (MZB, also referred to as DUF1998) which contains a conserved four-cysteine signature motif. These four Cys reside in a short coil between two alpha-helices and form a metal ion-binding site [1]. This domain is frequently found at the C-terminal of ndNTPases, however, it is also found encoded in a standalone gene, downstream of putative helicase domain-encoding genes associated with bacterial anti-phage defense system DISARM. MrfA (Mitomycin repair factor A, also known as YprA in Bacillus subtilis) is a DNA helicase that supports repair of mitomycin C-induced DNA damage. MrfA homologues are widely distributed in bacteria and are also present in archaea, fungi and plants. The MrfA-homologue in yeast, Hrq1, also reduces mitomycin C sensitivity. Hrq1 has high similarity to human RecQ4 and was therefore assigned to the RecQ-like helicase family. MrfA homologues appear to be missing in Enterobacteria, however, certain pathogenic Escherichia coli and Salmonella strains harbour Z5898-like helicases with this domain [1].

Pfam Range: 499-599 DPAM-Pfam Range: 348-405,441-571,596-640
Uniprot ID: D1CIH1
Pfam Range: 757-836 DPAM-Pfam Range: 659-870
Uniprot ID: F6FTJ7
Pfam Range: 693-772 DPAM-Pfam Range: 602-803
Uniprot ID: C5BXZ3

References

1: A skipping rope translocation mechanism in a widespread family of DNA repair helicases. Roske JJ, Liu S, Loll B, Neu U, Wahl MC; Nucleic Acids Res. 2021;49:504-518. PMID:33300032