Accession ID Name Pfam Type
PF10487 Nucleoporin Nup188, N-terminal repeat

Nup188 is one of the many peptides that make up the nucleoporin complex (NPC), and is found across eukaryotes [1]. The Nup188 subcomplex (Nic96p-Nup188p-Nup192p-Pom152p) is one of at least six that make up the NPC, and as such is symmetrically localised on both faces of the NPC at the nuclear end, being integrally bound to the C-terminal of Pom34p [2]. This protein folds into an extended stack of helices where the N-terminal forms a closed ring (subdivided into subdomains I-III in [3]) and the C-terminal forms a more regular, superhelical structure [3]. This entry represents the N-terminal helical repeats from Nup188.

Pfam Range: 39-475 DPAM-Pfam Range: 12-460,558-900,922-923,934-934
Uniprot ID: P52593
Pfam Range: 30-487 DPAM-Pfam Range: 1-481,526-932
Uniprot ID: F6WXT2
Pfam Range: 2-456 DPAM-Pfam Range: 1-910
Uniprot ID: A0A850X5L6

References

1: Identification of a new vertebrate nucleoporin, Nup188, with the use of a novel organelle trap assay. Miller BR, Powers M, Park M, Fischer W, Forbes DJ; Mol Biol Cell. 2000;11:3381-3396. PMID:11029043

2: The integral membrane protein Pom34p functionally links nucleoporin subcomplexes. Miao M, Ryan KJ, Wente SR; Genetics. 2006;172:1441-1457. PMID:16361228

3: Scaffold nucleoporins Nup188 and Nup192 share structural and functional properties with nuclear transport receptors. Andersen KR, Onischenko E, Tang JH, Kumar P, Chen JZ, Ulrich A, Liphardt JT, Weis K, Schwartz TU; Elife. 2013;2:e00745. PMID:23795296