Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query:T517_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
Click the hit # to scoll down to alignments.
| HIT # |
SCOPid | PROTEIN | SCOP SUPERFAMILY | SCOP FOLD | SCOP CLASS |
Probability | E-value | Raw Score |
|---|---|---|---|---|---|---|---|---|
| SCOP domains with score better than the threshold (Probability > 0.9) | ||||||||
| 1 | d1jx7a_ | Hypothetical protein YchN | YchN-like | YchN-like | α/β | 0.99 | 0.00 | 126.9 |
| 2 | d1l1sa_ | Hypothetical protein MTH1491 | YchN-like | YchN-like | α/β | 0.96 | 0.00 | 65.7 |
| SCOP domains with score worse than the threshold (Probability ≤ 0.9) | ||||||||
| 3 | d1k92a1 | Argininosuccinate synthetase, N-terminal domain | Adenine nucleotide alpha hydrolases-like | Adenine nucleotide alpha hydrolase-like | α/β | 0.34 | 0.00 | 21.5 |
| 4 | d1vlia2 | Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain | Aldolase | TIM beta/alpha-barrel | α/β | 0.28 | 0.00 | 17.6 |
| 5 | d1ccwa_ | Glutamate mutase, small subunit | Cobalamin (vitamin B12)-binding domain | Flavodoxin-like | α/β | 0.28 | 0.00 | 17.9 |
| 6 | d1vmea1 | ROO-like flavoprotein TM0755, C-terminal domain | Flavoproteins | Flavodoxin-like | α/β | 0.28 | 0.00 | 20.2 |
| 7 | d1h0oa_ | Ribonucleotide reductase R2 | Ferritin-like | Ferritin-like | All α | 0.24 | 0.00 | 27.9 |
| 8 | d1a62a1 | Rho termination factor, N-terminal domain | Rho termination factor, N-terminal domain | LEM/SAP HeH motif | All α | 0.23 | 0.00 | 22.5 |
| 9 | d1poxa3 | Pyruvate oxidase | Thiamin diphosphate-binding fold (THDP-binding) | Thiamin diphosphate-binding fold (THDP-binding) | α/β | 0.22 | 0.00 | 17.7 |
| 10 | d3grsa2 | Glutathione reductase | FAD/NAD(P)-binding domain | FAD/NAD(P)-binding domain | α/β | 0.20 | 0.00 | 17.8 |
query 5 KKMNLLLFSG--DYDKALASLIIANAAREMEI--EVTIFCAFWGLLLLRDPEKASQEDKS 60
:::::::::: :::::::::::::::::::: :::::::::::::::::::::
d1jx7a_ 2 QKIVIVANGAPYGSESLFNSLRLAIALREQESNLDLRLFLMSDAVTAGLRGQKPG----- 56
query 61 LYEQAFSSLTPREAEELPLSKMNLGGIGKKMLLEMMKEEKAPKLSDLLSGARKKEVKFYA 120
:::::::::::::::::::::
d1jx7a_ 57 ---------------------------------------EGYNIQQMLEILTAQNVPVKL 77
query 121 XQLSVEIMGFKKEELFPEVQIMDVKEYLKNALESDLQL 158
::::::::::::::::::::::::::::::::::::::
d1jx7a_ 78 CKTCTDGRGISTLPLIDGVEIGTLVELAQWTLSADKVL 115
query 6 KMNLLLFSGDYDKALASLIIAN--AAREMEIEVTIFCAFWGLLLLRDPEKASQEDKSLYE 63
:::::::::::::::::::::: ::::::::::::::::::::::::
d1l1sa_ 3 RVVFHIDEDDESRVLLLISNVRNLMADLESVRIEVVAYSMGVNVLRRD------------ 50
query 64 QAFSSLTPREAEELPLSKMNLGGIGKKMLLEMMKEEKAPKLSDLLSGARKKEVKFYAXQL 123
::::::::::::::::::::::
d1l1sa_ 51 --------------------------------------SEYSGDVSELTGQGVRFCACSN 72
query 124 SVEIMGFKKEELFPEVQI--MDVKEYLKNALES 154
:::::::::::::::::: :::::::::::::
d1l1sa_ 73 TLRASGMDGDDLLEGVDVVSSGVGHIVRRQTEG 105
query 2 MENKKMNLLLFSGDYDKALASLIIANAAREMEIEVTIFCAFWGL 45
:::::::::::::::: ::::::::::::::::::::::::
d1k92a1 7 LPVGQRIGIAFSGGLD----TSAALLWMRQKGAVPYAYTANLGQ 46
query 2 MENKKMNLLL--FSGDYDKALASLIIANAAREMEIEVTIFCAFWGLLLLRDPEKASQEDK 59
:::::::::: ::::::::::::::::::::::::::::::::::::::::::::
d1vlia2 11 GKDAPVFIIAEAGINHDGKLDQAFALIDAAAEAGADAVKFQMFQADRMYQKDPDVS---- 66
query 60 SLYEQAFSSLTPREAEELPLSKMNLGGIGKKMLLEMMKEE--KAPKLSDLLSGARKKEVK 117
:::::::: ::::::::::::::::::
d1vlia2 67 --------------------------------IFSLVQSMEMPAEWILPLLDYCREKQVI 94
query 118 FYAXQLSVEIMGFKKEELFPEVQIM 142
:::::::::::::::::::::::::
d1vlia2 95 FLSTVCDEGSADLLQSTSPSAFKIA 119
query 2 MENKKMNLLLFSGDYDKALASLIIANAAREMEIEVTIFCAFWGLLLLRDPEKASQEDKSL 61
:: ::::::::::::::::::::::::::::::::::: ::::
d1ccwa_ 1 ME-KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNI----GVLS-------------- 41
query 62 YEQAFSSLTPREAEELPLSKMNLGGIGKKMLLEMMKEEKAPKLSDLLSGARKKEVKFYAX 121
:::::::::::::::::::
d1ccwa_ 42 -----------------------------------------PQELFIKAAIETKADAILV 60
query 122 QLSV 125
::::
d1ccwa_ 61 SSLY 64
query 3 ENKKMNLLLFSGDYDKALASLIIANAAREMEIEVTIF 39
:::::::::::::::::::::::::::::::::::::
d1vmea1 2 KKGKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVY 38
query 87 IGKKMLLEMMKEEKAPKLSDLLSGARKKEVKFYAXQLSVEIMGFKKEELFPEVQI 141
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
d1h0oa_ 209 FACLMFKHLVHKPAEQRVREIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEF 263
query 96 MKEEKAPKLSDLLSGARKKEVK 117
::::::::::::::::::::::
d1a62a1 3 LTELKNTPVSELITLGENMGLE 24
query 25 IANAAREMEIEVTIFCAFWGL-LLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKMN 83
::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::
d1poxa3 137 FSKIADGVHMQAFRVNKIEQLPDVFEQAKAIAQHEPVLIDAVITGDRPLPAEKLRLDSAM 196
query 84 LGGIGKKMLLEMMKEEKAPKLSDLLSG 110
:::::::::::::::::::::::::::
d1poxa3 197 SSAADIEAFKQRYEAQDLQPLSTYLKQ 223
query 20 LASLIIANAAREMEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPL 79
::::::::::::::::::::::: ::
d3grsa2 32 YIAVEMAGILSALGSKTSLMIRH-----------------------------------DK 56
query 80 SKMNLGGIGKKMLLEMMKEEKA 101
::::::::::::::::::::::
d3grsa2 57 VLRSFDSMISTNCTEELENAGV 78