Accession ID Name Pfam Type
PF11429 Colicin D domain

Colicin D is a tRNase which kills sensitive E.coli cells via a specific tRNA cleavage. It targets the four isoaccepting tRNAs for Arg and cleaves the phosphodiester bond between positions 38 and 39 at the 3' junction of the anticodon stem and the loop [1].

Pfam Range: 14-101 DPAM-Pfam Range: 1-104
Uniprot ID: S3DHC6
Pfam Range: 455-538 DPAM-Pfam Range: 443-546
Uniprot ID: B8I7J2
Pfam Range: 288-372 DPAM-Pfam Range: 272-381
Uniprot ID: K0ESY2

References

1: Relation between tRNase activity and the structure of colicin D according to X-ray crystallography. Yajima S, Nakanishi K, Takahashi K, Ogawa T, Hidaka M, Kezuka Y, Nonaka T, Ohsawa K, Masaki H; Biochem Biophys Res Commun. 2004;322:966-973. PMID:15336558