Accession ID Name Pfam Type
PF16510 Phage P22-like portal protein family

The portal protein of P22 and similar Podoviridae tail phages is a dodecameric structure consisting of a hip (2), a leg(1) and a barrel(3). DNA viruses such as bacteriophages and herpesviruses deliver their genome into and out of the capsid through large proteinaceous assemblies, known as portal proteins. Domains 1 and 3 are mostly helical and form the majority of the DNA-translocating channel. Domain 2 adopts an alpha-beta-fold characterised by two sheets of eight beta-strands, which cross each other to form a beta-barrel-like structure [1].

Pfam Range: 14-681 DPAM-Pfam Range: 28-103,320-585
Uniprot ID: J7SJJ5
Pfam Range: 15-691 DPAM-Pfam Range: 3-126,326-590
Uniprot ID: C4K6U6
Pfam Range: 30-650 DPAM-Pfam Range: 40-135,325-584
Uniprot ID: E3I2Q6

References

1: Three-dimensional structure of a viral genome-delivery portal vertex. Olia AS, Prevelige PE Jr, Johnson JE, Cingolani G; Nat Struct Mol Biol. 2011;18:597-603. PMID:21499245