Accession ID Name Pfam Type
PF12220 U1 small nuclear ribonucleoprotein of 70kDa MW N terminal family

This domain is found in eukaryotes. This domain is about 90 amino acids in length. This domain is found associated with Pfam:PF00076. This domain is part of U1 snRNP, which is the pre-mRNA binding protein of the penta-snRNP spliceosome complex. It extends over a distance of 180 A from its RNA binding domain, wraps around the core domain of U1 snRNP consisting of the seven Sm proteins and finally contacts U1-C, which is crucial for 5'-splice-site recognition.

Pfam Range: 3-97 DPAM-Pfam Range: 78-198
Uniprot ID: A9URV0
Pfam Range: 3-91 DPAM-Pfam Range: 58-205
Uniprot ID: R1GGR7
Pfam Range: 3-93 DPAM-Pfam Range: 60-210
Uniprot ID: C9SPK5

References

1: Crystal structure of human spliceosomal U1 snRNP at 5.5 A resolution. Pomeranz Krummel DA, Oubridge C, Leung AK, Li J, Nagai K; Nature. 2009;458:475-480. PMID:19325628