Accession ID Name Pfam Type
PF17538 DNA Binding Domain (C-terminal) Leafy/Floricaula domain

This family consists of various plant development proteins which are homologues of floricaula (FLO) and Leafy (LFY) proteins which are floral meristem identity proteins. Mutations in the sequences of these proteins affect flower and leaf development. LFY is a plant-specific transcription factor (TF) essential for flower development. It is one of the few master regulators of flower development, as it integrates environmental and endogenous signals to orchestrate the whole floral network. Transcription factors such as LFY, recognize short DNA motifs primarily through their DNA-binding domain. Upon binding to short stretches of DNA called cis-elements or TF binding sites (TFBS), they regulate gene expression. This entry represents the DNA binding domain found in C-terminal of LFY proteins in plants. Structure-function studies have demonstrated that LFY binds semi-palindromic 19-bp DNA elements through its highly conserved C-terminal DBD, a unique helix-turn-helix fold that by itself dimerizes on DNA [3].

Pfam Range: 221-389 DPAM-Pfam Range: 232-387
Uniprot ID: A0A022Q1S4
Pfam Range: 217-385 DPAM-Pfam Range: 226-383
Uniprot ID: I1J1B6
Pfam Range: 207-376 DPAM-Pfam Range: 215-378
Uniprot ID: W1P8B9

References

1: UNIFOLIATA regulates leaf and flower morphogenesis in pea. Hofer J, Turner L, Hellens R, Ambrose M, Matthews P, Michael A, Ellis N; Curr Biol 1997;7:581-587. PMID:9259553

2: LEAFY controls floral meristem identity in Arabidopsis. Weigel D, Alvarez J, Smyth DR, Yanofsky MF, Meyerowitz EM; Cell 1992;69:843-859. PMID:1350515

3: A SAM oligomerization domain shapes the genomic binding landscape of the LEAFY transcription factor. Sayou C, Nanao MH, Jamin M, Pose D, Thevenon E, Gregoire L, Tichtinsky G, Denay G, Ott F, Peirats Llobet M, Schmid M, Dumas R, Parcy F; Nat Commun. 2016;7:11222. PMID:27097556