Accession ID Name Pfam Type
PF11942 Spt5 transcription elongation factor, acidic N-terminal domain

This is the very acidic N-terminal region of the early transcription elongation factor Spt5 [1]. The Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The actual function of this N-terminal domain is not known although it is dispensable for binding to Spt4 [2].

Pfam Range: 86-184 DPAM-Pfam Range: 173-276
Uniprot ID: H2XKA9
Pfam Range: 89-180 DPAM-Pfam Range: 179-274
Uniprot ID: A8P0K4
Pfam Range: 151-242 DPAM-Pfam Range: 240-336
Uniprot ID: R7YLF6

References

1: Novel domains and orthologues of eukaryotic transcription elongation factors. Ponting CP; Nucleic Acids Res. 2002;30:3643-3652. PMID:12202748

2: Characterization of the Schizosaccharomyces pombe Spt5-Spt4 complex. Schwer B, Schneider S, Pei Y, Aronova A, Shuman S; RNA. 2009; [Epub ahead of print] PMID:19460865