Accession ID Name Pfam Type
PF09416 RNA helicase (UPF2 interacting domain) domain

UPF1 is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. This domain contains 3 zinc binding motifs and forms interactions with another protein (UPF2) that is also involved nonsense-mediated mRNA decay (NMD) [1].

Pfam Range: 211-362 DPAM-Pfam Range: 271-367
Uniprot ID: F2U375
Pfam Range: 17-164 DPAM-Pfam Range: 76-169
Uniprot ID: W1Q6Y2
Pfam Range: 97-248 DPAM-Pfam Range: 157-248
Uniprot ID: A8Q0S3

References

1: Crystal structure of the UPF2-interacting domain of nonsense-mediated mRNA decay factor UPF1. Kadlec J, Guilligay D, Ravelli RB, Cusack S; RNA. 2006;12:1817-1824. PMID:16931876