Q92900 RENT1_HUMAN
Gene name: UPF1
Protein name: Regulator of nonsense transcripts 1
List of terms from Generic GO subset, which this protein is a part of:
- biological process involved in symbiotic interaction GO:0044403
- biosynthetic process GO:0009058
- catabolic process GO:0009056
- cell cycle GO:0007049
- cellular nitrogen compound metabolic process GO:0034641
- chromosome organization GO:0051276
- DNA metabolic process GO:0006259
- homeostatic process GO:0042592
- nucleobase-containing compound catabolic process GO:0034655
- nucleocytoplasmic transport GO:0006913
- protein transport GO:0015031
- response to stress GO:0006950
- translation GO:0006412
- transport GO:0006810
Table: Top 10 the most similar proteins, based on disordered regions enriched in particular amino acids. Cosine similarity calculation is described here. The whole list can be downloaded at the Download page
| # | UniProt Accession | Gene Name | Cosine Similarity | Generic GO terms |
|---|---|---|---|---|
| 1 | Q9H461 | FZD8 | 0.72876 | anatomical structure development GO:0048856 anatomical structure formation involved in morphogenesis GO:0048646 cell differentiation GO:0030154 ... |
| 2 | Q9H9H5 | MAP6D1 | 0.71685 | biosynthetic process GO:0009058 cellular protein modification process GO:0006464 cytoskeleton organization GO:0007010 ... |
| 3 | Q9NZI8 | IGF2BP1 | 0.71548 | anatomical structure development GO:0048856 biosynthetic process GO:0009058 catabolic process GO:0009056 ... |
| 4 | Q96EG3 | ZNF837 | 0.71064 | |
| 5 | O75638 | CTAG2 | 0.70658 | biosynthetic process GO:0009058 cellular nitrogen compound metabolic process GO:0034641 |
| 6 | Q96L96 | ALPK3 | 0.69872 | anatomical structure development GO:0048856 cell differentiation GO:0030154 |
| 7 | Q8TE04 | PANK1 | 0.69769 | biosynthetic process GO:0009058 cellular nitrogen compound metabolic process GO:0034641 small molecule metabolic process GO:0044281 |
| 8 | P52824 | DGKQ | 0.69609 | biosynthetic process GO:0009058 carbohydrate metabolic process GO:0005975 cellular nitrogen compound metabolic process GO:0034641 ... |
| 9 | Q10571 | MN1 | 0.69034 | anatomical structure development GO:0048856 biosynthetic process GO:0009058 cellular nitrogen compound metabolic process GO:0034641 |
| 10 | Q96NA8 | TSNARE1 | 0.6806 | membrane organization GO:0061024 protein transport GO:0015031 transport GO:0006810 ... |
20 40 60 80 100 AA: MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGAGGPGGAGAGAAAGQLDAQVGPEGILQNGAVDDSVAKTSQLL STMI: DO_DISOPRED3: DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD.DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD DO_IUPRED2A: DDDDD.DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD..DDD.DDDD.DDDDD..........D DO_SPOTD: DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD CONSENSUS: DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD CONSENSUS_MOBI: ......................................DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD.............................. RICH_[PT]: TdfTlPsqTqTPPggPggP RICH_[AG]: GpGGpGGGGAGGpGGAGAGAAAGqldAqvGpeGilqnGA RICH_[A]: AggpggAgAgAAAgqldA RICH_[G]: GGpGGpGGGGaGGpGGaGaGaaaGqldaqvGpeG RICH_[T]: TlTfldTeeaellgadT TdfTlpsqTqT RICH_[EL]: LtfLdtEEaELLgadtqgsE RICH_[FT]: FTdFTlpsqT RICH_[GP]: PsqtqtPPGGPGGPGGGGaGGPGGaG RICH_[GT]: TdfTlpsqTqTppGGpGGpG RICH_[LT]: TLTfLdTeeaeLLgadT RICH_fLPS_[A]: AgAgAAAgqldA RICH_fLPS_[F]: qgseFeFtdF RICH_fLPS_[G]: GGpGGpGGGGaGGpGGaGaG RICH_fLPS_[GA]: GGpGGpGGGGAGGpGGAGAGAAAG RICH_MOBI_[AG]: GpGGpGGGGAGGpGGAGAGAA RICH_MOBI_[A]: AggpggAgAgAA RICH_MOBI_[G]: GGpGGpGGGGaGGpGGaGaG RICH_MOBI_[GP]: PsqtqtPPGGPGGPGG RICH_fLPS_MOBI_[G]: GGpGGpGGGGaGGpGGaGaG
120 140 160 180 200 AA: AELNFEEDEEDTYYTKDLPIHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAK STMI: DO_DISOPRED3: DDDDDDDDDDDD........................................................................................ DO_IUPRED2A: DD.................................................................................................. DO_SPOTD: DDDDDDDDDDDDD....................................................................................... CONSENSUS: DDDDDDDDDDDD........................................................................................ CONSENSUS_MOBI: ..............D.....................................................................................
220 240 260 280 300 AA: ADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAY STMI: DO_DISOPRED3: ..............................................................................D.....D............... DO_IUPRED2A: ..............................................................................DDDD.................. DO_SPOTD: .................................................................................................... CONSENSUS: ..............................................................................D..................... CONSENSUS_MOBI: ................................................................................DDDDD...............
320 340 360 380 400 AA: QYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVIIWLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGD STMI: DO_DISOPRED3: .................................................................................................... DO_IUPRED2A: .................................................................................................... DO_SPOTD: .................................................................................................... CONSENSUS: .................................................................................................... CONSENSUS_MOBI: ....................................................DDDDDDD.........................................
420 440 460 480 500 AA: EIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSL STMI: DO_DISOPRED3: .................................................................................................... DO_IUPRED2A: .................................................................................................... DO_SPOTD: .................................................................................................... CONSENSUS: .................................................................................................... CONSENSUS_MOBI: ....................................................................................................
520 540 560 580 600 AA: IQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSS STMI: DO_DISOPRED3: .................................................................................................... DO_IUPRED2A: ....D.............................................................................DDDDDDDD.DDDD..... DO_SPOTD: .................................................................................................... CONSENSUS: .................................................................................................... CONSENSUS_MOBI: ....................................................................................................
620 640 660 680 700 AA: ADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLV STMI: DO_DISOPRED3: .................................................................................................... DO_IUPRED2A: .DD................................................................................................. DO_SPOTD: .................................................................................................... CONSENSUS: .................................................................................................... CONSENSUS_MOBI: ....................................................................................................
720 740 760 780 800 AA: VLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQ STMI: DO_DISOPRED3: ..................................................................D...DD............................ DO_IUPRED2A: .................................................................................................... DO_SPOTD: .................................................................................................... CONSENSUS: .................................................................................................... CONSENSUS_MOBI: ....................................................................................................
820 840 860 880 900 AA: IGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLL STMI: DO_DISOPRED3: .................................................................................................... DO_IUPRED2A: .................................................................................................... DO_SPOTD: .................................................................................................... CONSENSUS: .................................................................................................... CONSENSUS_MOBI: ....................................................................................................
920 940 960 980 1000 AA: NYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSSMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVM STMI: DO_DISOPRED3: ........................DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD DO_IUPRED2A: ........................................................DDD....DDDDDDDD..DDD......D................. DO_SPOTD: ...................DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD CONSENSUS: ........................DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD CONSENSUS_MOBI: .................................................................................................... RICH_[AI]: AmydAreAII RICH_[I]: IgmIsagpshvaamnIpI RICH_[M]: MnipipfnlvM RICH_[P]: PiPfnlvm RICH_[SY]: SvYdrSSqgrpSSmY RICH_[FP]: PFnlvm RICH_[IM]: MnIpIpfnlvM RICH_[IP]: IPIPfnlvm RICH_[MP]: MniPiPfnlvM RICH_fLPS_[P]: iPiPfnlvm
1020 1040 1060 1080 1100 AA: PPMPPPGYFGQANGPAAGRGTPKGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKS STMI: DO_DISOPRED3: DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD DO_IUPRED2A: ..D.DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD.DD DO_SPOTD: DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD CONSENSUS: DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD CONSENSUS_MOBI: ........DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD..............DDDDDDDDDDDDDDDDDDDDDDDD.... RICH_[QS]: SmSQpSQmSQpglSQpelSQ RICH_[AG]: GqAnGpAAGrG RICH_[D]: DsylgDefks RICH_[G]: GyfGqanGpaaGrGtpkGktGrGGrqknrfGlpG RICH_[M]: ppM RICH_[P]: PPmPPPgyfgqangP RICH_[Q]: QtnlpnsQasQdvasQpfsQgaltQ QpsQmsQpglsQpelsQ RICH_[R]: RgtpkgktgRggRqknR RICH_[S]: SmSqpSqmSqpglSqpelS RICH_[FP]: PPmPPPgyF RICH_[GP]: PPmPPPGyfGqanGPaaGrGtPkG RICH_[GR]: GRGtpkGktGRGGRqknRfG RICH_[IM]: ppM RICH_[IP]: PPmPPP RICH_[MP]: PPMPPP RICH_[MQ]: QgyisMsQpsQMsQpglsQ RICH_fLPS_[P]: PPmPPP RICH_fLPS_[G]: GyfGqanGpaaGrGtpkGktGrGG RICH_MOBI_[QS]: SQpSQmSQpglSQpelSQdS RICH_MOBI_[AG]: GqAnGpAAGrG RICH_MOBI_[G]: GqanGpaaGrGtpkGktGrGGrqknrfGlpG RICH_MOBI_[N]: NrfglpgpsqtNlpN RICH_MOBI_[Q]: QtnlpnsQasQdvasQ QpsQmsQpglsQpelsQ RICH_MOBI_[R]: RgtpkgktgRggRqknR RICH_MOBI_[GR]: GRGtpkGktGRGGRqknRfG RICH_MOBI_[LQ]: QpgLsQpeLsQdsyL
1120 AA: QIDVALSQDSTYQGERAYQHGGVTGLSQY STMI: DO_DISOPRED3: DDDDDDDDDDDDDDDDDDDDDDDDDDDDD DO_IUPRED2A: D..DDDDDDDDDDDDDDDDDDDDDD...D DO_SPOTD: DDDDDDDDDDDDDDDDDDDDDDDDDDDDD CONSENSUS: DDDDDDDDDDDDDDDDDDDDDDDDDDDDD CONSENSUS_MOBI: .........DDDDDDDDDDDDDDDDDDDD RICH_[QY]: QidvalsQdstYQgeraYQ RICH_[D]: qiDvalsqD RICH_[Q]: QidvalsQdstyQgerayQ RICH_[GY]: YqGeraYqhGGvtGlsqY RICH_MOBI_[GY]: YqGeraYqhGGvtGlsqY