| Accession ID | Name | Pfam Type |
|---|---|---|
| PF18055 | 26S proteasome regulatory subunit RPN6 N-terminal domain | repeat |
This is the N-terminal domain found in RPN6 proteins (26S proteasome regulatory subunit). The 26S proteasome holocomplex consists of a 28-subunit barrel-shaped core particle (CP) in the center capped at the top and bottom by 19-subunit regulatory particles (RPs). The CP forms the catalytic chamber and the RP is formed from two subcomplexes known as the lid and the base [1]. The lid comprises nine Rpn subunits in yeast (Rpn3/5/6/7/8/9/11/12/15) and the base comprises three Rpn subunits (Rpn1/2/13) and six ATPases (Rpt1-6) [2]. Phosphorylation of Rpn6 enhances proteasome ATPase activity and promotes the formation of doubly capped (30S) proteasome, hence accelerating the degradation of short-lived proteins [3].
1: Structural basis for dynamic regulation of the human 26S proteasome. Chen S, Wu J, Lu Y, Ma YB, Lee BH, Yu Z, Ouyang Q, Finley DJ, Kirschner MW, Mao Y; Proc Natl Acad Sci U S A. 2016;113:12991-12996. PMID:27791164
2: Structure of an endogenous yeast 26S proteasome reveals two major conformational states. Luan B, Huang X, Wu J, Mei Z, Wang Y, Xue X, Yan C, Wang J, Finley DJ, Shi Y, Wang F; Proc Natl Acad Sci U S A. 2016;113:2642-2647. PMID:26929360
3: Reversible phosphorylation of the 26S proteasome. Guo X, Huang X, Chen MJ; Protein Cell. 2017;8:255-272. PMID:28258412
4: Deep classification of a large cryo-EM dataset defines the conformational landscape of the 26S proteasome. Unverdorben P, Beck F, Sledz P, Schweitzer A, Pfeifer G, Plitzko JM, Baumeister W, Forster F; Proc Natl Acad Sci U S A. 2014;111:5544-5549. PMID:24706844
5: The proteasomal subunit Rpn6 is a molecular clamp holding the core and regulatory subcomplexes together. Pathare GR, Nagy I, Bohn S, Unverdorben P, Hubert A, Korner R, Nickell S, Lasker K, Sali A, Tamura T, Nishioka T, Forster F, Baumeister W, Bracher A; Proc Natl Acad Sci U S A. 2012;109:149-154. PMID:22187461