Accession ID Name Pfam Type
PF18501 Alpha helical recognition lobe domain domain

Cpf1 is an RNA-guided endonuclease of a type V CRISPR-Cas system. Cpf1 adopts a bilobed architecture consisting of an alpha-helical recognition (REC) lobe and a nuclease (NUC) lobe, with the small CRISPR RNAs (crRNAs)-target DNA heteroduplex bound to the positively charged, central channel between the two lobes. The REC lobe consists of the REC1 and REC2 domains where REC1 comprises 13 alpha helices, and REC2 comprises ten alpha helices and two beta strands that form a small antiparallel sheet [1]. This entry represents REC1 domain.

Pfam Range: 49-289 DPAM-Pfam Range: 47-298
Uniprot ID: A0A091FHB8
Pfam Range: 43-294 DPAM-Pfam Range: 41-303
Uniprot ID: A0A133Y4S8
Pfam Range: 45-290 DPAM-Pfam Range: 46-299
Uniprot ID: A0A0D6TKF1

References

1: Structural Basis for Guide RNA Processing and Seed-Dependent DNA Targeting by CRISPR-Cas12a. Swarts DC, van der Oost J, Jinek M; Mol Cell. 2017;66:221-233. PMID:28431230