HHsearch Result

Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets. J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity. Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu


Query:542d3.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL


Summary of Hits

Click the hit # to scoll down to alignments.

HIT
#
SCOPid PROTEIN SCOP SUPERFAMILY SCOP FOLD SCOP
CLASS
Probability E-value Raw Score
SCOP domains with score better than the threshold (Probability > 0.9)
1 d1kqpa_ NH3-​dependent NAD+-​synthetaseAdenine nucleotide alpha hydrolases-​likeAdenine nucleotide alpha hydrolase-​likeα/β0.940.0052.1
SCOP domains with score worse than the threshold (Probability ≤ 0.9)
2 d1dv0a_ DNA repair protein Hhr23aUBA-​likeRuvA C-​terminal domain-​likeAll α0.330.0025.8
3 d1vjja4 Transglutaminase catalytic domainCysteine proteinasesCysteine proteinasesα+β0.310.0025.8
4 d1ifya_ DNA repair protein Hhr23aUBA-​likeRuvA C-​terminal domain-​likeAll α0.240.0023.3
5 d1r7ra3 Membrane fusion ATPase VCP/​p97P-​loop containing nucleoside triphosphate hydrolasesP-​loop containing nucleoside triphosphate hydrolasesα/β0.200.0017.6

d1kqpa_ NH3-​dependent NAD+-​synthetase

Probability: 0.94 E-value:0.00

query          2 DYPVLDAILELYVDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGT     54
                 ::::::::::::             ::::::::::::::::::::: ::::::
d1kqpa_      227 SYDEIDDYLEGK-------------EVSAKVSEALEKRYSMTEHKR-QVPASM    265


d1dv0a_ DNA repair protein Hhr23a

Probability: 0.33 E-value:0.00

query         15 DRDTGADAIVAAGYDRELVVKTLRMVDTAE     44
                 ::::::::::::::::::::::::::::::
d1dv0a_        1 QEKEAIERLKALGFPESLVIQAYFACEKNE     30


d1vjja4 Transglutaminase catalytic domain

Probability: 0.31 E-value:0.00

query         52 PGTKISAKGFGKDRRLPITNRWR     74
                 :::::::::::::::::::::::
d1vjja4      278 IGRYISTKAVGSNARMDVTDKYK    300


d1ifya_ DNA repair protein Hhr23a

Probability: 0.24 E-value:0.00

query         15 DRDTGADAIVAAGYDRELVVKTLRMVDTA     43
                 :::::::::::::::::::::::::::::
d1ifya_        7 EYETMLTEIMSMGYERERVVAALRASYNN     35


d1r7ra3 Membrane fusion ATPase VCP/​p97

Probability: 0.20 E-value:0.00

query          1 PDYPVLDAILELYV-DRDTGADAIVA--AGYDRELVVKTLRMVDTAEYKR     47
                 :::::::::::::: :::::::::::  ::::::::::::::::::::::
d1r7ra3      172 PDEKSRVAILKANLRKSDVDLEFLAKMTNGFSGADLTEICQRACKLAIRE    221