Accession ID Name Pfam Type
PF20917 Asparaginal-tRNA synthetase, N-terminal domain domain

This domain is found at the N-terminal domain of the eukaryotic protein Asparaginal-tRNA synthetase (AsnRS, also known as NARS1). AsnRS is essential for protein translation and has been related to autoimmune and neurological diseases. Unlike its bacterial homologs, this protein has a conserved N-terminal extension (this entry) connected by an unstructured tether to the part of the enzyme that has homologues within eukaryotes and prokaryotes: an anticodon-binding domain (Pfam:PF01336), a hinge region (HR), and a catalytic domain (Pfam:PF00152). This domain folds into two alpha-helices and three beta-strands form a parallel/antiparallel mixed beta-sheet and has a characteristic lysine-rich helical motif that interacts with tRNA. It also shows chemokine activity through its interaction with C-C chemokine receptor 3 (CCR3) and the promotion of NRS-CCR3-mediated proinflammatory signaling [1-3].

Pfam Range: 48-141 DPAM-Pfam Range: 28-98
Uniprot ID: A0A0C3PZZ1
Pfam Range: 41-130 DPAM-Pfam Range: 18-94
Uniprot ID: A0A443QV24
Pfam Range: 526-615 DPAM-Pfam Range: 508-579
Uniprot ID: U4TWR4

References

1: A hybrid structural model of the complete Brugia malayi cytoplasmic asparaginyl-tRNA synthetase. Crepin T, Peterson F, Haertlein M, Jensen D, Wang C, Cusack S, Kron M; J Mol Biol. 2011;405:1056-1069. PMID:21134380

2: Unique N-terminal extension domain of human asparaginyl-tRNA synthetase elicits CCR3-mediated chemokine activity. Park JS, Park MC, Lee KY, Goughnour PC, Jeong SJ, Kim HS, Kim HJ, Lee BJ, Kim S, Han BW; Int J Biol Macromol. 2018;120:835-845. PMID:30171954

3: De Novo and Bi-allelic Pathogenic Variants in NARS1 Cause Neurodevelopmental Delay Due to Toxic Gain-of-Function and Partial Loss-of-Function Effects. Manole A, Efthymiou S, O'Connor E, Mendes MI, Jennings M, Maroofian R, Davagnanam I, Mankad K, Lopez MR, Salpietro V, Harripaul R, Badalato L, Walia J, Francklyn CS, Athanasiou-Fragkouli A, Sullivan R, Desai S, Baranano K, Zafar F, Rana N, Ilyas M, Horga A, Kara M, Mattioli F, Goldenberg A, Griffin H, Piton A, Henderson LB, Kara B, Aslanger AD, Raaphorst J, Pfundt R, Portier R, Shinawi M, Kirby A, Christensen KM, Wang L, Rosti RO, Paracha SA, Sarwar MT, Jenkins D, Ahmed J, Santoni FA, Ranza E, Iwaszkiewicz J, Cytrynbaum C, Weksberg R, Wentzensen IM, Guillen Sacoto MJ, Si Y, Telegrafi A, Andrews MV, Baldridge D, Gabriel H, Mohr J, Oehl-Jaschkowitz B, Debard S, Senger B, Fischer F, van Ravenwaaij C, Fock AJM, Stevens SJC, Bahler J, Nasar A, Mantovani JF, Manzur A, Sarkozy A, Smith DEC, Salomons GS, Ahmed ZM, Riazuddin S, Riazuddin S, Usmani MA, Seibt A, Ansar M, Antonarakis SE, Vincent JB, Ayub M, Grimmel M, Jelsig AM, Hjortshoj TD, Karstensen HG, Hummel M, Haack TB, Jamshidi Y, Distelmaier F, Horvath R, Gleeson JG, Becker H, Mandel JL, Koolen DA, Houlden H; Am J Hum Genet. 2020;107:311-324. PMID:32738225