Accession ID Name Pfam Type
PF18019 Cas3, HD domain domain

This HD domain is found at the N-terminus of Cas3 enzymes fused to a helicase domain. This domain is sometimes found as a separate protein. It acts as a nuclease that cleaves ssDNA.

Pfam Range: 11-225 DPAM-Pfam Range: 1-256
Uniprot ID: I3Y6A0
Pfam Range: 8-232 DPAM-Pfam Range: 1-257
Uniprot ID: I2GCH3
Pfam Range: 40-256 DPAM-Pfam Range: 12-280
Uniprot ID: C3PF92

References

1: Structural and biochemical analysis of nuclease domain of clustered regularly interspaced short palindromic repeat (CRISPR)-associated protein 3 (Cas3). Mulepati S, Bailey S; J Biol Chem. 2011;286:31896-31903. PMID:21775431

2: Molecular insights into DNA interference by CRISPR-associated nuclease-helicase Cas3. Gong B, Shin M, Sun J, Jung CH, Bolt EL, van der Oost J, Kim JS; Proc Natl Acad Sci U S A. 2014;111:16359-16364. PMID:25368186

3: Structures of CRISPR Cas3 offer mechanistic insights into Cascade-activated DNA unwinding and degradation. Huo Y, Nam KH, Ding F, Lee H, Wu L, Xiao Y, Farchione MD Jr, Zhou S, Rajashankar K, Kurinov I, Zhang R, Ke A; Nat Struct Mol Biol. 2014;21:771-777. PMID:25132177