Accession ID Name Pfam Type
PF10367 Vacuolar sorting protein 39 domain 2 domain

This domain is found on the vacuolar sorting protein Vps39 which is a component of the C-Vps complex [2]. Vps39 is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [3]. In Saccharomyces cerevisiae, Vps39 has been shown to stimulate nucleotide exchange [1]. This domain is involved in localisation and in mediating the interactions of Vps39 with Vps11 [1].

Pfam Range: 938-1046 DPAM-Pfam Range: 886-984
Uniprot ID: Q54ZD6
Pfam Range: 855-963 DPAM-Pfam Range: 731-789,844-899
Uniprot ID: J3LS74
Pfam Range: 886-994 DPAM-Pfam Range: 627-669,671-925
Uniprot ID: Q6CEZ7

References

1: New component of the vacuolar class C-Vps complex couples nucleotide exchange on the Ypt7 GTPase to SNARE-dependent docking and fusion. Wurmser AE, Sato TK, Emr SD; J Cell Biol. 2000;151:551-562. PMID:11062257

2: Vam2/Vps41p and Vam6/Vps39p are components of a protein complex on the vacuolar membranes and involved in the vacuolar assembly in the yeast Saccharomyces cerevisiae. Nakamura N, Hirata A, Ohsumi Y, Wada Y; J Biol Chem. 1997;272:11344-11349. PMID:9111041

3: Morphological classification of the yeast vacuolar protein sorting mutants: evidence for a prevacuolar compartment in class E vps mutants. Raymond CK, Howald-Stevenson I, Vater CA, Stevens TH; Mol Biol Cell. 1992;3:1389-1402. PMID:1493335