Accession ID Name Pfam Type
PF10408 Ubiquitin elongating factor core family

This is the most conserved part of the core region of Ufd2P ubiquitin elongating factor or E4, running from helix alpha-11 to alpha-38. It consists of 31 helices of variable length connected by loops of variable size forming a compact unit; the helical packing pattern of the compact unit consists of five structural repeats that resemble tandem Armadillo (ARM) repeats. This domain is involved in ubiquitination as it binds Cdc48p and escorts ubiquitinated proteins from Cdc48p to the proteasome for degradation. The core is structurally similar to the nuclear transporter protein importin-alpha. The core is associated with the U-box at the C-terminus, Pfam:PF04564, which has ligase activity.

Pfam Range: 76-709 DPAM-Pfam Range: 3-712
Uniprot ID: B7P908
Pfam Range: 271-906 DPAM-Pfam Range: 117-712,759-916
Uniprot ID: Q4DG09
Pfam Range: 307-957 DPAM-Pfam Range: 70-963
Uniprot ID: M3K352

References

1: Inaugural Article: Structure and function of the yeast U-box-containing ubiquitin ligase Ufd2p. Tu D, Li W, Ye Y, Brunger AT; Proc Natl Acad Sci U S A. 2007;104:15599-15606. PMID:17890322