Accession ID Name Pfam Type
PF12252 SidE phosphodiesterase (PDE) domain domain

This entry represents the phosphodiesterase (PDE) domain found in the bacterial ubiquitinating enzymes, which belong to the SidE family. This domain catalyses the conjugation of ADP-ribosylated ubiquitin (ADPR-Ub), previously synthesised by the mono-ADP-ribosyltransferase (mART) domain, to a serine residue on substrates to generate a protein-phosphoribosyl-Ub (PR-Ub) product. These pathogen proteins are secreted bacterial effector proteins, which are translocated inside the host cell using the Dot/Icm secretion system [1,2]. The SidE family of enzymes carry out ubiquitination of host cell proteins in an E1/E2-independent manner [2,3].

Pfam Range: 177-419 DPAM-Pfam Range: 156-459
Uniprot ID: A0A0W0YQD1
Pfam Range: 33-260 DPAM-Pfam Range: 13-327
Uniprot ID: Q5ZSK8
Pfam Range: 206-420 DPAM-Pfam Range: 190-461
Uniprot ID: R1CRL0

References

1: Mechanism of phosphoribosyl-ubiquitination mediated by a single Legionella effector. Akturk A, Wasilko DJ, Wu X, Liu Y, Zhang Y, Qiu J, Luo ZQ, Reiter KH, Brzovic PS, Klevit RE, Mao Y; Nature. 2018;557:729-733. PMID:29795346

2: Ubiquitination independent of E1 and E2 enzymes by bacterial effectors. Qiu J, Sheedlo MJ, Yu K, Tan Y, Nakayasu ES, Das C, Liu X, Luo ZQ; Nature. 2016;533:120-124. PMID:27049943

3: Revisiting Bacterial Ubiquitin Ligase Effectors: Weapons for Host Exploitation. Pisano A, Albano F, Vecchio E, Renna M, Scala G, Quinto I, Fiume G; Int J Mol Sci. 2018; [Epub ahead of print] PMID:30428531