HHsearch Result

Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets. J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity. Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu

Query:T0611_Ad2.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL

Summary of Hits

Click the hit # to scoll down to alignments.

HIT #	SCOPid	PROTEIN	SCOP SUPERFAMILY	SCOP FOLD	SCOP CLASS	Probability	E-value	Raw Score
SCOP domains with score worse than the threshold (Probability ≤ 0.9)
1	d1pb6a2	Hypothetical transcriptional regulator YcdC	Tetracyclin repressor-like, C-terminal domain	Tetracyclin repressor-like, C-terminal domain	All α	0.84	0.00	30.8
2	d1vi0a2	Hypothetical transcriptional regulator YsiA	Tetracyclin repressor-like, C-terminal domain	Tetracyclin repressor-like, C-terminal domain	All α	0.79	0.00	28.3
3	d1rkta2	Hypothetical transcriptional regulator YfiR	Tetracyclin repressor-like, C-terminal domain	Tetracyclin repressor-like, C-terminal domain	All α	0.76	0.00	28.0
4	d1t56a2	Ethr repressor	Tetracyclin repressor-like, C-terminal domain	Tetracyclin repressor-like, C-terminal domain	All α	0.73	0.00	23.6
5	d1e7ua1	Phoshoinositide 3-kinase (PI3K) helical domain	ARM repeat	alpha-alpha superhelix	All α	0.63	0.00	21.8
6	d1bg1a1	STAT3b	STAT	STAT-like	All α	0.41	0.00	23.9
7	d1f5na1	Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain	Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain	Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain	All α	0.38	0.00	19.4
8	d1fioa_	Sso1	t-snare proteins	STAT-like	All α	0.32	0.02	14.1
9	d1ui5a2	A-factor receptor homolog CprB	Tetracyclin repressor-like, C-terminal domain	Tetracyclin repressor-like, C-terminal domain	All α	0.32	0.01	15.2
10	d1ivsa2	Valyl-tRNA synthetase (ValRS)	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	All α	0.29	0.01	16.5
11	d1osha_	Bile acid receptor FXR	Nuclear receptor ligand-binding domain	Nuclear receptor ligand-binding domain	All α	0.28	0.01	17.7
12	d1j30a_	Hypothetical rubrerythrin	Ferritin-like	Ferritin-like	All α	0.27	0.25	6.6
13	d1s4bp_	Neurolysin (endopeptidase 24.16, thimet oligopeptidase)	Metalloproteases ((zincins(), catalytic domain	Zincin-like	α+β	0.27	0.10	9.4
14	d1a0pa1	Recombinase XerD	lambda integrase-like, N-terminal domain	SAM domain-like	All α	0.25	0.00	18.6
15	d1hu3a_	Eukaryotic initiation factor eIF4G	ARM repeat	alpha-alpha superhelix	All α	0.24	0.21	7.2
16	d1n97a_	Cyp175a1	Cytochrome P450	Cytochrome P450	All α	0.23	0.18	7.8
17	d1ufaa2	Hypothetical protein TT1467, N-terminal domain	Glycoside hydrolase/deacetylase	7-stranded beta/alpha barrel	α/β	0.23	0.01	17.9
18	d1im8a_	Hypothetical protein HI0319 (YecO)	S-adenosyl-L-methionine-dependent methyltransferases	S-adenosyl-L-methionine-dependent methyltransferases	α/β	0.22	0.01	16.3
19	d1t33a2	Putative transcriptional repressor YbiH	Tetracyclin repressor-like, C-terminal domain	Tetracyclin repressor-like, C-terminal domain	All α	0.22	0.01	16.2
20	d1h3na1	Leucyl-tRNA synthetase (LeuRS)	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	All α	0.22	0.02	13.9
21	d1ft9a2	CO-sensing protein CooA, N-terminal domain	cAMP-binding domain-like	Double-stranded beta-helix	All β	0.21	0.00	19.4
22	d1quua1	alpha-actinin	Spectrin repeat	Spectrin repeat-like	All α	0.21	0.08	10.3
23	d1odoa_	Cyp154a1 monooxygenase	Cytochrome P450	Cytochrome P450	All α	0.20	0.14	8.4

d1pb6a2 Hypothetical transcriptional regulator YcdC

Probability: 0.84 E-value:0.00

query         22 LEDMTFYLESVFDGLWSYRFFHRD-LEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLAD     80
                 :::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::
d1pb6a2        5 LAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVK     64

query         81 AGIIQPQPEDLRSAMSLNVWLVITNWMAFLKT---------AHLTELKQGIYQVLTLEVP    131
                 :::::::::::   ::::::::::::::::::         :::::::::::::::::::
d1pb6a2       65 SGKLAPIDPQH---LIFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIE    121

query        132 YLTPE    136
                 :::::
d1pb6a2      122 GIRPR    126

d1vi0a2 Hypothetical transcriptional regulator YsiA

Probability: 0.79 E-value:0.00

query         23 EDMTFYLESVFDGLWSYRFFHRDL-EYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADA     81
                 :::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::
d1vi0a2        4 EKLALVISKHFSLLAGDHNLAIVTQLELRQSNLELRQKINEILKGYLNILDGILTEGIQS     63

query         82 GIIQP--QPEDLRSAMSLNVWLVITNWMAFLKTAHLTELKQGIYQVL    126
                 :::::  ::::::::::::::::::::::::::::::::::::::::
d1vi0a2       64 GEIKEGLDVRLARQMIFGTIDETVTTWVMNDQKYDLVALSNSVLELL    110

d1rkta2 Hypothetical transcriptional regulator YfiR

Probability: 0.76 E-value:0.00

query         25 MTFYLESVFDG--------LWSYRFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFA     76
                 :::::::::::        :::::::::::::::::::::::::::::::::::::::::
d1rkta2        2 VWASISSYLDELTEGLRDVADTLAPVQFEYLVTAWRNEERRQYLEKRYDLFVERFSRLLQ     61

query         77 KLADAGIIQPQPEDLRSAMSLNVWLVITNW--MAFLKTAHLTELKQGIYQVLTLEVPYLT    134
                 ::::::::::::::: : ::::::::::::  ::::::::::::::::::::::::::::
d1rkta2       62 KGIDQGEFQPVQPLA-T-IAKFFLNMNDGIIQNALYFDEEKADVSGLAESAKLYLKTVLQ    119

query        135 PE    136
                 ::
d1rkta2      120 AD    121

d1t56a2 Ethr repressor

Probability: 0.73 E-value:0.00

query         23 EDMTFYLESVFDGLWSYRFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAG     82
                 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
d1t56a2        7 NMWRTGINVFFETFGSHKAVTRAGQAARATSVEVAELWSTFMQKWIAYTAAVIDAERDRG     66

query         83 IIQPQPEDLRSAMSLNVWLVITNWMAFLKT----AHLTELKQGIYQVL    126
                 :::::::::::::: :::::::::::::::    ::::::::::::::
d1t56a2       67 AAPRTLPAHELATA-LNLMNERTLFASFAGEQPSVPEARVLDTLVHIW    113

d1e7ua1 Phoshoinositide 3-kinase (PI3K) helical domain

Probability: 0.63 E-value:0.00

query          2 QEYEKLVDYYLDIPEDRPITLEDMTFYLESVFDGLWSYRFFHRDLEYLLDS--------D     53
                 ::::::::::::::::::::::::        :::::::::::::::::::        :
d1e7ua1       20 NQLRKQLEAIIATDPLNPLTAEDK--------ELLWHFRYESLKDPKAYPKLFSSVKWGQ     71

query         54 PRLRQDYREFTNRC---------LAAINRIFAKLADAGII---------QPQPEDLRSAM     95
                 ::::::::::::::         :::::::::::::::::         :::::::::::
d1e7ua1       72 QEIVAKTYQLLAKREVWDQSALDVGLTMQLLDCNFSDENVRAIAVQKLESLEDDDVLHYL    131

query         96 SLNVWLVI------TNWMAFLKTAHLTELKQGIYQVLTLEVP-YLTPEYRERVLALREKY    148
                 ::::::::      :::::::::::::::::::::::::::: :::::::::::::::::
d1e7ua1      132 LQLVQAVKFEPYHDSALARFLLKRGLRNKRIGHFLFWFLRSEIAQSRHYQQRFAVILEAY    191

d1bg1a1 STAT3b

Probability: 0.41 E-value:0.00

query          5 EKLVDYYLDIPEDRPITLEDMTFYLESVFDGLWSYRFFHRDLEYLLDSDPRLRQDYREFT     64
                 :::::::::::::   ::::::::::::::::::::::::::::::::::::::::::::
d1bg1a1      102 RQQIACIGGPPNI---CLDRLENWITSLAESQLQTRQQIKKLEELQQKVSYKGDPIVQHR    158

query         65 NRCLAAINRIFAKLADAGI     83
                 :::::::::::::::::::
d1bg1a1      159 PMLEERIVELFRNLMKSAF    177

d1f5na1 Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain

Probability: 0.38 E-value:0.00

query          1 FQEYEKLVDYYLDIPEDRPITLEDMTFYLES----VFDGLWSYRFFHRDLEYLLDSDPRL     56
                 :::::::::::::::::   :::::::::::    :::::::::::::::::::::::::
d1f5na1       49 IAHYEQQMGQKVQLPTE---SLQELLDLHRDSEREAIEVFIRSSFKDVDHLFQKELAAQL    105

query         57 RQDYREFTNRCLAAINRIFAKLAD     80
                 ::::::::::::::::::::::::
d1f5na1      106 EKKRDDFCKQNQEASSDRCSGLLQ    129

d1fioa_ Sso1

Probability: 0.32 E-value:0.02

query         46 LEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPEDLRSAMSL--------     97
                 ::::::::::::::::::::::::::::::::::::::::::::::::::::        
d1fioa_       86 AENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQPEATEDEVEAAISDVGGQQIFS    145

query         98 NVWLVITNWMAFLKTAHLT--ELKQGIYQVLTLEV    130
                 :::::::::::::::::::  ::::::::::::::
d1fioa_      146 QALLEAKTALAEVQARHQELLKLEKSMAELTQLFN    180

d1ui5a2 A-factor receptor homolog CprB

Probability: 0.32 E-value:0.01

query         46 LEYLLDSDPRLRQDYREF------------TNRCLAAINRIFAKLADAGIIQPQPEDLRS     93
                 ::::::::::::::::::            :::::::::::::::::::::::::::: :
d1ui5a2       14 MARLCVQGPVLRAGLRLATAGVPVRPLPHPFTEWREIATSRLLDAVRQSDVHQDIDVD-S     72

query         94 AMSLNVWLVITNWMAFLKTAHLTELKQGIYQVLTLEVPYLTPEYRERVLA    143
                     :::::::::::::::::::::::    :::::::::::::::::::
d1ui5a2       73 ----VAHTLVCSVVGTRVVREPRRLAE----MWYILIRGMVPVTRRARYV    114

d1ivsa2 Valyl-tRNA synthetase (ValRS)

Probability: 0.29 E-value:0.01

query         36 LWS-YRFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPEDLRSA     94
                 ::: ::::::::::::::::::::::::::::::::::::::::::     :::::::::
d1ivsa2        4 LYNAARFVLLSREGFQAKEDTPTLADRFMRSRLSRGVEEITALYEA-----LDLAQAARE     58

query         95 MSLNVWLVITNW-----------MAFLKTAHLTELKQGIYQVLTLEVPYLTPEYRERV    141
                 ::::::::::::           :::::::::::::::::::::::::::::::::::
d1ivsa2       59 VYELVWSEFCDWYLEAAKPALKAGNAHTLRTLEEVLAVLLKLLHPMMPFLTSELYQAL    116

d1osha_ Bile acid receptor FXR

Probability: 0.28 E-value:0.01

query         13 DIPEDRPITLEDMTFYLESVFDGLWSYRFFHRDLEYLLDSDPRLRQDYREFTNRCLAAIN     72
                 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
d1osha_       49 KLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLPSGHSDLLEERIRNSGISDEYIT    108

query         73 RIFAKLADAGIIQPQPEDLRSAMSLNVWLVITNWMAFLKTAHLTELKQGIYQVLTLEVPY    132
                 :::::::::::::::::::  :::::::::::::::::::::::::::::::::::::::
d1osha_      109 PMFSFYKSIGELKMTQEEY--ALLTAIVILSPDRQYIKDREAVEKLQEPLLDVLQKLCKI    166

query        133 LTPEYRERVLAL    144
                 ::::::::::::
d1osha_      167 HQPENPQHFACL    178

d1j30a_ Hypothetical rubrerythrin

Probability: 0.27 E-value:0.25

query         21 TLEDMTFYLESVFDGLWSYRFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLAD     80
                 ::::::::::::::::::::::::::::  ::::::::::::::::::::::::::::::
d1j30a_        7 TAENLKQGFIGESMANRRYLYFAKRADE--EGYPEIAGLLRSIAEGETAHAFGHLDFIRQ     64

query         81 AGIIQPQPEDLRSAMSLNVWLVITNWMAFLKTAHLTELKQGIYQVLTLEVPYLTPEYRER    140
                 ::::::::::::::::::::        ::::::::::::::::::::::::::::::::
d1j30a_       65 GGLTDPATDKPIGTLEQMIE--------SAIAGETYEWTQMYPGFAKVAREEGFPEVAEW    116

query        141 VLALRE    146
                 ::::::
d1j30a_      117 FETLAR    122

d1s4bp_ Neurolysin (endopeptidase 24.16, thimet oligopeptidase)

Probability: 0.27 E-value:0.10

query          2 QEYEKLVDYYLDIPEDRPITLEDMTFYLESVFDGLWSYRFFHRDLEYLLDSDP------R     55
                 :::::::::::::::::: ::::::::::::::::::::::::::::::::::      :
d1s4bp_       19 EQTKRVYDQVGTQEFEDV-SYESTLKALADVEVTYTVQRNILDFPQHVSPSKDIRTASTE     77

query         56 LRQDYREFTNRC--------------------------LAAINRIFAKLADAGIIQPQPE     89
                 ::::::::::::                          ::::::::::::::::::::::
d1s4bp_       78 ADKKLSEFDVEMSMREDVYQRIVWLQEKVQKDSLRPEAARYLERLIKLGRRNGLHLPRET    137

query         90 DLRSAMSLNVWLVITNWMAFLK    111
                 :::  :::::::::::::::::
d1s4bp_      138 QEN--IKRIKKKLSLLCIDFNK    157

d1a0pa1 Recombinase XerD

Probability: 0.25 E-value:0.00

query          5 EKLVDYYLD-IPEDRPITLEDMTFYLESVFDGLWSYRFFHRDLEYLLDSDPRLRQDYREF     63
                 ::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
d1a0pa1        3 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLS     62

query         64 TNRCLAAINRIFAKLADAGIIQPQPED     90
                 :::::::::::::::::::::::::::
d1a0pa1       63 SARLLSAVRRLFQYLYREKFREDDPSA     89

d1hu3a_ Eukaryotic initiation factor eIF4G

Probability: 0.24 E-value:0.21

query          2 QEYEKLVDYYLDIPEDRPITLEDMTFYLESVFDGLWSYRFFHRDLEYLLDSD--------     53
                 ::::::::::::::::::::::::::::::::::::::::::::::::::::        
d1hu3a_       25 QMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPNFRKL     84

query         54 ------PRLRQDYREFTNRCLAAI--NRIFAKLADAGII--------------QPQPEDL     91
                       ::::::::::::::::::  :::::::::::::              :::::::
d1hu3a_       85 LLNRCQKEFEKDKAAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDEESL    144

query         92 RSAMSLNVWLVITNWMAFLKTAHLTELKQGIYQVLTLEVPYLTPEYRERVLALRE    146
                 : :::::::::::::::::::::::::::::::::::  ::::::::::::::::
d1hu3a_      145 E-CLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIVKE--RKTSSRIRFMLQDVID    196

d1n97a_ Cyp175a1

Probability: 0.23 E-value:0.18

query          2 QEYEKLVDYYLDIPEDRPITLEDMTFYL------ESVFDG---LWSYRFFHRDLEYLLDS     52
                 ::::::::::::::::::::::::::::      ::::::   :::::::::::::::::
d1n97a_      108 EAMEEEARAFFGEWRGEERDLDHEMLALSLRLLGRALFGKPLSPSLAEHALKALDRIMAQ    167

query         53 DPRLRQDY-----REFTNRCLAAINRIFAKLADAGIIQPQPEDLRSAMSLNVWL------    101
                 ::::::::     :::::::::::::::::::::::::::::::::::::::::      
d1n97a_      168 TRSPLALLDLAAEARFRKDRGALYREAEALIVHPPLSHLPRERALSEAVTLLVAGHETVA    227

query        102 VITNWMAFLKTAHLTELKQGIYQVLTLEV    130
                 :::::::::::::::::::::::::::::
d1n97a_      228 SALTWSFLLLSHRPDWQKRVAESEEAALA    256

d1ufaa2 Hypothetical protein TT1467, N-terminal domain

Probability: 0.23 E-value:0.01

query         22 LEDMTFYLESVFDGLWS--YRFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLA     79
                 :::::::::::::::::  :::::::::::::::::::::::::::::::::::::::::
d1ufaa2       73 KEGFWAYAKDRLERAQGDYQRYRGTALEASARHQVAFWELTLDHFQRLSGDLVAAFRKAE    132

query         80 DAGIIQP     86
                 :::::::
d1ufaa2      133 EGGQVEL    139

d1im8a_ Hypothetical protein HI0319 (YecO)

Probability: 0.22 E-value:0.01

query         38 SYRFFHRDLEYLLDSDPRLRQDYREFT----NRCLAAINRIFAKLADAGIIQPQPEDLRS     93
                 :::::::::::::::::::::::::::    ::::::::::::::::::::::::::: :
d1im8a_       93 PVEILCNDIRHVEIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR-F    151

query         94 AMSLNVWLVITNWMAFLKTA--HLTELKQGIYQVLTLEVPYLTPEYRERVLA    143
                 ::::::::::::::::::::  ::::::::::::::::::::::::::::::
d1im8a_      152 EDTKINHLLIDLHHQFKRANGYSELEVSQKRTALENVMRTDSIETHKVRLKN    203

d1t33a2 Putative transcriptional repressor YbiH

Probability: 0.22 E-value:0.01

query          1 FQEYEKLVDYYLDIPEDRPITLEDMTFYLESVFDGLWSYRFFHRDLEYLLDSDPRLRQDY     60
                 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
d1t33a2       53 IDPLHTHLTRLVAAYTGCDANDTRMILHTHALLGEVLAFRLGKETILLRTGWPQFDEEKA    112

query         61 REFTNRCLAAINRIFAKLAD     80
                 ::::::::::::::::::::
d1t33a2      113 ELIYQTVTCHIDLILHGLTQ    132

d1h3na1 Leucyl-tRNA synthetase (LeuRS)

Probability: 0.22 E-value:0.02

query         39 YRFFHRDLEYLLD-----SDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPEDLRS     93
                 :::::::::::::     :::::::::::::::::::::::::::::     ::::::::
d1h3na1        6 YRRVAEDREALLETSGVFQAEALEGKDRELYGKLHETLKKVTEDLEA-----LRFNTAIA     60

query         94 AMSLNVWLVITNWMAFLKTAHLTELKQGIYQVLTLEVPYLTPEYRERV    141
                 ::::::::::::::::::::::::::::::::::::::::::::::::
d1h3na1       61 ALMEFLNALYEYRKDRPVTPVYRTAIRYYLQMLFPFAPHLAEELWHWF    108

d1ft9a2 CO-sensing protein CooA, N-terminal domain

Probability: 0.21 E-value:0.00

query         39 YRFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKL     78
                 ::::::::::::::::::::::::::::::::::::::::
d1ft9a2       90 RFADIRTFEQKLQTCPSMAWGLIAILGRALTSCMRTIEDL    129

d1quua1 alpha-actinin

Probability: 0.21 E-value:0.08

query         50 LDSDPRLRQDYREFTNRCLAAINRIFAKLADAGIIQPQPEDLRSAMSLNVWLVITNWMAF    109
                 ::::::::::::::::::::::::::::::::::::::::::::    ::::::::::::
d1quua1        9 LERLEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRA----LLRKHEAFESDL     64

query        110 LKTAHLTELKQGIYQVLTLEVPYLTPEYRERVLALREKYR    149
                 ::::::::::::::::::::::::::::::::::::::::
d1quua1       65 AAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWD    104

d1odoa_ Cyp154a1 monooxygenase

Probability: 0.20 E-value:0.14

query          2 QEYEKLVDYYLDIPEDRPITL-EDMTFYLESVF---------DGLWSYRFFHRDLEYLLD     51
                 ::::::::::::::::::::: :::::::::::         ::::::::::::::::::
d1odoa_      114 AMVTGLVDRLAELPAGEPVDLRQELAYPLPIAVIGHLMGVPQDRRDGFRALVDGVFDTTL    173

query         52 SDPRLRQDYREFTNRCLAAINR--------IFAKLADAGIIQPQPEDLRSAMSLNVWL--    101
                 ::::::::::::::::::::::        ::::::::::::::::::::::::::::  
d1odoa_      174 DQAEAQANTARLYEVLDQLIAAKRATPGDDMTSLLIAARDDRLSPEELRDTLLLMISAGY    233

query        102 ----VITNWMAFLKTAHLTELKQ    120
                     :::::::::::::::::::
d1odoa_      234 ETTVNVIDQAVHTLLTRPDQLAL    256