Accession ID Name Pfam Type
PF20422 DHR-2, Lobe B domain

DOCK (dedicator of cytokinesis) proteins are guanine nucleotide exchange factors (GEFs) that activate some small GTPases, such as Rac or Cdc42, by exchanging bound GDP for free GTP to control cell migration, morphogenesis, and phagocytosis. These proteins share a DOCK-type C2 domain (also termed the DOCK-homology region (DHR)-1) at the N-terminal, and the DHR-2 domain (also termed the DOCKER domain) at the C-terminal. DHR-2 is the GEF catalytic domain organised into three lobes A, B and C, with the Rho-family binding site and catalytic centre generated entirely from lobes B and C. This entry represents Lobe B which adopts an unusual architecture of two antiparallel beta sheets disposed in a loosely packed orthogonal arrangement. This lobe changes its position relative to lobe C and the bound GTPase, which suggests that lobe B distinguishes between the switch 1 conformations of Rac1 and Cdc42 [2].

Pfam Range: 946-1022 DPAM-Pfam Range: 887-1040
Uniprot ID: G3P3V0
Pfam Range: 1941-2032 DPAM-Pfam Range: 1888-2052
Uniprot ID: Q55BQ8
Pfam Range: 1940-2024 DPAM-Pfam Range: 1881-2044
Uniprot ID: Q55EI2

References

1: Structure of the DOCK2-ELMO1 complex provides insights into regulation of the auto-inhibited state. Chang L, Yang J, Jo CH, Boland A, Zhang Z, McLaughlin SH, Abu-Thuraia A, Killoran RC, Smith MJ, Cote JF, Barford D; Nat Commun. 2020;11:3464. PMID:32651375

2: Structural Basis for the Dual Substrate Specificity of DOCK7 Guanine Nucleotide Exchange Factor. Kukimoto-Niino M, Tsuda K, Ihara K, Mishima-Tsumagari C, Honda K, Ohsawa N, Shirouzu M; Structure. 2019;27:741-748. PMID:30853411