HorA Server Result

References:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets. J. Mol. Biol. 377(4): 1265-1278 link
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity. Nucleic Acids Res. 37(Web Server issue):W532-8 link
Comments and suggestions to: grishin@chop.swmed.edu


Scores:: dali daliZ gdtts tmscore rmsd AHM LBcontactA LBcontactB LHM identity blosum compass pearson
Searches:: DALI FAST TMalign HHsearch

Multiple sequence alignment
HHsearch hidden markov model

Mouse: rotate:Left; translate:Ctrl+Right; zoom:Middle

Downloads:
PDB file
PyMOL

Summary of Hits

Hits are found by three methods: Combined Score, SVM model and HHsearch. Hits are ordered by the combined score (Comb score). The combined scores is a similarity measure from sequence and structural similarities. A higher combined score (Comb score) indicates a higher probablity that the hit is homologous to the query.

Click the hit # to scroll down to alignments. Download tab-delimited summary table.

Hit #	SCOP Id	Protein Name	SCOP Superfamily	SCOP Fold	SCOP Class	Comb score	SVM score	HH prob	DALI Z	FAST SN	TMscore
Domains with score better than the threshold ( Comb score > 2.0 OR SVM score > 0.6 OR HH prob > 0.9 )
1	d1snza_	Galactose mutarotase	Galactose mutarotase-like	Supersandwich	All β	23.83	1.115	1.00	33.7	18.0	0.85
2	d1nsza_	Galactose mutarotase	Galactose mutarotase-like	Supersandwich	All β	23.35	1.123	1.00	32.5	17.9	0.84
3	d1lura_	Aldose 1-epimerase homologue	Galactose mutarotase-like	Supersandwich	All β	23.13	1.175	1.00	32.2	17.2	0.82
4	d1jova_	Hypothetical protein HI1317	Galactose mutarotase-like	Supersandwich	All β	19.38	1.771	1.00	24.4	15.1	0.68
5	d1k1xa2	4-alpha-glucanotransferase, C-terminal domain	Galactose mutarotase-like	Supersandwich	All β	12.25	1.886	0.95	18.2	10.5	0.59
6	d1jz7a4	beta-Galactosidase, domain 5	Galactose mutarotase-like	Supersandwich	All β	10.82	1.563	0.96	15.9	7.7	0.60
7	d1v7wa2	Chitobiose phosphorylase ChbP	Galactose mutarotase-like	Supersandwich	All β	9.71	1.557	0.22	15.1	7.8	0.54
8	d1nkga3	Rhamnogalacturonase B, RhgB, N-terminal domain	Galactose mutarotase-like	Supersandwich	All β	9.47	1.574	0.02	15.3	7.4	0.54
9	d1ug9a4	Glucodextranase, domain N	Galactose mutarotase-like	Supersandwich	All β	8.21	1.634	0.02	12.8	7.0	0.50
10	d1lf6a2	Bacterial glucoamylase, N-terminal domain	Galactose mutarotase-like	Supersandwich	All β	8.02	1.590	0.02	12.6	6.3	0.50
11	d1h54a2	Lactobacillus maltose phosphorylase, N-terminal domain	Galactose mutarotase-like	Supersandwich	All β	7.69	1.465	0.01	10.8	6.0	0.50
12	d1txka2	Glucans biosynthesis protein G (MdoG, OpgG), N-terminal domain	Galactose mutarotase-like	Supersandwich	All β	7.67	1.429	0.04	11.8	5.0	0.55
13	d1j0ma3	Xanthan lyase	Galactose mutarotase-like	Supersandwich	All β	7.17	1.523	0.01	11.8	6.0	0.53
14	d1o7d.2	Lysosomal alpha-mannosidase	Galactose mutarotase-like	Supersandwich	All β	6.97	1.906	0.14	12.4	5.3	0.51
15	d1hn0a4	Chondroitin ABC lyase I	Galactose mutarotase-like	Supersandwich	All β	6.93	1.566	0.02	10.9	5.7	0.52
16	d1rwha3	Chondroitinase AC	Galactose mutarotase-like	Supersandwich	All β	6.68	1.589	0.01	10.9	5.9	0.52
17	d1n7oa3	Hyaluronate lyase	Galactose mutarotase-like	Supersandwich	All β	6.65	1.590	0.03	11.0	5.1	0.52
18	d1cb8a3	Chondroitinase AC	Galactose mutarotase-like	Supersandwich	All β	6.64	1.476	0.01	11.3	5.8	0.50
19	d1siha1	Copper amine oxidase, domain 3	Amine oxidase catalytic domain	Supersandwich	All β	6.59	1.541	0.08	12.8	6.2	0.59
20	d1n9ea1	Lysyl oxidase PplO, domain 3	Amine oxidase catalytic domain	Supersandwich	All β	6.39	1.392	0.02	12.0	5.4	0.58
21	d1qwna2	Golgi alpha-mannosidase II	Galactose mutarotase-like	Supersandwich	All β	6.36	1.580	0.02	10.6	5.1	0.52
22	d1ekma1	Copper amine oxidase, domain 3	Amine oxidase catalytic domain	Supersandwich	All β	6.32	1.438	0.02	12.0	5.5	0.59
23	d1ksia1	Copper amine oxidase, domain 3	Amine oxidase catalytic domain	Supersandwich	All β	6.26	1.468	0.02	12.3	5.4	0.58
24	d1oaca1	Copper amine oxidase, domain 3	Amine oxidase catalytic domain	Supersandwich	All β	6.08	1.438	0.12	11.8	5.8	0.58
25	d1jmma_	V-region of surface antigen I/II (SA I/II, PAC)	V-region of surface antigen I/II (SA I/II, PAC)	Supersandwich	All β	2.492	-0.008	0.02	3.3	2.0	0.37
26	d1g87a2	Endo/exocellulase:cellobiose E-4, C-terminal domain	Carbohydrate-binding domain	Common fold of diphtheria toxin/transcription factors/cytochrome f	All β	2.41	0.726	0.04	3.0	2.8	0.26
27	d1kyfa1	Alpha-adaptin AP2 ear domain, N-terminal subdomain	Clathrin adaptor appendage domain	Immunoglobulin-like beta-sandwich	All β	2.40	0.882	0.06	3.9	3.0	0.18
28	d1nbca_	Cellusomal scaffolding protein A, scaffoldin	Carbohydrate-binding domain	Common fold of diphtheria toxin/transcription factors/cytochrome f	All β	2.200	0.418	0.06	2.4	2.9	0.20
29	d1gyva_	Gamma1-adaptin domain	Clathrin adaptor appendage domain	Immunoglobulin-like beta-sandwich	All β	2.193	0.591	0.06	3.3	3.2	0.19
30	d1e54a_	Porin	Porins	Transmembrane beta-barrels	mem	2.138	-1.280	0.07	2.0	1.3	0.34
31	d1uynx_	Translocator domain of NalP	Autotransporter	Transmembrane beta-barrels	mem	2.120	-0.735	0.04	2.4	1.7	0.26
32	d7ahla_	Alpha-hemolysin	Leukocidin-like	Leukocidin-like	mem	2.12	0.876	0.05	3.0	1.4	0.20
33	d1k45a_	Carbohydrate binding module from a thermostable xylanase	Galactose-binding domain-like	Galactose-binding domain-like	All β	2.098	-0.961	0.03	2.9	2.3	0.28
34	d1qd6.1	Outer membrane phospholipase A (OMPLA)	Outer membrane phospholipase A (OMPLA)	Transmembrane beta-barrels	mem	2.074	-1.021	0.08	2.0	1.6	0.34
35	d1guia_	Carbohydrate binding module from laminarinase 16A	Galactose-binding domain-like	Galactose-binding domain-like	All β	2.037	-1.693	0.06	1.8	2.3	0.27
36	d1qhda2	vp6, the major capsid protein of group A rotavirus	Viral protein domain	Viral protein domain	All β	2.030	-1.102	0.06	2.5	2.4	0.26
37	d1hn0a3	Chondroitin ABC lyase I	Hyaluronate lyase-like, C-terminal domain	Hyaluronate lyase-like, C-terminal domain	All β	2.015	-0.922	0.04	2.4	2.9	0.27
38	d3lkfa_	Leukocidin F (HlgB)	Leukocidin-like	Leukocidin-like	mem	1.95	0.894	0.02	2.7	1.2	0.33
39	d1e42a1	Beta2-adaptin AP2 ear domain, N-terminal subdomain	Clathrin adaptor appendage domain	Immunoglobulin-like beta-sandwich	All β	1.95	0.878	0.13	2.7	2.6	0.21
40	d1j0ma2	Xanthan lyase	Hyaluronate lyase-like, C-terminal domain	Hyaluronate lyase-like, C-terminal domain	All β	1.93	0.891	0.03	3.1	2.9	0.25
41	d1p4ua_	ADP-ribosylation factor binding protein Gga3 domain	Clathrin adaptor appendage domain	Immunoglobulin-like beta-sandwich	All β	1.72	0.866	0.05	2.6	1.5	0.21
42	d1t5ra_	Leucocidin S component LukS-PV	Leukocidin-like	Leukocidin-like	mem	1.52	0.878	0.07	2.3	1.0	0.24
43	d1nofa1	Glycosyl hydrolase family 5 xylanase	Glycosyl hydrolase domain	Glycosyl hydrolase domain	All β	1.50	1.203	0.03	1.9	2.4	0.22
44	d1r4xa1	Coatomer gamma subunit C-terminal domain, first subdomain	Clathrin adaptor appendage domain	Immunoglobulin-like beta-sandwich	All β	1.50	0.877	0.03	2.3	1.1	0.20
45	d1uasa1	Melibiase	Glycosyl hydrolase domain	Glycosyl hydrolase domain	All β	1.50	1.240	0.02	2.9	2.5	0.18
46	d1m1xa2	Thigh, calf-1 and calf-2 domains of integrin alpha	Integrin domains	Immunoglobulin-like beta-sandwich	All β	1.23	0.766	0.09	1.3	2.5	0.18
47	d1grwa_	Major sperm protein, MSP	PapD-like	Immunoglobulin-like beta-sandwich	All β	1.20	0.858	0.08	1.5	2.5	0.15
48	d1j0ha2	Neopullulanase	Glycosyl hydrolase domain	Glycosyl hydrolase domain	All β	1.12	1.080	0.05	1.5	3.0	0.19
49	d1ex0a3	Transglutaminase, two C-terminal domains	Transglutaminase, two C-terminal domains	Immunoglobulin-like beta-sandwich	All β	1.07	0.876	0.05	1.8	0.8	0.17
50	d1uoka1	Oligo-1,6-glucosidase	Glycosyl hydrolase domain	Glycosyl hydrolase domain	All β	1.03	1.258	0.02	1.8	2.5	0.13
51	d1vjja3	Transglutaminase, two C-terminal domains	Transglutaminase, two C-terminal domains	Immunoglobulin-like beta-sandwich	All β	0.93	0.876	0.05	1.9	0.8	0.13
52	d1p5va1	Chaperone protein Caf1m	PapD-like	Immunoglobulin-like beta-sandwich	All β	0.79	0.654	0.08	1.0	0.8	0.17
53	d1l4ia2	SfaE	Periplasmic chaperone C-domain	C2 domain-like	All β	0.54	0.673	0.02	0.9	1.7	0.10
SCOP domains with score worse than the threshold
54	d1g4ma2	Arrestin	E set domains	Immunoglobulin-like beta-sandwich	All β	1.97	0.425	0.04	2.2	2.3	0.23
55	d1lb6a_	TNF receptor associated factor 6 (TRAF6)	TRAF domain-like	TRAF domain-like	All β	1.95	-1.197	0.05	2.8	1.5	0.22
56	d1qwya_	Peptidoglycan hydrolase LytM	Duplicated hybrid motif	Barrel-sandwich hybrid	All β	1.95	-0.860	0.01	2.4	1.4	0.25
57	d1f0la1	Diphtheria toxin, C-terminal domain	Diphtheria toxin, C-terminal domain	Common fold of diphtheria toxin/transcription factors/cytochrome f	All β	1.93	-0.596	0.01	2.9	2.6	0.21
58	d1rwha2	Chondroitinase AC	Hyaluronate lyase-like, C-terminal domain	Hyaluronate lyase-like, C-terminal domain	All β	1.88	-1.102	0.02	3.0	2.5	0.24
59	d1gmea_	Small heat shock protein	HSP20-like chaperones	HSP20-like chaperones	All β	1.85	-1.053	0.01	2.2	1.4	0.23
60	d1q15a2	beta-Lactam synthetase	N-terminal nucleophile aminohydrolases (Ntn hydrolases)	Ntn hydrolase-like	α+β	1.79	-1.450	0.01	2.0	2.1	0.24
61	d1qhva_	Adenovirus fiber protein "knob" domain	Virus attachment protein globular domain	Virus attachment protein globular domain	All β	1.79	-1.143	0.04	1.6	1.7	0.27
62	d1t16a_	Long-chain fatty acid transport protein FadL	Porins	Transmembrane beta-barrels	mem	1.77	-1.123	0.03	1.4	1.1	0.33
63	d1ecfa2	Glutamine PRPP amidotransferase, N-terminal domain	N-terminal nucleophile aminohydrolases (Ntn hydrolases)	Ntn hydrolase-like	α+β	1.77	-1.194	0.01	2.0	1.8	0.28

Alignments and Scores

hit structures.

hit structures.

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1: d1snza_ Galactose mutarotase (hh: 1.000)

SCOP Superfamily: Galactose mutarotase-like | SCOP Fold: Supersandwich | SCOP Class: All beta proteins

Consensus: 0.85 Contact: 4002
Modified z-scores:
dali:1.00 daliz:1.00 gdtts:1.00 tmscore:1.00 rmsd:0.26 AHM:0.27 LBcontacta:1.00 LBcontactb:1.00 LHM:0.04
id:1.00 blosum:1.00 compass:0.98 pearson:1.00
Scaled scores:
dali:0.85 daliz:0.67 gdtts:0.74 tmscore:0.90 rmsd:0.91 AHM:0.85 LBcontacta:0.69 LBcontactb:0.76 LHM:0.76
id:0.17 blosum:0.24 compass:0.35 pearson:0.39

hit structure alignment

DALI alignment (Z-score: 33.7 Raw score:3602.20)

Query          1 --ANFIEKITYLG-------TPAIKAGNEHLEMIVVPeWGSNVISLVDK---TTNVQLLR     48
d1snza_        1 ghMASVTRAVFGElpsgggtVEKFQLQSDLLRVDIIS-WGCTITALEVKdrqGRASDVVL     59

Query         49 EPETAESFH-DTPTLygIPILF-PPNRISDGTFSFRGRTYHFDINEKdkHNHLHG---FL    103
d1snza_       60 GFAELEGYLqKQPYF--GAVIGrVANRIAKGTFKVDGKEYHLAINKE--PNSLHGgvrGF    115

Query        104 YHEKWNVvTTKQtdegVIVETEIDLSelPHVQkQFPHHAVVRMTYTIKENTLFKHATVMN    163
d1snza_      116 DKVLWTP-RVLS----NGVQFSRISP--DGEE-GYPGELKVWVTYTLDGGELIVNYRAQA    167

Query        164 KgkEAFPWGIGYHTTFIF------PAESSLFSLTADQQWELDERLLPTGKLMDV--PYKE    215
d1snza_      168 S--QATPVNLTNHSYFNLagqaspNINDHEVTIEADTYLPVDETLIPTGEVAPVqgTAFD    225

Query        216 aLHEGMDLR-------HKQLDDVFLSSYQkrggENQAVIYHQHAHISIIYKADeqFKHWV    268
d1snza_      226 -LRKPVELGkhlqdfhLNGFDHNFCLKGS-kekHFCARVHHAASGRVLEVYTT--QPGVQ    281

Query        269 VYNAD--------------gKQGYLCPEPYtWVTNAVNLDLpsslTGLQVLEPGEETTAK    314
d1snza_      282 FYTGNfldgtlkgkngavypKHSGFCLETQ-NWPDAVNQPR----FPPVLLRPGEEYDHT    336

Query        315 SSITIELN    322
d1snza_      337 TWFKFSVA    344

hit structure alignment

FAST alignment (Normalized score: 17.99 Raw score:5986.00)

Query          1 --ANFIEKITYL-------GTPAIKAGNEHLEMIVVPEWGSNVISLVDK----TTNVQLL     47
d1snza_        1 GHMASVTRAVFGELPSGGGTVEKFQLQSDLLRVDII-SWGCTITALEV-KDRQGRASDVV     58

Query         48 REPETAESFHDTPTLYGIP-------ILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLH    100
d1snza_       59 LGFAELEGYLQK-------QPYFGAVIGRVANRIAKGTFKVDGKEYHLAINK--EPNSL-    108

Query        101 G-----FLYHEKWNVVTTKQTDEG---VIVETEIDLSELPHVQK------QFPHHAVVRM    146
d1snza_      109 -HGGVRGFDKVLWTPR--------VLSNGVQFSRI---------SPDGEEGYPGELKVWV    150

Query        147 TYTIKENTLFKHATVMNKGKEAFPWGIGYHTTFIFP--------AESSLFSLTADQQWEL    198
d1snza_      151 TYTLDGGELIVNYRAQA--SQATPVNLTNHSYFN--LAGQASPNINDHEVTIEADTYLPV    206

Query        199 DERLLPTGKLMDVPYKE------ALHEGMDLRHK--------QLDDVFLSSYQKRGGE--    242
d1snza_      207 DETLIPTGEVAP-----VQGTAFDLRKPVELGK-HLQDFHLNGFDHNFCLK-------GS    253

Query        243 ----NQAVIYHQHAHISIIYKADEQFKHWVVYNADGK------------------QGYLC    280
d1snza_      254 KEKHFCARVHHAASGRVLEVYT--TQPGVQFYT----GNFLDGTLKGKNGAVYPKHSGFC    307

Query        281 PEPYTWVTNAVNLDLPSS-LTGLQVLEPGEETTAKSSITIELN--    322
d1snza_      308 LET-QNWPDAVNQ-----PRFPPVLLRPGEEYDHTTWFKFS--VA    344

hit structure alignment

TMalign alignment (TM-score: 0.85 Raw score:272.61)

Query          1 -A-NFIEKITYLG-------TPAIKAGNEHLEMIVVPEWGSNVISLVDK---TTNVQLLR     48
d1snza_        1 GHMASVTRAVFGELPSGGGTVEKFQLQSDLLRVDIISW-GCTITALEVKDRQGRASDVVL     59

Query         49 EPETAESFHDTPTLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHG---FLYH    105
d1snza_       60 GFAELEGYLQKQPYFGAVIGRVANRIAKGTFKVDGKEYHLAINKE--PNSLHGGVRGFDK    117

Query        106 EKWNVVTTKQTDEGVIVETEIDLSELPHVQKQFPHHAVVRMTYTIKENTLFKHATVMNKG    165
d1snza_      118 VLWTP-RVLS----NGVQFSRISP--D-GEEGYPGELKVWVTYTLDGGELIVNYRAQA-S    168

Query        166 KEAFPWGIGYHTTFIF------PAESSLFSLTADQQWELDERLLPTGKLMDV--PYKEAL    217
d1snza_      169 -QATPVNLTNHSYFNLAGQASPNINDHEVTIEADTYLPVDETLIPTGEVAPVQGTAFD-L    226

Query        218 HEGMDLR---H---K-QLDDVFLSSYQ-KRGGENQAVIYHQHAHISIIYKADEQFKHWVV    269
d1snza_      227 RKPVELGKHLQDFHLNGFDHNFCLKGSK--EKHFCARVHHAASGRVLEVYTT--QPGVQF    282

Query        270 YNADG--------------KQGYLCPEPYTWVTNAVNLDLPSSLTGLQVLEPGEETTAKS    315
d1snza_      283 YTGNFLDGTLKGKNGAVYPKHSGFCLETQN-WPDAVNQPR----FPPVLLRPGEEYDHTT    337

Query        316 SITIELN    322
d1snza_      338 WFKFSVA    344

hit structure alignment

HHsearch alignment (Probability: 1.00 E-value:0.00)

DALI match         **************** .***********...   **************..... ...
Query         10 LGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTN---VQLLREPETAESFHDTPTLYGIP     66
d1snza_       19 GTVEKFQLQSDLLRVDII-SWGCTITALEVKDRQGRASDVVLGFAELEGYLQKQPYFGAV     77

DALI match       ...************************.  *****......... ....  . ...... 
Query         67 ILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDEGVIVETEI    126
d1snza_       78 IGRVANRIAKGTFKVDGKEYHLAINKEP--NSLHGGVRGFDKVLWTPRVLSNGVQFSRI-    134

DALI match           ..... **************************  . ***************     
Query        127 DLSELPHVQKQFPHHAVVRMTYTIKENTLFKHATVMNKGKEAFPWGIGYHTTFIFPA---    183
d1snza_      135 ----SPDGEEGYPGELKVWVTYTLDGGELIVNYRAQ--ASQATPVNLTNHSYFNLAGQAS    188

DALI match          ****************************.. .. ********          *****
Query        184 ---ESSLFSLTADQQWELDERLLPTGKLMDVPY-KEALHEGMDLRHKQ-------LDDVF    232
d1snza_      189 PNINDHEVTIEADTYLPVDETLIPTGEVAPVQGTAFDLRKPVELGKHLQDFHLNGFDHNF    248

DALI match       *****    ********************. .  *******               ****
Query        233 LSSYQKRGGENQAVIYHQHAHISIIYKADEQFKHWVVYNAD--------------GKQGY    278
d1snza_      249 CLKGS-KEKHFCARVHHAASGRVLEVYTTQPG--VQFYTGNFLDGTLKGKNGAVYPKHSG    305

DALI match       ****** **********.      *******************
Query        279 LCPEPYTWVTNAVNLDLPSSLTGLQVLEPGEETTAKSSITIEL    321
d1snza_      306 FCLETQ-NWPDAVNQPRFPP----VLLRPGEEYDHTTWFKFSV    343

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2: d1nsza_ Galactose mutarotase (hh: 1.000)

SCOP Superfamily: Galactose mutarotase-like | SCOP Fold: Supersandwich | SCOP Class: All beta proteins

Consensus: 0.87 Contact: 3869
Modified z-scores:
dali:1.00 daliz:1.00 gdtts:1.00 tmscore:1.00 rmsd:0.26 AHM:0.27 LBcontacta:1.00 LBcontactb:1.00 LHM:0.03
id:1.00 blosum:0.99 compass:0.98 pearson:1.00
Scaled scores:
dali:0.84 daliz:0.65 gdtts:0.72 tmscore:0.90 rmsd:0.90 AHM:0.85 LBcontacta:0.68 LBcontactb:0.77 LHM:0.79
id:0.12 blosum:0.20 compass:0.35 pearson:0.39

hit structure alignment

DALI alignment (Z-score: 32.5 Raw score:3470.20)

Query          1 anFIEKITYL-GTPAIKAGNEH-LEMIVVPeWGSNVISLVDktTNVQLLREPETAESFH-     57
d1nsza_        1 --SIKIRDFGlGSDLISLTNKAgVTISFTN-LGARIVDWQK--DGKHLILGFDSAKEYLe     55

Query         58 DTPTLygIPILF-PPNRISDGTFSFRGRTYHFDINEKdkHNHLHG---FLYHEKWNVvTT    113
d1nsza_       56 KDAYP--GATVGpTAGRIKDGLVKISGKDYILNQNEG--PQTLHGgeeSIHTKLWTY-EV    110

Query        114 KQTDEGVIVETEIDLSelPHVQkQFPHHAVVRMTYTIK-ENTLFKHATVMNKgkEAFPWG    172
d1nsza_      111 TDLGAEVQVKFSLVSN--DGTN-GYPGKIEMSVTHSFDdDNKWKIHYEAISD--KDTVFN    165

Query        173 IGYHTTFIF------PAESSLFSLTADQQWELDE-RLLPTGKLMDV--PYKEaLHEGMDL    223
d1nsza_      166 PTGNVYFNLngdaseSVENHGLRLAASRFVPLKDqTEIVRGDIVDIknTDLD-FRQEKQL    224

Query        224 RHK------------QLDDVFLSSYQkrgGENQAVIYHQhaHISIIYKADeqFKHWVVYN    271
d1nsza_      225 SNAfnsnmeqvqlvkGIDHPFLLDQL-glDKEQARLTLD--DTSISVFTD--QPSIVIFT    279

Query        272 ADG-------------KQGYLCPEPYtWVTNAvNLDLpssLTGLQVLEPGEETTAKSSIT    318
d1nsza_      280 ANFgdlgtlyhekkqvHHGGITFECQ-VSPGS-EQIP---ELGDISLKAGEKYQATTIYS    334

Query        319 IELN--    322
d1nsza_      335 LHTKle    340

hit structure alignment

FAST alignment (Normalized score: 17.90 Raw score:5924.00)

Query          1 ANFIEKITY-LGTPAIKAGNE-HLEMIVVPEWGSNVISLVDKT-TNVQLLREPETAESFH     57
d1nsza_        1 --SIKIRDFGLGSDLISLTNKAGVTISFT-NLGARIVDWQ---KDGKHLILGFDSAKEYL     54

Query         58 -DTPTLYGIPI-LFPPNRISDGTFSFRGRTYHFDINEKD-KHNHLHG----FLYHEKWNV    110
d1nsza_       55 EKDAY--PGATVGPTAGRIKDGLVKISGKDYILNQN---EGPQTLH-GGEESIHTKLWT-    107

Query        111 VTTKQTDEGVIVETEIDLSELPHVQK------QFPHHAVVRMTYTIK-ENTLFKHATVMN    163
d1nsza_      108 YEVTDLGAEVQVKFSLV---------SNDGTNGYPGKIEMSVTHSFDDDNKWKIHYEAIS    158

Query        164 KGKEAFPWGIGYHTTFIFP--------AESSLFSLTADQQWEL-DERLLPTGKLMDVPYK    214
d1nsza_      159 --DKDTVFNPTGNVYFN--LNGDASESVENHGLRLAASRFVPLKDQTEIVRGDIVD----    210

Query        215 EA-------LHEGMDLRHK-------------QLDDVFLSSYQKRGGEN-------QAVI    247
d1nsza_      211 --IKNTDLDFRQEKQLSN-AFNSNMEQVQLVKGIDHPFLLD--------QLGLDKEQARL    259

Query        248 YHQHAHISIIYKADEQFKHWVVYNADGK-----------------QGYLCPEPYTWVTNA    290
d1nsza_      260 TL--DDTSISVFT--DQPSIVIFT----ANFGDLGTLYHEKKQVHHGGITFEC-QVSPGS    310

Query        291 VNLDLPSS-LTGLQVLEPGEETTAKSSITIELN----    322
d1nsza_      311 EQI-----PELGDISLKAGEKYQATTIYSLH--TKLE    340

hit structure alignment

TMalign alignment (TM-score: 0.84 Raw score:270.74)

Query          1 ANFIEKITYLG-TPAIKAGNEH-LEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFH-     57
d1nsza_        1 --SIKIRDFGLGSDLISLTNKAGVTISFTN-LGARIVDWQK--DGKHLILGFDSAKEYLE     55

Query         58 DTPTLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHG---FLYHEKWNVVTTK    114
d1nsza_       56 KDAY-PGATVGPTAGRIKDGLVKISGKDYILNQNEG--PQTLHGGEESIHTKLWTY-EVT    111

Query        115 QTDEGVIVETEIDLSELPHVQKQFPHHAVVRMTYTIK-ENTLFKHATVMNKGKEAFPWGI    173
d1nsza_      112 DLGAEVQVKFSLVSN--D-GTNGYPGKIEMSVTHSFDDDNKWKIHYEAIS-D-KDTVFNP    166

Query        174 GYHTTFIF------PAESSLFSLTADQQWELDE-RLLPTGKLMDV--PYKEALHEGMDLR    224
d1nsza_      167 TGNVYFNLNGDASESVENHGLRLAASRFVPLKDQTEIVRGDIVDIKNTDLD-FRQEKQLS    225

Query        225 --HK----------QLDDVFLSSYQKRGGENQAVIYHQHAHISIIYKADEQFKHWVVYNA    272
d1nsza_      226 NAFNSNMEQVQLVKGIDHPFLLDQL-GLDKEQARLTLD--DTSISVFTD--QPSIVIFTA    280

Query        273 D-------------GKQGYLCPEPYTWVTNAVNLDLPSSLTGLQVLEPGEETTAKSSITI    319
d1nsza_      281 NFGDLGTLYHEKKQVHHGGITFECQ-VSPGS-EQIP---ELGDISLKAGEKYQATTIYSL    335

Query        320 ELN--    322
d1nsza_      336 HTKLE    340

hit structure alignment

HHsearch alignment (Probability: 1.00 E-value:0.00)

DALI match       .*********** ****** .**********  ****************..... .....
Query         10 LGTPAIKAGNEH-LEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTPTLYGIPIL     68
d1nsza_        9 LGSDLISLTNKAGVTISFT-NLGARIVDWQK--DGKHLILGFDSAKEYLEKDAYPGATVG     65

DALI match       .************************. ............... **************** 
Query         69 FPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDEGVIVETEIDL    128
d1nsza_       66 PTAGRIKDGLVKISGKDYILNQNEGPQTLHGGEESIHTKLWTYEVTDLGAEVQVKFSLV-    124

DALI match         ..... ***************... .........  ***************       
Query        129 SELPHVQKQFPHHAVVRMTYTIKENTLFKHATVMNKGKEAFPWGIGYHTTFIFPA-----    183
d1nsza_      125 --SNDGTNGYPGKIEMSVTHSFDDDN-KWKIHYEAISDKDTVFNPTGNVYFNLNGDASES    181

DALI match        *************** ..***********.. .. **********             *
Query        184 -ESSLFSLTADQQWEL-DERLLPTGKLMDVPY-KEALHEGMDLRHKQ------------L    228
d1nsza_      182 VENHGLRLAASRFVPLKDQTEIVRGDIVDIKNTDLDFRQEKQLSNAFNSNMEQVQLVKGI    241

DALI match       *******   . ..........  *********. .  *****                *
Query        229 DDVFLSSYQKRGGENQAVIYHQHAHISIIYKADEQFKHWVVYN-------------ADGK    275
d1nsza_      242 DHPFLLD---QLGLDKEQARLTLDDTSISVFTDQPS--IVIFTANFGDLGTLYHEKKQVH    296

DALI match       ********* *****.....       *******************
Query        276 QGYLCPEPYTWVTNAVNLDLPSSLTGLQVLEPGEETTAKSSITIEL    321
d1nsza_      297 HGGITFECQ-VSPGSEQIPELGD----ISLKAGEKYQATTIYSLHT    337

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3: d1lura_ Aldose 1-epimerase homologue (hh: 1.000)

SCOP Superfamily: Galactose mutarotase-like | SCOP Fold: Supersandwich | SCOP Class: All beta proteins

Consensus: 0.81 Contact: 3924
Modified z-scores:
dali:1.00 daliz:1.00 gdtts:1.00 tmscore:1.00 rmsd:0.26 AHM:0.29 LBcontacta:1.00 LBcontactb:1.00 LHM:0.04
id:1.00 blosum:1.00 compass:0.98 pearson:1.00
Scaled scores:
dali:0.84 daliz:0.66 gdtts:0.74 tmscore:0.90 rmsd:0.90 AHM:0.84 LBcontacta:0.67 LBcontactb:0.77 LHM:0.75
id:0.16 blosum:0.25 compass:0.35 pearson:0.39

hit structure alignment

DALI alignment (Z-score: 32.2 Raw score:3409.50)

Query          1 anfiekitylGTPAIKAGN-EHLEMIVVPeWGSNVISLVDK---TTNVQLLREPETAESF     56
d1lura_        1 ----------ASGFIEIANkQGLTATLLP-FGATLAKLTFPdknGKNQDLVLGFDTIDEF     49

Query         57 -HDTPTLygIPILF-PPNRISDGTFSFRGRTYHFDINEkdKHNHLHG---FLYHEKWNVV    111
d1lura_       50 eKDAASI--GKTVGrVANRIKNSTLHFDGKQYTMTPNN--GPHYLHGgpnGLGYRKWEVV    105

Query        112 TTKQtdegVIVETEIDLSeLPHVqkQFPHHAVVRMTYTIKE-NTLFKHATVMNKGkeAFP    170
d1lura_      106 RHAP----ESVSFSVRAN-EQDD--GLPGDAKIDVTYTVNDrNQLIIEHHATCDT--PGL    156

Query        171 WGIGYHTTFI----fPAESSLFSLTADQQWELDERLLPTGKLMDV--PYKEaLHEGMDLR    224
d1lura_      157 LALTNHAYWNldgsdTVAEHFLEMEADEFVEVDDTFCPTGAIRSVtdTGFD-FRSGKQLK    215

Query        225 --------HKQLDDVFLSSYQKrggENQAVIYHQHAHISIIYKADeqFKHWVVYNAD---    273
d1lura_      216 esgkdaeeLLDLDNDLVITKKT--pSTYLRFWSEKSGIELSITTS--YPVIHLYASKfld    271

Query        274 ---------gKQGYLCPEPYtWVTNAVNLDLpsslTGLQVLEPGEETTAKSSITIELN-    322
d1lura_      272 ckgkkgehykANKALAIEPQ-FHSAAPNFDH----FPDVSLRPGDHYCQEIVYTFSHVn    325

hit structure alignment

FAST alignment (Normalized score: 17.25 Raw score:5582.00)

Query          1 ANFIEKITYLG-TPAIKAGNE-HLEMIVVPEWGSNVISLVDK----TTNVQLLREPETAE     54
d1lura_        1 -----------ASGFIEIANKQGLTATLLP-FGATLAKLTF-PDKNGKNQDLVLGFDTID     47

Query         55 SFHDTPTLYGIP---------ILFPPNRISDGTFSFRGRTYHFDINEKD-KHNHLHG---    101
d1lura_       48 EFE---------KDAASIGKTVGRVANRIKNSTLHFDGKQYTMTPN---NGPHYLH-GGP     94

Query        102 -FLYHEKWNVVTTKQTDEG--VIVETEIDLSELPHVQK------QFPHHAVVRMTYTIK-    151
d1lura_       95 NGLGYRKWEVVRH------APESVSFSVR---------ANEQDDGLPGDAKIDVTYTVND    139

Query        152 ENTLFKHATVMNKGKEAFPWGIGYHTTFIFP------AESSLFSLTADQQWELDERLLPT    205
d1lura_      140 RNQLIIEHHATC--DTPGLLALTNHAYWN--LDGSDTVAEHFLEMEADEFVEVDDTFCPT    195

Query        206 GKLMDVPYKEA------LHEGMDLR--------HKQLDDVFLSSYQKRGGEN-------Q    244
d1lura_      196 GAIRSV-----TDTGFDFRSGKQLKESGKDAEELLDLDNDLVI---------TKKTPSTY    241

Query        245 AVIYHQHAHISIIYKADEQFKHWVVYNADGK----------------QGYLCPEPYTWVT    288
d1lura_      242 LRFWSEKSGIELSITT--SYPVIHLYA----SKFLDCKGKKGEHYKANKALAIEP-QFHS    294

Query        289 NAVNLDLPSS-LTGLQVLEPGEETTAKSSITIELN---    322
d1lura_      295 AAPNF-----DHFPDVSLRPGDHYCQEIVYTFS--HVN    325

hit structure alignment

TMalign alignment (TM-score: 0.82 Raw score:264.06)

Query          1 ANFIEKITYLGTPAIKAGNEH-LEMIVVPEWGSNVISLVDK---TTNVQLLREPETAESF     56
d1lura_        1 ----------ASGFIEIANKQGLTATLLP-FGATLAKLTFPDKNGKNQDLVLGFDTIDEF     49

Query         57 HDTPTLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHG---FLYHEKWNVVTT    113
d1lura_       50 EKDAASIGKTVGRVANRIKNSTLHFDGKQYTMTPNN--GPHYLHGGPNGLGYRKWEVVRH    107

Query        114 KQTDEGVIVETEIDLSELPHVQKQFPHHAVVRMTYTIKE-NTLFKHATVMNKGKEAFPWG    172
d1lura_      108 AP----ESVSFSVRAN-EQDD--GLPGDAKIDVTYTVNDRNQLIIEHHATC-D-TPGLLA    158

Query        173 IGYHTTFIF--P--AESSLFSLTADQQWELDERLLPTGKLMDV-PYKEALHEGMDLR---    224
d1lura_      159 LTNHAYWNLDGSDTVAEHFLEMEADEFVEVDDTFCPTGAIRSVTDTGFDFRSGKQLKESG    218

Query        225 ----H-KQLDDVFLSSYQKRGGENQAVIYHQHAHISIIYKADEQFKHWVVYNAD------    273
d1lura_      219 KDAEELLDLDNDLVITK--KTPSTYLRFWSEKSGIELSITTS--YPVIHLYASKFLDCKG    274

Query        274 ------GKQGYLCPEPYTWVTNAVNLDLPSSLTGLQVLEPGEETTAKSSITIELN-    322
d1lura_      275 KKGEHYKANKALAIEPQF-HSAAPNFDH----FPDVSLRPGDHYCQEIVYTFSHVN    325

hit structure alignment

HHsearch alignment (Probability: 1.00 E-value:0.00)

DALI match       ********.. ****** .**********   .****************...... ....
Query         12 TPAIKAGNEH-LEMIVVPEWGSNVISLVD---KTTNVQLLREPETAESFHDTPTLYGIPI     67
d1lura_        2 SGFIEIANKQGLTATLL-PFGATLAKLTFPDKNGKNQDLVLGFDTIDEFEKDAASIGKTV     60

DALI match       ..***********************. ............. ********.   ....   
Query         68 LFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEK-WNVVTTKQTDEGVIVETEI    126
d1lura_       61 GRVANRIKNSTLHFDGKQYTMTPNNGPHYLHGGPNGLGYRKWEVVRHAPESVSFSVR---    117

DALI match           ....  ****************.. ..........  ************* ..   
Query        127 DLSELPHVQKQFPHHAVVRMTYTIKENTLFKHATVMNKGKEAFPWGIGYHTTFIFPA---    183
d1lura_      118 ----ANEQDDGLPGDAKIDVTYTVNDRN-QLIIEHHATCDTPGLLALTNHAYWNLDGSDT    172

DALI match        ****************************.. .. ********           ******
Query        184 -ESSLFSLTADQQWELDERLLPTGKLMDVPY-KEALHEGMDLRHKQ--------LDDVFL    233
d1lura_      173 VAEHFLEMEADEFVEVDDTFCPTGAIRSVTDTGFDFRSGKQLKESGKDAEELLDLDNDLV    232

DALI match       *****   ********************. .  *******             *******
Query        234 SSYQKRGGENQAVIYHQHAHISIIYKADEQFKHWVVYNAD------------GKQGYLCP    281
d1lura_      233 ITKKTP--STYLRFWSEKSGIELSITTSYPV--IHLYASKFLDCKGKKGEHYKANKALAI    288

DALI match       *** **********.      *******************
Query        282 EPYTWVTNAVNLDLPSSLTGLQVLEPGEETTAKSSITIEL    321
d1lura_      289 EPQ-FHSAAPNFDHFPD----VSLRPGDHYCQEIVYTFSH    323

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4: d1jova_ Hypothetical protein HI1317 (hh: 1.000)

SCOP Superfamily: Galactose mutarotase-like | SCOP Fold: Supersandwich | SCOP Class: All beta proteins

Consensus: 0.75 Contact: 3183
Modified z-scores:
dali:1.00 daliz:1.00 gdtts:1.00 tmscore:1.00 rmsd:0.32 AHM:0.36 LBcontacta:1.00 LBcontactb:1.00 LHM:0.06
id:1.00 blosum:0.80 compass:0.91 pearson:1.00
Scaled scores:
dali:0.82 daliz:0.61 gdtts:0.66 tmscore:0.84 rmsd:0.87 AHM:0.79 LBcontacta:0.67 LBcontactb:0.77 LHM:0.70
id:0.08 blosum:0.15 compass:0.34 pearson:0.32

hit structure alignment

DALI alignment (Z-score: 24.4 Raw score:2507.90)

Query          1 ---------anFIEKITYLGTPAIKAGNEHLEMIVVPeWGSNVISLVDKTTNVQLLREP-     50
d1jova_        1 mkttllktltpELHLVQHNDIPVLHLKHAVGTAKISL-QGAQLISWKPQNAKQDVLWLSe     59

Query         51 -ETAEsfHDTPtLYGIPILF-PPNRISdgtfsfrgrtyhfdinekdkhNHLHGFLYHEKW    108
d1jova_       60 vEPFK-nGNAI-RGGVPICYpWFGGVK---------------------QPAHGTARIRLW     96

Query        109 NVVTTKQTDEGVIVETEIDLSELphvqkqfphHAVVRMTYTIKeNTLFKHATVMNkgkeA    168
d1jova_       97 QLSHYYISVHKVRLEFELFSDLN---------IIEAKVSMVFT-DKCHLTFTHYG----E    142

Query        169 FPWGIGYHTTFIF-PAESSLFSLTADQQWELderllpTGKLMDvpyKEALhegMDLRhKQ    227
d1jova_      143 ESAQAALHTYFNIgDINQVEVQGLPETCFNS-----lNQQQEN---VPSP---RHIS-EN    190

Query        228 LDDVFLSSyqkrggENQAVIYHQHAHISIIYKADeQFKHWVVYNAD----------gKQG    277
d1jova_      191 VDCIYSAE------NMQNQILDKSFNRTIALHHH-NASQFVLWNPWhkktsgmsetgYQK    243

Query        278 YLCPEPYTWvtnavnldlpsslTGLQVLepgeETTAKSSITIEln    322
d1jova_      244 MLCLETARI-------------HHLLEF----GESLSVEISLK--    269

hit structure alignment

FAST alignment (Normalized score: 15.13 Raw score:4452.00)

Query          1 AN-----------FIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLRE     49
d1jova_        1 --MKTTLLKTLTPELHLVQHNDIPVLHLKHAVGTAKISL-QGAQLISWKPQNAKQDVLWL     57

Query         50 PETAESFHDTP--------TLYGIPI-LFPPNRISDGTFSFRGRTYHFDINEKDKH---N     97
d1jova_       58 SEV--------EPFKNGNAIRGGVPICYPWFG------------------------GVKQ     85

Query         98 HLHGFLYHEKWNVVTTKQTDEGVIVETEIDLSELPHVQKQFPHHA------VVRMTYTIK    151
d1jova_       86 PAHGTARIRLWQLSHYYISVHKVRLEFELF---------------SDLNIIEAKVSMVF-    129

Query        152 ENTLFKHATVMNKGKE--AFPWGIGYHTTFIF-PAESSLFSL--TADQQWELDERLL-PT    205
d1jova_      130 TDKCHLTFTH------YGEESAQAALHTYFNIGDINQVEV--QGLPETCFN------SLN    175

Query        206 GKLMDVPYKEALH-EGMDLRHKQLDDVFLSSYQKRGG-ENQAVIYHQHAHISIIYKADEQ    263
d1jova_      176 QQQENV-------PSPRHIS-ENVDCIYSA-------ENMQNQILDKSFNRTIALHH-HN    219

Query        264 FKHWVVYNADGK--------------QGYLCPEPYTWVTNAVNLDLPSSL-TGLQVLEPG    308
d1jova_      220 ASQFVLWN----PWHKKTSGMSETGYQKMLCLETAR--------------IHHLL-----    256

Query        309 -EETTAKSSITIELN--    322
d1jova_      257 EFGESLSVEIS----LK    269

hit structure alignment

TMalign alignment (TM-score: 0.68 Raw score:218.33)

Query          1 ---------ANFIEKITYLG-TPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREP     50
d1jova_        1 MKTTLLKTL-TPELHLVQHNDIPVLHLKHAVGTAKISL-QGAQLISWKPQNAKQDVLWLS     58

Query         51 ETAESFHDTPTLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNV    110
d1jova_       59 EVEPFKNGNAIRGGVPICYPWFGGV-K------------QP-------AHGTARIRLWQL     98

Query        111 VTTKQTDEGVIVETEIDLSELPHVQKQFPHHAVVRMTYTIKENTLFKHATVMNKGKEAFP    170
d1jova_       99 SHYYISVHKVRLEFELFSDLN---------IIEAKVSMVFT-DKCHLTFTHYG----EES    144

Query        171 WGIGYHTTFIF-PAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLD    229
d1jova_      145 AQAALHTYFNIGDINQVEVQGLPETCFNSLN-Q--Q---QENVP-SPR----HI-SENVD    192

Query        230 DVFLSSYQKRGGENQAVIYHQHAHISIIYKADEQFKHWVVYNADG--------K-QG-YL    279
d1jova_      193 CIYSAEN------MQNQILDKSFNRTIALHHH-NASQFVLWNPWHKKTSGMSETGYQKML    245

Query        280 CPEPYTWVTNAVNLDLPSSLTGLQVLEPGEETTAKSSITIELN    322
d1jova_      246 CLETARI-------------HHLLEF----GESLSVEISLK--    269

hit structure alignment

HHsearch alignment (Probability: 1.00 E-value:0.00)

DALI match         ************************* .*********************....  ....
Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d1jova_       10 TPELHLVQHNDIPVLHLKHAVGTAKIS-LQGAQLISWKPQNAKQDVLWLSEVEPFKNGNA     68

DALI match        ********.                          ************************
Query         61 TLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDEGV    120
d1jova_       69 IRGGVPICYP--------------------WFGGVKQPAHGTARIRLWQLSHYYISVHKV    108

DALI match       *******             **********     ........    *************
Query        121 IVETEIDLSELPHVQKQFPHHAVVRMTYTIKENTLFKHATVMNKGKEAFPWGIGYHTTFI    180
d1jova_      109 RLEFELF---------SDLNIIEAKVSMVF-----TDKCHLTFTHYGEESAQAALHTYFN    154

DALI match       *........                        ....   .... *******        
Query        181 FPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVFLSSYQKRG    240
d1jova_      155 IGDINQVEV-----------QGLPETCFNSLNQQQENVPSPRHISENVDCIY------SA    197

DALI match        ******************* .***********             **********    
Query        241 GENQAVIYHQHAHISIIYKADEQFKHWVVYNADGKQ----------GYLCPEPYTWVTNA    290
d1jova_      198 ENMQNQILDKSFNRTIALHH-HNASQFVLWNPWHKKTSGMSETGYQKMLCLETARIH---    253

DALI match                   ...  . ........
Query        291 VNLDLPSSLTGLQVLEPGEETTAKSSI    317
d1jova_      254 ------------HLLEFGESLSVEISL    268

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5: d1k1xa2 4-alpha-glucanotransferase, C-terminal domain (hh: 0.945)

SCOP Superfamily: Galactose mutarotase-like | SCOP Fold: Supersandwich | SCOP Class: All beta proteins

Consensus: 0.73 Contact: 2649
Modified z-scores:
dali:1.00 daliz:1.00 gdtts:1.00 tmscore:1.00 rmsd:0.32 AHM:0.40 LBcontacta:1.00 LBcontactb:1.00 LHM:0.07
id:1.00 blosum:0.23 compass:0.35 pearson:1.00
Scaled scores:
dali:0.81 daliz:0.59 gdtts:0.66 tmscore:0.82 rmsd:0.86 AHM:0.76 LBcontacta:0.67 LBcontactb:0.75 LHM:0.63
id:0.06 blosum:0.11 compass:0.21 pearson:0.20

hit structure alignment

DALI alignment (Z-score: 18.2 Raw score:1885.00)

Query          1 ANFIEKITYLG--TPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPE-------     51
d1k1xa2        1 KPENKILDVDFdgRAEIMVENDGFIATIKPHYGGSIFELSSKRKAVNYNDVLPrrwehyh     60

Query         52 -------taesfHDTPtLYGI-PILFPpnrisdgtfsfrgrtyhfdinekdkhNHLH-GF    102
d1k1xa2       61 eqipeeirrelaYDWQ-LRAIlQDHFI--------------kpeetldnyrlvKYHElGD    105

Query        103 LYHEKWNVvTTKQtdegVIVETEIDLSelphvQKQFPHHAVVRMTYTIKENTLFKHATVM    162
d1k1xa2      106 FVNQPYEY-EMIE----NGVKLWREGG----vYAEEKIPARVEKKIELTEDGFIAKYRVL    156

Query        163 NKGkeAFPWGIGYHTTFIFPaeSSLFsltadqqwelderllptgklmdvpykealhegmd    222
d1k1xa2      157 LEK--PYKALFGVEINLAVH--SVME----------------------------------    178

Query        223 lrhkqLDDVFLSsyqkrggeNQAVIYHQHAhISIIYKADEqFKHWVVYNADG--------    274
d1k1xa2      179 -----KPEEFEA--------KEFEVNDPYGiGKVRIELDK-AAKVWKFPIKTlsqseagw    224

Query        275 --KQGYLCPEPYTwvtnavnldlpssltgLQVLepgeETTAKSSITIEln    322
d1k1xa2      225 dfIQQGVSYTMLF----------------PIEK----ELEFTVRFREL--    252

hit structure alignment

FAST alignment (Normalized score: 10.52 Raw score:2997.00)

Query          1 ANFIEKITY--LGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHD     58
d1k1xa2        1 KPENKILDVDFDGRAEIMVENDGFIATIKPHYGGSIFELSSKRKAVNY------------     48

Query         59 TP----------------------------TLYGIPILFPPNRISDGTFSFRGRTYHFDI     90
d1k1xa2       49 --NDVLPRRWEHYHEQIPEEIRRELAYDWQLRAILQDH----------------------     84

Query         91 NEKDKHNHLH-------------------GFLYHEKWNVVTTKQTDEG-----VIVETEI    126
d1k1xa2       85 ----------FIKPEETLDNYRLVKYHELGDFVNQPYE----------YEMIENGVKLWR    124

Query        127 DLSELPHVQKQF-------PHHAVVRMTYTIKENTLFKHATVMNKGKEAFPWGIGYHTTF    179
d1k1xa2      125 E-----------GGVYAEEKIPARVEKKIELTEDGFIAKYRVLL--EKPYKALFGVEINL    171

Query        180 IFPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQ-----LDDVFLS    234
d1k1xa2      172 AV----------------------------------------------HSVMEKPEEF--    183

Query        235 SYQKRGGE--NQAVIYHQHAH---ISIIYKADEQF--KHWVVYNADG-------------    274
d1k1xa2      184 --------EAKEFEVNDP---YGIGKVRIELD---KAAKVWKFP---IKTLSQSEAGWDF    226

Query        275 KQGYLCPEPYTWVTNAVNLDLPSSLTGLQVLEPG----EETTAKSSITIELN-    322
d1k1xa2      227 IQQGVSYTML------------------------FPIEKELEFTVRFRE---L    252

hit structure alignment

TMalign alignment (TM-score: 0.59 Raw score:188.38)

Query          1 ANFIEKITYLGT--PAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPE--TAES-     55
d1k1xa2        1 KPENKILDVDFDGRAEIMVENDGFIATIKPHYGGSIFELSSKRKAVNYNDVLPRR--WEH     58

Query         56 --------------FHDTPTLYGIPILFPPNRISD--GTFSFRGRTYHFDINE-KDKHNH     98
d1k1xa2       59 YHEQIPEEIRRELA--YDWQLRAILQDHFIKPEETLD--------------NYR-LVKYH    101

Query         99 LHGFLYHEKWNVVTTKQTDEGVIVETEIDLSELPHVQKQFPHHAVVRMTYTIKENTLFKH    158
d1k1xa2      102 ELGDFVNQPYEY-EMIE----NGVKLWREGG----VYAEEKIPARVEKKIELTEDGFIAK    152

Query        159 ATVMNKGKEAFPWGIGYHTTFIFPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALH    218
d1k1xa2      153 YRVLL-E-KPYKALFGVEINLAVHS-----------------------------------    175

Query        219 EGMDLRHKQLDDVFLSSYQKRGGENQAVIYHQHAHISIIYKADEQFKHWVVYNAD-----    273
d1k1xa2      176 ----VM-E-KPEEFEA--------KEFEVNDPYGIGKVRIELDK-AAKVWKFPIKTLSQS    220

Query        274 -----GKQGYLCPEPYTWVTNAVNLDLPSSLTGLQVLEPGEETTAKSSITIELN    322
d1k1xa2      221 EAGWDFIQQGVSYTMLF----------------PIEK----ELEFTVRFREL--    252

hit structure alignment

HHsearch alignment (Probability: 0.90 E-value:0.00)

DALI match       ...........************************************   .         
Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d1k1xa2        3 ENKILDVDFDGRAEIMVENDGFIATIKPHYGGSIFELSSKRKAVNYN---DVLPRRWE--     57

DALI match                                                      ....   ******
Query         61 TLYGIPILFPPNRISDGT-----------FSFRGRTYHFDINEKDKHNHLH---GFLYHE    106
d1k1xa2       58 --------HYHEQIPEEIRRELAYDWQLRAILQDHFIKPEETLDNYRLVKYHELGDFVNQ    109

DALI match       ****.....        ......   . .....  ************************.
Query        107 KWNVVTTKQTDEGVIVETEIDLSELPHVQKQFPHHAVVRMTYTIKENTLFKHATVMNKGK    166
d1k1xa2      110 PYEYEMIENG-------VKLWREGGVYAEEKIP--ARVEKKIELTEDGFIAKYRVLLEKP    160

DALI match        ......
Query        167 EAFPWGI    173
d1k1xa2      161 YKALFGV    167

hit structures.

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6: d1jz7a4 beta-Galactosidase, domain 5 (hh: 0.964)

SCOP Superfamily: Galactose mutarotase-like | SCOP Fold: Supersandwich | SCOP Class: All beta proteins

Consensus: 0.63 Contact: 2458
Modified z-scores:
dali:1.00 daliz:1.00 gdtts:1.00 tmscore:1.00 rmsd:0.35 AHM:0.42 LBcontacta:1.00 LBcontactb:1.00 LHM:0.07
id:1.00 blosum:0.01 compass:0.12 pearson:1.00
Scaled scores:
dali:0.79 daliz:0.54 gdtts:0.57 tmscore:0.76 rmsd:0.84 AHM:0.76 LBcontacta:0.63 LBcontactb:0.73 LHM:0.64
id:0.03 blosum:0.06 compass:0.17 pearson:0.21

hit structure alignment

DALI alignment (Z-score: 15.9 Raw score:1743.00)

Query          1 ------ANFIEKITylgtPAIKAGNEHLEMIVVPEWgSNVISLVDktTNVQLLRepetae     54
d1jz7a4        1 paashaIPHLTTSE----MDFCIELGNKRWQFNRQS-GFLSQMWI--GDKKQLL------     47

Query         55 sfhdtptlYGIPILFPpNRISDGTF------sfRGRT--YHFDinekdkhnhlhgflyHE    106
d1jz7a4       48 --------TPLRDQFT-RAPLDNDIgvseatriDPNAwvERWK--------aaghyqaEA     90

Query        107 KWNVVTTKQTDEGVIVETEIDLSeLPHVqkqfpHHAVVRMTYTIK-ENTLFKHATVMNKG    165
d1jz7a4       91 ALLQCTADTLADAVLITTAHAWQ-HQGK-----TLFISRKTYRIDgSGQMAITVDVEVAS    144

Query        166 kEAFPW-GIGYHTTFIFPAesSLFSLTAD--QQWElderllptGKLMDVPyKEALheGMD    222
d1jz7a4      145 -DTPHPaRIGLNCQLAQVA--ERVNWLGLgpQENY-------pDRLTAAC-FDRW--DLP    191

Query        223 LrhKQLD---------DVFLSsyqkrggeNQAVIYhqhahiSIIYKADeqfKHWVVYNA-    272
d1jz7a4      192 L--SDMYtpyvfpsenGLRCG-------tRELNYG------PHQWRGD---FQFNISRYs    233

Query        273 ------------dgKQGYLCPEPYTWVtnAVNL--------DLPSsltgLQVLepgEETT    312
d1jz7a4      234 qqqlmetshrhllhAEEGTWLNIDGFH--MGIGgddswspsVSAE---fQLSA---GRYH    285

Query        313 AKSSITIEln    322
d1jz7a4      286 YQLVWCQK--    293

hit structure alignment

FAST alignment (Normalized score: 7.66 Raw score:2354.00)

Query          1 ------ANFIEKITYLGT-PAIKAGNEHLEMIVVPEWGSNVISLVDKT-TNVQLLREPET     52
d1jz7a4        1 PAASHAIPHLTTS-----EMDFCIELGNKRWQFNR-QSGFLSQMW---IGDKKQL-----     46

Query         53 AESFHDTPTL-YGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLY-------    104
d1jz7a4       47 ----------LTPLRDQFTR---------------------------------APLDNDI     63

Query        105 -----------------------HEKWNV--VTTKQTDEGVIVETEIDLSELPHVQKQFP    139
d1jz7a4       64 GVSEATRIDPNAWVERWKAAGHYQAEAALLQCTADTLADAVLITTAHA------------    111

Query        140 H-------HAVVRMTYTIK-ENTLFKHATVMNKGKE---AFPW-GIGYHTTFIFPAESSL    187
d1jz7a4      112 -WQHQGKTLFISRKTYRIDGSGQMAITVDVEV----ASDTPHPARIGLNCQLAQVA--ER    164

Query        188 FSLTADQQWELDERLLPTGKLMDVPYKEALH-------------------EGMDLRHKQL    228
d1jz7a4      165 VNWL---------------------------GLGPQENYPDRLTAACFDRWDLP------    191

Query        229 -------------DDVFLSSYQKRGGE---NQAVIYHQHAHI--SIIYKADEQF---KHW    267
d1jz7a4      192 LSDMYTPYVFPSENGLR----------CGTRELN--------YGPHQW------RGDFQF    227

Query        268 VVYNADG-----------------KQGYLCPEPYTWVTNAVN------------LDLPSS    298
d1jz7a4      228 NIS----RYSQQQLMETSHRHLLHAEEGTWLNIDG-------FHMGIGGDDSWSPSVSAE    276

Query        299 LTGLQVLEPG-EETTAKSSITIELN--    322
d1jz7a4      277 FQLS------AGRYHYQLVWC----QK    293

hit structure alignment

TMalign alignment (TM-score: 0.60 Raw score:194.55)

Query          1 ------ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAE     54
d1jz7a4        1 PAASHAIPHLTTSE----MDFCIELGNKRWQFNRQS-GFLSQMWI--GDKKQLL------     47

Query         55 SFHDTPTLYGIPILFPPNRI---SD--------GTFSFRGRTYHFDINEKDKHNHLHGFL    103
d1jz7a4       48 --------TPLRDQ-FTRAPLDNDIGVSEATRIDPNAW---VERWKAA------GHYQAE     89

Query        104 YHEKWNVVTTKQTDEGVIVETEIDLSELPHVQKQFPHHAVVRMTYTIK-ENTLFKHATVM    162
d1jz7a4       90 --AALLQCTADTLADAVLITTAHAW--QHQGK---TL-FISRKTYRIDGSGQMAITVDVE    141

Query        163 NKGKEAFPW-GIGYHTTFIFPAESSLFSL-TAD-QQWELDERLLPTGKLMDV-PYKEALH    218
d1jz7a4      142 V-ASDTPHPARIGLNCQLAQVA--ERVNWLGLGPQENY------P-DRLTAAC--FD-RW    188

Query        219 EGMDLRHKQL------DDVFLSSYQKRGGENQAVIYHQHAHISIIYKADEQFKHWVVYNA    272
d1jz7a4      189 D-LPLSDMYTPYVFPSENGLRC-G-----TRELNYG------PHQWRGD--F-QFNISRY    232

Query        273 -------------DGKQGYLCPEPYTWVTNAV------NLDLPSSLTGLQVLEPGEETTA    313
d1jz7a4      233 SQQQLMETSHRHLLHAEEGTWLNIDGFHMGIGGDDSWSPSVSAE--FQLSAG----RYHY    286

Query        314 KSSITIELN    322
d1jz7a4      287 QLVWCQK--    293

hit structure alignment

HHsearch alignment (Probability: 0.49 E-value:0.00)

DALI match       ************* .. ********  *******                          
Query         15 IKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTPTLYGIPILFPPNRI     74
d1jz7a4       17 FCIELGNKRWQFN-RQSGFLSQMWI--GDKKQLLTPLRDQFTRAPLD-------------     60

DALI match                                                        ***********
Query         75 SDGTFSFRGRTYHFDINEKDKHNHLH--GFLYHEKWN------------VVTTKQTDEGV    120
d1jz7a4       61 ----------------NDIGVSEATRIDPNAWVERWKAAGHYQAEAALLQCTADTLADAV    104

DALI match       *********..        ************... .......... ....
Query        121 IVETEIDLSELPHVQKQFPHHAVVRMTYTIKENTLFKHATVMNKGKEAFP    170
d1jz7a4      105 LITTAHAWQHQ------GKTLFISRKTYRIDGSG-QMAITVDVEVASDTP    147

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7: d1v7wa2 Chitobiose phosphorylase ChbP (svm: 1.557)

SCOP Superfamily: Galactose mutarotase-like | SCOP Fold: Supersandwich | SCOP Class: All beta proteins

Consensus: 0.65 Contact: 2310
Modified z-scores:
dali:1.00 daliz:1.00 gdtts:1.00 tmscore:1.00 rmsd:0.29 AHM:0.37 LBcontacta:1.00 LBcontactb:1.00 LHM:0.10
id:1.00 blosum:0.13 compass:0.09 pearson:1.00
Scaled scores:
dali:0.81 daliz:0.58 gdtts:0.67 tmscore:0.83 rmsd:0.87 AHM:0.78 LBcontacta:0.67 LBcontactb:0.73 LHM:0.55
id:0.06 blosum:0.09 compass:0.16 pearson:0.16

hit structure alignment

DALI alignment (Z-score: 15.1 Raw score:1594.20)

Query          1 -----------anfiekitylGTPAIKAGNEHLEMIVVPewgSNVISLVDKT-tNVQLLR     48
d1v7wa2        1 mkygyfdndnreyvitrpdvpAPWTNYLGTEKFCTVISH---NAGGYSFYNSpeYNRVTK     57

Query         49 EPETAESFhdtptlYGIPILFPpnrisdgtfsfrgrtyhfdinekdkhnHLHGFL----Y    104
d1v7wa2       58 FRPNATFD-----rPGHYVYLR------------------------dddSGDYWSiswqP     88

Query        105 HEK------WNVVTTKqtdegVIVETEIDLSelphvqkqfphHAVVRMTYTIK--ENTLF    156
d1v7wa2       89 VAKsldeaqYQIRHGL-----SYSKFQCDYN-----------GIHARKTLFVPkgEDAEI    132

Query        157 KHATVMNKGKEAFPWGIGYHTTFIF------------PAESSLFSLTadqqwelderllp    204
d1v7wa2      133 WDVVIKNTSDQVRTISAFSFVEFSFshiqsdnqnhqmSLYSAGTAYR-------------    179

Query        205 tgklmdvpykealhegmdlrhkqlddvflssyqkrggENQAVIYHQHAH----ISIIYKA    260
d1v7wa2      180 -------------------------------------PGLIEYDLYYNTddfeGFYYLAS    202

Query        261 DEQFKHWVVYNA-----------------------dgkqGYLCPEPYTWvtnavnldlps    297
d1v7wa2      203 TFDPDSYDGQRDrflglyrdeanplaveqgrcsnsaqtcYNHCGSLHKQ-----------    251

Query        298 sltglQVLEPGEETTAKSSITIELn    322
d1v7wa2      252 -----FTLQPGEEIRFAYILGIGK-    270

hit structure alignment

FAST alignment (Normalized score: 7.84 Raw score:2311.00)

Query          1 ANFIEKITYL---------------------GTPAIKAGNEHLEMIVVPEWGSN--VISL     37
d1v7wa2        1 ----------MKYGYFDNDNREYVITRPDVPAPWTNYLGTEKFCTVISH-----NAGGYS     45

Query         38 VDKTT----NVQLLREPETAESFHDTPTL---YGIPILFPPNRISDGTFSFRGRTYHFDI     90
d1v7wa2       46 FY---NSPEYNRVTKFRPNAT--------FDRPGHYVY----------------------     72

Query         91 NEKDKHNHLHGFLYH-----------------------EKWNVVTTKQTDEG-----VIV    122
d1v7wa2       73 ---------------LRDDDSGDYWSISWQPVAKSLDEAQYQ----------IRHGLSYS    107

Query        123 ETEIDLSELPHVQKQFP-HHAVVRMTYTIK--ENTLFKHATVMNKGKEAFPWGIGYHTTF    179
d1v7wa2      108 KFQCD------------YNGIHARKTLFVPKGEDAEIWDVVIKNTSDQVRTISAFSFVEF    155

Query        180 IF--------------PAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRH    225
d1v7wa2      156 --SFSHIQSDNQNHQMSLYSAGTAY-----------------------------------    178

Query        226 KQLDDVFLSSYQKRGG-ENQAVIYHQHAH----ISIIYKADE--QFKHWVVYNADGKQ--    276
d1v7wa2      179 ----------------RPGLIEYDLYYNTDDFEGFYYLAS--TFDPDSYD--------GQ    212

Query        277 -----------------------------GYLCPEPYTWVTNAVNLDLPSSLTGLQVLEP    307
d1v7wa2      213 RDRFLGLYRDEANPLAVEQGRCSNSAQTCYNHCGSLH----------------KQFTLQP    256

Query        308 GEETTAKSSITIELN---    322
d1v7wa2      257 GEEIRFAYILG----IGK    270

hit structure alignment

TMalign alignment (TM-score: 0.54 Raw score:174.31)

Query          1 -----------ANFIEK-----ITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTT-N     43
d1v7wa2        1 MKYGYFDNDNR---EYVITRPD--VPAPWTNYLGTEKFCTVISH-N--AGGYSFYNSPEY     52

Query         44 VQLLREPETAESFHDTPTLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFL    103
d1v7wa2       53 NRVTKFRPNAT-FD--R--PGHYVYLRD-------DD-----SGD------------YWS     83

Query        104 ----YHE------KWNVVTTKQTDEGVIVETEIDLSELPHVQKQFPHHAVVRMTYTIK--    151
d1v7wa2       84 ISWQPVAKSLDEAQYQIRHGL-----SYSKFQCDY-----------NGIHARKTLFVPKG    127

Query        152 ENTLFKHATVMNKGKEAFPWGIGYHTTFIF------------PAESSLFSLTADQQWELD    199
d1v7wa2      128 EDAEIWDVVIKNTSDQVRTISAFSFVEFSFSHIQSDNQNHQMSLYSAGTAYR--------    179

Query        200 ERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVFLSSYQKRGGENQAVIYHQHA-H--I-S    255
d1v7wa2      180 ------------------------------------P------GLIEYDLYYNTDDFEGF    197

Query        256 IIYKADEQFKHWVVYNA----D-------------------GKQGYLCPEPYTWVTNAVN    292
d1v7wa2      198 YYLASTFDPDSYDGQRDRFLGLYRDEANPLAVEQGRCSNSAQTCYNHCGSLHK-------    250

Query        293 LDLPSSLTGLQVLEPGEETTAKSSITIELN    322
d1v7wa2      251 ---------QFTLQPGEEIRFAYILGIG-K    270

hit structure alignment

HHsearch alignment (Probability: 0.22 E-value:0.05)

DALI match       *********** .. .........................                    
Query         17 AGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTPTLYGIPILFPPNRISD     76
d1v7wa2       28 LGTEKFCTVIS-HNAGGYSFYNSPEYNRVTKFRPNATFDRPGHYVYL-------------     73

DALI match                            ......                                 
Query         77 GTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDEGVIVETEIDLSELPHVQK    136
d1v7wa2       74 -------------------RDDDSGDYWSISWQ--PVAKSLDEAQYQIRHGLSYSKFQCD    112

DALI match         . ...........***********************
Query        137 QFPHHAVVRMTYTIKENTLFKHATVMNKGKEAFPWGIG    174
d1v7wa2      113 YNGIHARKTLFVPKGEDAEIWDVVIKNTSDQVRTISAF    150

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8: d1nkga3 Rhamnogalacturonase B, RhgB, N-terminal domain (svm: 1.574)

SCOP Superfamily: Galactose mutarotase-like | SCOP Fold: Supersandwich | SCOP Class: All beta proteins

Consensus: 0.63 Contact: 2251
Modified z-scores:
dali:1.00 daliz:1.00 gdtts:1.00 tmscore:1.00 rmsd:0.33 AHM:0.33 LBcontacta:1.00 LBcontactb:1.00 LHM:0.09
id:1.00 blosum:0.13 compass:0.18 pearson:1.00
Scaled scores:
dali:0.80 daliz:0.58 gdtts:0.64 tmscore:0.80 rmsd:0.85 AHM:0.81 LBcontacta:0.63 LBcontactb:0.74 LHM:0.61
id:0.05 blosum:0.09 compass:0.13 pearson:0.17

hit structure alignment

DALI alignment (Z-score: 15.3 Raw score:1605.60)

Query          1 ANFIEKITylgtPAIKAGNEH---LEMIVVPEWgSNVISLVDktTNVQLLREPetaesfh     57
d1nkga3        1 AFGITTSS----SAYVIDTNApnqLKFTVSRSS-CDITSIIH--YGTELQYSS-------     46

Query         58 dtptlYGIPILfppnrisdgtfsfrgrtyhfdinekdkhnhlhgflYHEKWNVvTTKQTD    117
d1nkga3       47 -----QGSHIG----------------------------------sGLGSATV-TATQSG     66

Query        118 EGVIVETEIDlselphvqkqfphhaVVRMTYTIK--ENTLFKHATVMNkgkeafpWGIGY    175
d1nkga3       67 DYIKVTCVTD---------------TLTQYMVVHngDPIIHMATYITA---epsiGELRF    108

Query        176 HTTFIFPaesSLFSltadqqwelderllptgklmdvpykealHEGM--dLRHK-------    226
d1nkga3      109 IARLNSD-llPNEE----------------------------PFGDvstTADGtaiegsd    139

Query        227 --------qLDDVFLSSYQkrgGENQAVIYHQhaHISIIYKADEQ--------fkHWVVY    270
d1nkga3      140 vflvgsetrSKFYSSERFI---DDQRHCIAGD--AHRVCMILNQYesssggpfhrDINSN    194

Query        271 NAdgkQGYLCPEPY-TWVTNAVNldlpssltgLQVLepgeeTTAK-SSITIELN------    322
d1nkga3      195 NG---GSYNALYWYmNSGHVQTE---------SYRM-----GLHGpYSMYFSRSgtpsts    237

Query        323 -------------    323
d1nkga3      238 idtsffadldikg    250

hit structure alignment

FAST alignment (Normalized score: 7.44 Raw score:2110.00)

Query          1 ANFIEKITYLGT-PAIKAGNE----HLEMIVVPEWGSNVISLVDKT-TNVQLLREPETAE     54
d1nkga3        1 AFGITTS-----SSAYVIDT-NAPNQLKFTVSR-SSCDITSII---HYGTELQY------     44

Query         55 SFHDTPTL--YGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLY----HEKW    108
d1nkga3       45 --------SSQGSH--------------------------------------IGSGLGSA     58

Query        109 NVVTTKQTDEGVIVETEIDLSELPHVQKQFPHHA-VVRMTYTIK--ENTLFKHATVMNKG    165
d1nkga3       59 T-VTATQSGDYIKVTCVT----------------DTLTQYMVVHNGDPIIHMATYI----     97

Query        166 KEAFP------WGIGYHTTFIFPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHE    219
d1nkga3       98 -----TAEPSIGELRFIARLN---------------------------------------    113

Query        220 GMDLRHKQLD---------------------------------------DVFLSSYQKRG    240
d1nkga3      114 ----------SDLLPNEEPFGDVSTTADGTAIEGSDVFLVGSETRSKFYSSER-------    156

Query        241 GE----NQAVIYHQHAHISIIYKADEQFKHW---------------VVYNADGKQGYLCP    281
d1nkga3      157 --FIDDQRHCIAGD--AHRVCMIL-------NQYESSSGGPFHRDINSNNG---GSYNAL    202

Query        282 EPYTWVTNAV---NLDLPSSLTGLQVLEPGEETT------AKSSITIELN----------    322
d1nkga3      203 YWYMN-----SGHVQTES----------------YRMGLHGPYSMYFSR-SGTPSTSIDT    240

Query        323 ----------    323
d1nkga3      241 SFFADLDIKG    250

hit structure alignment

TMalign alignment (TM-score: 0.54 Raw score:174.13)

Query          1 ANFIEKITYLGTPAIKAGNEH---LEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFH     57
d1nkga3        1 AFGITTSS----SAYVIDTNAPNQLKFTVSRSS-CDITSIIH--YGTELQYSS-------     46

Query         58 DTPTLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTD    117
d1nkga3       47 -----QGSHIG-------------------------------S---GLGSATV-TATQSG     66

Query        118 EGVIVETEIDLSELPHVQKQFPHHAVVRMTYTIK--ENTLFKHATVMN--KGKEAFPWGI    173
d1nkga3       67 DYIKVTCVTD---------------TLTQYMVVHNGDPIIHMATYITAEP-----SIGEL    106

Query        174 GYHTTFIFPAESSLFSLTA-DQQ------WELDERLLP--TGKLMDVPYKEALHEGMDLR    224
d1nkga3      107 RFIARLNSDL-LPNEEPFGD-VSTTADGT--AIEGSDVFL------------------VG    144

Query        225 HKQLDDV-FLSSYQKRGGENQAVIYHQHAHISIIYKA-DE--QF-----KHWVVYNADGK    275
d1nkga3      145 SETRSKFYSSERFI--D-DQRHCIAGD-A-HRVCMILNQYESSSGGPFHRDINSNNG-G-    197

Query        276 QGYLCPEPYTWVTNAVNLDLPSSLTGLQVLEPGEETTAKSSITIELN-------------    322
d1nkga3      198 S-YNALYWYMNS-GH--V-QTE----SYRM----GLHGPYSMYFSRSGTPSTSIDTSFFA    244

Query        323 ------    323
d1nkga3      245 DLDIKG    250

hit structure alignment

HHsearch alignment (Probability: 0.02 E-value:0.34)

DALI match       ..   .........  .****** .. ********. 
Query          7 ITYLGTPAIKAGNE--HLEMIVVPEWGSNVISLVDKT     41
d1nkga3        4 ITTSSSAYVIDTNAPNQLKFTVS-RSSCDITSIIHYG     39

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9: d1ug9a4 Glucodextranase, domain N (svm: 1.634)

SCOP Superfamily: Galactose mutarotase-like | SCOP Fold: Supersandwich | SCOP Class: All beta proteins

Consensus: 0.58 Contact: 2145
Modified z-scores:
dali:1.00 daliz:1.00 gdtts:1.00 tmscore:1.00 rmsd:0.33 AHM:0.39 LBcontacta:1.00 LBcontactb:1.00 LHM:0.12
id:0.98 blosum:0.04 compass:0.15 pearson:1.00
Scaled scores:
dali:0.78 daliz:0.52 gdtts:0.60 tmscore:0.76 rmsd:0.84 AHM:0.75 LBcontacta:0.61 LBcontactb:0.71 LHM:0.48
id:0.01 blosum:0.06 compass:0.17 pearson:0.18

hit structure alignment

DALI alignment (Z-score: 12.8 Raw score:1410.90)

Query          1 ------anfiekityLGTPAIKAGN----EHLEMIVVPewgSNVISLVDKTTNVQLLRep     50
d1ug9a4        1 taeppgspgaaatwtKGDKEGVGTSlnpaSKVWYTLTE---GTMSEVYYPHADTPNTR--     55

Query         51 etaesfhdtptlyGIPILFPpnrisdgtfsfrgrtyhfdinekdkhnHLHGFLYHE-KWN    109
d1ug9a4       56 -------------ELQFAVS-------------------------dgTSAQRESEQtTRT     77

Query        110 VVTTKQTdeGVIVETEIDLSELphvqkqfphHAVVRMTYTIK--ENTLFKHATVMNKGke    167
d1ug9a4       78 VELADPK--ALSYRQTTTDNAG---------RWRLTKTYVTDprRSTVMLGVTFEVLD--    124

Query        168 AFPWGIGYHTTF----IFPAesSLFSLTadqqwelderllptgklmdvpykealhegmdl    223
d1ug9a4      125 GGDYQLFVLSDPslagTSGG--DTGSVT--------------------------------    150

Query        224 rhkqlddvflssyqkrggENQAVIYHQH---AHISIIYKADEQFKHWVVY-NADG-----    274
d1ug9a4      151 ------------------DGALLASDLAdaaTPVATALVSSVGFGAVANGyVGTSdgwtd    192

Query        275 --------------kqGYLCPEPYTWvtnavnldlpssltgLQVLepgEETTAKSSITIE    320
d1ug9a4      193 laadgrldnasatagpGNISQTGQIP---------------LAAG---GKTEFSLALGFG    234

Query        321 LN------------------------------------    322
d1ug9a4      235 ADtaealatakaslgtgykkvsksytgewkkylnslda    272

hit structure alignment

FAST alignment (Normalized score: 6.96 Raw score:2060.00)

Query          1 ANFIEKITYLGTP-------------------AIKAGN----EHLEMIVVPEW-GSNVIS     36
d1ug9a4        1 -------------TAEPPGSPGAAATWTKGDKEGVGTSLNPASKVWYTL----TEGTMSE     43

Query         37 LVDKT---TNVQLLREPETAESFHDTPTLY--GIPILFPPNRISDGTFSFRGRTYHFDIN     91
d1ug9a4       44 VY---YPHADTPN-----------------TRELQFA-----------------------     60

Query         92 EKDKHNHLHG--------FLYH-EKWNVVTTKQTDEGVIVETEIDLSELPHVQKQFPH--    140
d1ug9a4       61 ----------VSDGTSAQRESEQTTRTV-ELADP-KALSYRQTTT-------------DN     95

Query        141 --HAVVRMTYTIK---ENTLFKHATVMNKGKEAFPWGIGYHTTFIFPA-----ESSLFSL    190
d1ug9a4       96 AGRWRLTKTYVT-DPRRSTVMLGVTFEVLD--GGDYQLFVLSDPS---LAGTSGGDTGSV    149

Query        191 TADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVFLSSYQKRGG-ENQAVIYH    249
d1ug9a4      150 ---------------------------------------------------TDGALLASD    158

Query        250 ---QHAHISIIYKADE--QFKHWVVYNADGKQ---------------------------G    277
d1ug9a4      159 LADAATPVATALVS--SVGFGAVAN-------GYVGTSDGWTDLAADGRLDNASATAGPG    209

Query        278 YLCPEPYTWVTNAVNLDLPSSLTGLQ--VLEPGEETTAKSSITIELN-------------    322
d1ug9a4      210 NISQTGQ-------------------IPLAAG-GKTEFSLALGFGA-DTAEALATAKASL    248

Query        323 ------------------------    323
d1ug9a4      249 GTGYKKVSKSYTGEWKKYLNSLDA    272

hit structure alignment

TMalign alignment (TM-score: 0.50 Raw score:161.57)

Query          1 --------------ANFIEKITYLGTPAIKAGN--E--HLEMIVVPEWGSNVISLVDKTT     42
d1ug9a4        1 TAEPPGSPGAAATW--------TKGDKEGVGTSLNPASKVWYTLT--E-GTMSEVYYPHA     49

Query         43 NVQLLREPETAESFHDTPTLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGF    102
d1ug9a4       50 DTPNTR---------------ELQFAVS--DG--T--------------------S-AQR     69

Query        103 LYHE-KWNVVTTKQTDEGVIVETEIDLSELPHVQKQFPHHAVVRMTYTIKE--NTLFKHA    159
d1ug9a4       70 ESEQTTRTVELADPK--ALSYRQTTTD--N--AG----R-WRLTKTYVTDPRRSTVMLGV    118

Query        160 TVMNKGKEAFPWGIGYHTTFIF--PAESSLFSLTADQQWELDERLLPTGKLMDVPYKEAL    217
d1ug9a4      119 TFEV-L-DGGDYQLFVLSDPSLAGTSGGDTGSVT--------------------------    150

Query        218 HEGMDLRHKQLDDVFLSSYQKRGGENQAVIYHQ-H--AHISIIYKADEQFKHWVVYNA-D    273
d1ug9a4      151 ------------------------DGALLASDLADAATPVATALVSSVGFGAVANGYVGT    186

Query        274 -------------------GKQGYLCPEPYTWVTNAVNLDLPSSLTGLQVLEPGEETTAK    314
d1ug9a4      187 SDGWTDLAADGRLDNASATAGPGNISQTGQI---------------P-LAAG--GKTEFS    228

Query        315 SSITIELN------------------------------------    322
d1ug9a4      229 LALGFGADTAEALATAKASLGTGYKKVSKSYTGEWKKYLNSLDA    272

hit structure alignment

HHsearch alignment (Probability: 0.02 E-value:0.83)

DALI match        ...........**************. ................  ******        
Query        140 HHAVVRMTYTIKENTLFKHATVMNKGKEAFPWGIGYHTTFIFPAESSLFSLTADQQWELD    199
d1ug9a4       99 WRLTKTYVTDPRRSTVMLGVTFEVLDGGDYQLFVLSDPSLAGTSGGDTGSVTDGALLASD    158

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10: d1lf6a2 Bacterial glucoamylase, N-terminal domain (svm: 1.590)

SCOP Superfamily: Galactose mutarotase-like | SCOP Fold: Supersandwich | SCOP Class: All beta proteins

Consensus: 0.56 Contact: 2108
Modified z-scores:
dali:1.00 daliz:1.00 gdtts:1.00 tmscore:1.00 rmsd:0.35 AHM:0.39 LBcontacta:1.00 LBcontactb:1.00 LHM:0.13
id:0.94 blosum:0.02 compass:0.15 pearson:1.00
Scaled scores:
dali:0.79 daliz:0.54 gdtts:0.61 tmscore:0.76 rmsd:0.83 AHM:0.76 LBcontacta:0.64 LBcontactb:0.74 LHM:0.49
id:-0.01 blosum:0.05 compass:0.16 pearson:0.17

hit structure alignment

DALI alignment (Z-score: 12.6 Raw score:1424.30)

Query          1 -------------anfiekitylgTPAI-KAGN----EHLEMIVVPewgSNVISLVDKTT     42
d1lf6a2        1 sikidrfnnisavngpgeedtwasAQKQgVGTAnnyvSKVWFTLAN---GAISEVYYPTI     57

Query         43 NVQLLRepetaesfhdtptlyGIPILFPpnrisdgtfsfrgrtyhfdinekdkhNHLHGF    102
d1lf6a2       58 DTADVK---------------EIKFIVT------------------------dgKSFVPD     78

Query        103 LYH-EKWNVvTTKQTDegVIVETEIDLSELphvqkqfphHAVVRMTYTIK--ENTLFKHA    159
d1lf6a2       79 ETKdAISKV-EKFTDK-sLGYKLVNTDKKG---------RYRITKDIFTDvkRNSLIMKA    127

Query        160 TVMNKGkEAFP-WGIGYHTTF----IFPAesSLFSLTAdqqwelderllptgklmdvpyk    214
d1lf6a2      128 KFEALE-GSIHdYKLYLAYDPhiknQGSY--NEGYVIK----------------------    162

Query        215 ealhegmdlrhkqlddvflssyqkrGGENQAVIYHQhaHISIIYKADEQFKHWVVYNADG    274
d1lf6a2      163 ------------------------aNNNEMLMAKRD--NVYTALSSNIGWKGYSIGYYKV    196

Query        275 -------------------kqGYLCPEPYTwvtnavnldlpssltGLQVlepgeeTTAKS    315
d1lf6a2      197 ndimtdldenkqmtkhydsarGNIIEGAEI---------------DLTK-----nSEFEI    236

Query        316 SITIELN----------------------------------    322
d1lf6a2      237 VLSFGQSdseaaktaletlgedynnlknnyidewtkycntl    277

hit structure alignment

FAST alignment (Normalized score: 6.32 Raw score:1887.00)

Query          1 ANFIEKITYLGTP---------------------------AIKAGN-----EHLEMIVVP     28
d1lf6a2        1 -------------SIKIDRFNNISAVNGPGEEDTWASAQKQGVGT-ANNYVSKVWFTL--     44

Query         29 EWGSNVISLVDKTT----NVQLLREPETAESFHDTPTL-YGIPILFPPNRISDGTFSFRG     83
d1lf6a2       45 -ANGAISEVY----YPTIDTAD----------------VKEIKFI---------------     68

Query         84 RTYHFDINEKDKHNHLHGFLY-------------HEKWNVVTTKQTD----EGVIVETEI    126
d1lf6a2       69 ---------------------VTDGKSFVPDETKDAISKVE------KFTDKSLGYKLVN    101

Query        127 DLSELPHVQKQF--PHHAVVRMTYTIK---ENTLFKHATVMNKGKEAF---PWGIGYHTT    178
d1lf6a2      102 T-----------DKKGRYRITKDIFT-DVKRNSLIMKAKFEALEG---SIHDYKLYLAYD    146

Query        179 FIFPA-----ESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVFL    233
d1lf6a2      147 PH---IKNQGSYNEGYV-------------------------------------------    160

Query        234 SSYQKRG----GENQAVIYHQHAHISIIYKADE--QFKHWVVYNADGKQ-----------    276
d1lf6a2      161 -------IKANNNEMLMAKR--DNVYTALSS--NIGWKGYSIG------YYKVNDIMTDL    203

Query        277 --------------GYLCPEPYTWVTNAVNLDLPSSLTGLQVLEPGEE------TTAKSS    316
d1lf6a2      204 DENKQMTKHYDSARGNIIEGAE--------------------------IDLTKNSEFEIV    237

Query        317 ITIELN-----------------------------------    322
d1lf6a2      238 LSFGQ-SDSEAAKTALETLGEDYNNLKNNYIDEWTKYCNTL    277

hit structure alignment

TMalign alignment (TM-score: 0.50 Raw score:161.01)

Query          1 ----------------------ANFIEKITYLGTPAIKAGN--E--HLEMIVVPEWGSNV     34
d1lf6a2        1 SIKIDRFNNISAVNGPGEEDTW--------ASAQKQGVGTANNYVSKVWFTLA--N-GAI     49

Query         35 ISLVDKTTNVQLLREPETAESFHDTPTLYGIPILFPPNRISDGTFSFRGRTYHFDINEKD     94
d1lf6a2       50 SEVYYPTIDTADVK---------------EIKFIVT--DGK-S----------F------     75

Query         95 KHNHLHGFLYH-EKWNVVTTKQTDEGVIVETEIDLSELPHVQKQFPHHAVVRMTYTIK--    151
d1lf6a2       76 ----V-PDETKDAISKVEKFTDK--SLGYKLVNTD--K--KG--R---YRITKDIFTDVK    119

Query        152 ENTLFKHATVMNKGKEAFP-WGIGYHTTFI----FPAESSLFSLTADQQWELDERLLPTG    206
d1lf6a2      120 RNSLIMKAKFEALE-GSIHDYKLYLAYDPHIKNQGSY--NEGYVI---------------    161

Query        207 KLMDVPYKEALHEGMDLRHKQLDDVFLSSYQKRGGENQAVIYHQHAHISIIYKADEQFKH    266
d1lf6a2      162 -----------K-----------------A---NNNEMLMAKR-D-NVYTALSSNIGWKG    188

Query        267 WVVYNA-DG------------------KQGYLCPEPYTWVTNAVNLDLPSSLTGLQVLEP    307
d1lf6a2      189 YSIGYYKVNDIMTDLDENKQMTKHYDSARGNIIEGAEI---------------DLTK---    230

Query        308 GEETTAKSSITIELN----------------------------------    322
d1lf6a2      231 --NSEFEIVLSFGQSDSEAAKTALETLGEDYNNLKNNYIDEWTKYCNTL    277

hit structure alignment

HHsearch alignment (Probability: 0.02 E-value:0.41)

DALI match        ...........**************.....***
Query        140 HHAVVRMTYTIKENTLFKHATVMNKGKEAFPWGI    173
d1lf6a2      108 YRITKDIFTDVKRNSLIMKAKFEALEGSIHDYKL    141

hit structures.

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11: d1h54a2 Lactobacillus maltose phosphorylase, N-terminal domain (svm: 1.465)

SCOP Superfamily: Galactose mutarotase-like | SCOP Fold: Supersandwich | SCOP Class: All beta proteins

Consensus: 0.57 Contact: 1879
Modified z-scores:
dali:1.00 daliz:1.00 gdtts:1.00 tmscore:1.00 rmsd:0.32 AHM:0.38 LBcontacta:1.00 LBcontactb:1.00 LHM:0.12
id:0.99 blosum:0.07 compass:0.06 pearson:1.00
Scaled scores:
dali:0.79 daliz:0.52 gdtts:0.60 tmscore:0.76 rmsd:0.85 AHM:0.77 LBcontacta:0.67 LBcontactb:0.72 LHM:0.49
id:0.01 blosum:0.06 compass:0.11 pearson:0.12

hit structure alignment

DALI alignment (Z-score: 10.8 Raw score:1228.40)

Query          1 ------------anfiekitYLGTPA--IKAGNEHLEMIVVP---ewgsnvISLVDKTT-     42
d1h54a2        1 mkrifevqpwnvithtfdpkDKRLQEsmTSLGNGYMGMRGDFeegysgdslQGIYLGGVw     60

Query         43 --------------------NVQLLRepetaesfhdtptlygIPILFPpnrisdgtfsfr     82
d1h54a2       61 ypdktrvgwwkngypkyfgkVVNAVN---------------fIKLPIE------------     93

Query         83 grtyhfdinekdkhnhlhGFLYHE----kwNVVTTKQTdeGVIVETEIDLSelphvqkQF    138
d1h54a2       94 ---------------ingEPVDLAkdkisdFTLDLDMH--QGVLNRSFVVE-------RG    129

Query        139 PHHAVVRMTYTIK---ENTLFKHATVMNKGKEAFPWGIGYHTTFIF---------paesS    186
d1h54a2      130 AVRVALNFQRFLSvaqPELSVQKVTVKNLSDAEVDVTLKPSIDADVmneeanydrfwdvL    189

Query        187 LFSLTadqqwelderllptgklmdvpykealhegmdlrhkqlddvflssyqkrggeNQAV    246
d1h54a2      190 ATDQQ--------------------------------------------------aDRGS    199

Query        247 IYHQH---------AHISIIYKADE--QFKHWVVYNAdgkqgyLCPEPYTWvtnavnldl    295
d1h54a2      200 IVAKTtpnpfgtprFTSGMEMRLVTdlKNVAITQPNE------KEVTTAYT---------    244

Query        296 pssltglQVLEPGEETTAKSSITIELN---    322
d1h54a2      245 -------GKLAPQASAELEKRVIVVTSrdy    267

hit structure alignment

FAST alignment (Normalized score: 6.04 Raw score:1772.00)

Query          1 ANFIEKITYLGTP---------------------------AIKAGNEHLEMIVVPEWGSN     33
d1h54a2        1 -------------MKRIFEVQPWNVITHTFDPKDKRLQESMTSLGNGYMGMRG-------     40

Query         34 V-----------ISLVDKTTNVQLLREPETAESFHDTPTL--------------------     62
d1h54a2       41 -DFEEGYSGDSLQGIYLGG---------------------VWYPDKTRVGWWKNGYPKYF     78

Query         63 -------YGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNV-----    110
d1h54a2       79 GKVVNAVNFIKLP------------------------------------------IEING     96

Query        111 --------------VTTKQTD-EGVIVETEIDLSELPHVQKQ---FPHHAVVRMTYTI--    150
d1h54a2       97 EPVDLAKDKISDFTLDLD---MHQGVLNRSFV----------VERGAVRVALNFQRFLSV    143

Query        151 -KENTLFKHATVMNKGKEAFPWGIGYHTTFIFPAES-----------------SLFSLTA    192
d1h54a2      144 AQPELSVQKVTVKNLSDAEVDVTLKPSI--------DADVMNEEANYDRFWDVLATDQ--    193

Query        193 DQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVFLSSYQKRGGE--NQAVIYHQ    250
d1h54a2      194 --------------------------------------------------QADRGSIVA-    202

Query        251 ----------HAHISIIYK-ADE-QFKHWVVYNADGKQGY---LCPEPYTWVTNAVNLDL    295
d1h54a2      203 KTTPNPFGTPRFTSGMEMRLVTDLKNVAITQ---------PNEKEVTTA-----------    242

Query        296 PSSLTGLQVLEPGEETTAKSSITIELN-----    322
d1h54a2      243 -----YTGKLAPQASAELEKRVIVV--TSRDY    267

hit structure alignment

TMalign alignment (TM-score: 0.50 Raw score:160.23)

Query          1 ---------ANFIEK------ITYLGTPA--IKAGNEHLEMIVVP--EWGS-NVISLVDK     40
d1h54a2        1 MKRIFEVQP--WNVITHTFDP-KDKRLQESMTSLGNGYMGMRGDFEEGYSGDSLQGIYLG     57

Query         41 TTN---------------------VQLLREPETAESFHDTPTLYGIPILFPPNRISDGTF     79
d1h54a2       58 GVWYPDKTRVGWWKNGYPKYFGKVVNAVN--------------FIKLPIEI---------     94

Query         80 SFRGRTYHFDINEKDKHNHLHGFLYHEK-W--NVVTTKQTDEGVIVETEIDLSELPHVQK    136
d1h54a2       95 --------N---------G-EPVDLAKDKISDFTLDLDMH--QGVLNRSFVVE----RG-    129

Query        137 QFPHHAVVRMTYTIK---ENTLFKHATVMNKGKEAFPWGIGYHTTF-I---------FPA    183
d1h54a2      130 --AVRVALNFQRFLSVAQPELSVQKVTVKNLSDAEVDVTLKPSIDADVMNEEANYDRFWD    187

Query        184 ESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVFLSSYQKRGGEN    243
d1h54a2      188 -VLATDQQ------------------------------------------A--------D    196

Query        244 QAVIYHQ---------HAHISIIYKADE-Q-FKHWVVYNADGKQGYLCPEPYTWVTNAVN    292
d1h54a2      197 RGSIVAKTTPNPFGTPRFTSGMEMRLVTDLKNVAITQPN--E----KEVTTAYT------    244

Query        293 LDLPSSLTGLQVLEPGEETTAKSSITIEL---N    322
d1h54a2      245 ----------GKLAPQASAELEKRVIVVTSRDY    267

hit structure alignment

HHsearch alignment (Probability: 0.01 E-value:0.61)

DALI match                            
Query        140 HHAVVRMTYTIKENTLFKHAT    160
d1h54a2      118 GVLNRSFVVERGAVRVALNFQ    138

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12: d1txka2 Glucans biosynthesis protein G (MdoG, OpgG), N-terminal domain (svm: 1.429)

SCOP Superfamily: Galactose mutarotase-like | SCOP Fold: Supersandwich | SCOP Class: All beta proteins

Consensus: 0.44 Contact: 2474
Modified z-scores:
dali:1.00 daliz:1.00 gdtts:1.00 tmscore:1.00 rmsd:0.43 AHM:0.47 LBcontacta:1.00 LBcontactb:1.00 LHM:0.11
id:1.00 blosum:0.32 compass:0.07 pearson:1.00
Scaled scores:
dali:0.73 daliz:0.41 gdtts:0.46 tmscore:0.67 rmsd:0.80 AHM:0.73 LBcontacta:0.61 LBcontactb:0.69 LHM:0.52
id:0.06 blosum:0.12 compass:0.15 pearson:0.16

hit structure alignment

DALI alignment (Z-score: 11.8 Raw score:1411.00)

Query          1 --------------------------------------------------ANFIEKITYL     10
d1txka2        1 fsiddvakqaqslagkgyetpksnlpsmkyadyqqiqfnhdkaywnnlktPFKLEFYHQG     60

Query         11 ------------------------------------------GTPAIKAGNEH-------     21
d1txka2       61 myfdtpvkinevtatavkrikyspdyftfgdvqhdkdtvkdlGFAGFKVLYPInskdknd    120

Query         22 lEMIVVpeWGSNViSLVDKTtNVQLLrepetaesfhdtptlyGIPI-LFPPNRIsdgtfs     80
d1txka2      121 eIVSML--GASYF-RVIGAG-QVYGL----------------SARGlAIDTALP------    154

Query         81 frgrtyhfdinekdkhnHLHGFLyheKWNVVTTKQT---DEGVIVETEIDLSelphvqkq    137
d1txka2      155 -----------------SGEEFP---RFKEFWIERPkptDKRLTIYALLDSP--------    186

Query        138 fphHAVVRMTYTIKE---NTLFKHATVMNKGkeaFPWGIG-YHTTFiFPAES--------    185
d1txka2      187 ---RATGAYKFVVMPgrdTVVDVQSKIYLRD---KVGKLGvAPLTS-MFLFGpnqpspan    239

Query        186 ---------SLFSLTADQqwelderllptgklmdvpykealHEGMDLRHK--QLDDVFLS    234
d1txka2      240 nyrpelhdsNGLSIHAGN---------------------geWIWRPLNNPkhLAVSSFSM    278

Query        235 SYqkrggENQAVIYHQHA--------------hISIIYKADEQF--KHWVVYNADGK---    275
d1txka2      279 EN-----PQGFGLLQRGRdfsrfedlddrydlrPSAWVTPKGEWgkGSVELVEIPTNdet    333

Query        276 QGYLCPEPYTwvtnavnldlpssltGLQVlEPGEETTAKSSITIELN------    322
d1txka2      334 NDNIVAYWTP---------------DQLP-EPGKEMNFKYTITFSRDedklha    370

hit structure alignment

FAST alignment (Normalized score: 5.03 Raw score:1736.00)

Query          1 --------------------------------------------------ANFIEKITYL     10
d1txka2        1 FSIDDVAKQAQSLAGKGYETPKSNLPSMKYADYQQIQFNHDKAYWNNLKTPFKLEFY---     57

Query         11 GT-----------------------------------------------PAIKAGNEHL-     22
d1txka2       58 --HQGMYFDTPVKINEVTATAVKRIKYSPDYFTFGDVQHDKDTVKDLGFAGFKVLY---P    112

Query         23 ---------EMIVVPE-WGSNVISLVDKTTNVQLLREPETAESFHDTPTLYGIP-ILFPP     71
d1txka2      113 INSKDKNDEIVSM---LGASY-FRVIGAGQVYG-----------------LSARGLAIDT    151

Query         72 NRISDGTFSFRGRTYHFDINEKDKH--NHLHGFLYHEKWNVVTTKQT-------------    116
d1txka2      152 -------------------------ALPSGEE---------------FPRFKEFWIERPK    171

Query        117 --DEGVIVETEIDLSELPHVQKQFPH--HAVVRMTYTIKE-----NTLFKHATVMNKGKE    167
d1txka2      172 PTDKRLTIYALLD-------------SPRATGAYKFVV--MPGRDTVVDVQSKIYL--RD    214

Query        168 AFPWGI----GYHTTFIFPAES--------------------SLFSLTADQQWELDERLL    203
d1txka2      215 KV----GKLGVAPLTSMF----LFGPNQPSPANNYRPELHDSNGLSI-------------    253

Query        204 PTGKLMDVPYKEALH-------EGMDL--RHKQLDDVFLSSYQKRGGE-----NQAVIYH    249
d1txka2      254 ---------------HAGNGEWIWRPLNNPKHLAVSSF----------SMENPQGFGLLQ    288

Query        250 QHA----------------HISIIYKADEQF--KHWVVYNADGKQG--------YLCPEP    283
d1txka2      289 R--GRDFSRFEDLDDRYDLRPSAWVTPKGEWGKGSVELVEI-----PTNDETNDNIVAYW    341

Query        284 YTWVTNAVNLDLPSSLTGL--QVLEPGEETTAKSSITIELN-------    322
d1txka2      342 T------------------PDQLPEPGKEMNFKYTITFSR-DEDKLHA    370

hit structure alignment

TMalign alignment (TM-score: 0.55 Raw score:175.69)

Query          1 -------------------------------------------------ANFIEKITYLG     11
d1txka2        1 FSIDDVAKQAQSLAGKGYETPKSNLPSMKYADYQQIQFNHDKAYWNNLKTPFKLEFYHQG     60

Query         12 -------------------------------------------TPAIKAGN-EH------     21
d1txka2       61 MYFDTPVKINEVTATAVKRIKYSPDYFTFGDVQHDKDTVKDLGFAGFKVLYPINSKDKND    120

Query         22 LEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTPTLYGIPILFPPNRISDGTFSF     81
d1txka2      121 EIVSML--GASYF-RVIGAGQ-VYGL----------------SARGLAIDTAL-------    153

Query         82 RGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQT--DEGVIVETEIDLSELPHVQKQFP    139
d1txka2      154 -------------P-S-GEEFPR--FKEFWIERPKPTDKRLTIYALLDS-----P---R-    187

Query        140 HHAVVRMTYTIK-E-NTLFKHATVMNKGKEAFP-WGIGYHTTFIFPAE------------    184
d1txka2      188 --ATGAYKFVVMPGRDTVVDVQSKIYLR--DKVGKLGVAPLTSMFLFGPNQPSPANNYRP    243

Query        185 S-S--LFSLTADQ--QWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVFLSSYQKR    239
d1txka2      244 ELHDSNGLSIHAGNG-------------------EW-IW-RPLNNPKHLAVSSFSMEN--    280

Query        240 GGENQAVIYHQ-H----------AHISIIYKAD--EQF-KHWVVYNADGKQG--YLCPEP    283
d1txka2      281 PQGFGLLQRGRDFSRFEDLDDRYDLRPSAWVTPKGEWGKGSVELVEIPTNDETNDNIVAY    340

Query        284 YTWVTNAVNLDLPSSLTGLQVLEPGEETTAKSSITIELN-----    322
d1txka2      341 WTP-------------D-QLPEPGKEMNFKYTITFSRDEDKLHA    370

hit structure alignment

HHsearch alignment (Probability: 0.04 E-value:0.17)

DALI match                                                                   
Query        177 TTFIFPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVFLSSY    236
d1txka2      129 SYFRVIGAGQVYGLSARGLAI--DTALPSGEEFPRFKEFWIERPKPTDKRLTIYALLDSP    186

DALI match                               
Query        237 QKRGGENQAVIYHQHAHISIIYKA    260
d1txka2      187 RATGAYKFVV--MPGRDTVVDVQS    208

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13: d1j0ma3 Xanthan lyase (svm: 1.523)

SCOP Superfamily: Galactose mutarotase-like | SCOP Fold: Supersandwich | SCOP Class: All beta proteins

Consensus: 0.51 Contact: 2335
Modified z-scores:
dali:1.00 daliz:1.00 gdtts:1.00 tmscore:1.00 rmsd:0.43 AHM:0.51 LBcontacta:1.00 LBcontactb:1.00 LHM:0.09
id:0.86 blosum:0.00 compass:0.02 pearson:1.00
Scaled scores:
dali:0.74 daliz:0.43 gdtts:0.50 tmscore:0.69 rmsd:0.80 AHM:0.71 LBcontacta:0.56 LBcontactb:0.64 LHM:0.56
id:-0.02 blosum:0.03 compass:0.10 pearson:0.12

hit structure alignment

DALI alignment (Z-score: 11.8 Raw score:1314.40)

Query          1 -ANFIEKITylgtPAIKAGNE-HLEMIVVPE--------------------WGSNViSLV     38
d1j0ma3        1 pNLYKQYAA----MDRAVLQRpGFALGLALYstrissyesinsengrgwytGAGAT-YLY     55

Query         39 DkTTNVQllrepetaesfhdTPTLYgIPILFPPnrisdgtfsfrgrtyhfdinekdkhnh     98
d1j0ma3       56 N-QDLAQ----ysedywptvDAYRI-PGTTVAS---------------------------     82

Query         99 lHGFL--yhekwNVVTTKQTD-EGVIVETEIDLSElphvqkqfpHHAVVRMTYTIKENTL    155
d1j0ma3       83 -GTPIasgtgtsSWTGGVSLAgQYGASGMDLSYGA---------YNLSARKSWFMFDDEI    132

Query        156 FKHAT-VMNKgkeaFPWGIGYHTTFIFPAE-SSLFSLTadqqwelderllptgklmdvpy    213
d1j0ma3      133 VALGSgISST---aGIPIETVVDNRKLNGAgDNAWTAN----------------------    167

Query        214 kealHEGMDLRhKQLDDVFLSsyqkrggENQAVIYHQHAH-ISIIYKADEqfKHWVVYNA    272
d1j0ma3      168 ----GAALSTG-LGVAQTLTG-------VNWVHLAGNTADgSDIGYYFPG-gATLQTKRE    214

Query        273 D------------------gKQGYLCPEPYTWvtnavnldlpssltgLQVLepgeETTAK    314
d1j0ma3      215 ArtgtwkqinnrpatpstavTRNYETMWIDHG---------------TNPS----GASYG    255

Query        315 SSITIELN----------    322
d1j0ma3      256 YVLLPNKTsaqvgayaad    273

hit structure alignment

FAST alignment (Normalized score: 6.02 Raw score:1786.00)

Query          1 ANFIEKITYLG---TPAIKAGNEHLEMIVVPE----------------------WGSNVI     35
d1j0ma3        1 PNLYKQ-----YAAMDRAVLQRPGFALGLA--LYSTRISSYESINSENGRGWYTGAGAT-     52

Query         36 SLVD---KTTNVQLLREPETAESFHDTPT--------------LYGIPILFPPNRISDGT     78
d1j0ma3       53 ----YLYNQDL------------------AQYSEDYWPTVDAYRIPGT------------     78

Query         79 FSFRGRTYHFDINEKDKHNHLHGFL--------YHEKWNV----VTTKQT-DEGVIVETE    125
d1j0ma3       79 -------------------------TVASGTPIASGTG--TSSWTGGVSLAGQYGASGMD    111

Query        126 IDLSELPHVQKQF--PHHAVVRMTYTIKENTLFKHATVMNKGKE-----AFPWGIGYH-T    177
d1j0ma3      112 LS-----------YGAYNLSARKSWFMFDDEIVALG--------SGISSTAGIPIETVVD    152

Query        178 TFIFPA---ESSLFSLTADQQWELDERLLPTGKLMDVPYKEAL---HEGMDLRH--KQLD    229
d1j0ma3      153 NRKL--NGAGDNAWT----------------------------ANGAALS----TGLGVA    178

Query        230 DVFLSSYQKRGGE---NQAVIYHQHA----HISIIYKADEQF---KHWVVYNADGK----    275
d1j0ma3      179 QTL----------TGVNWVHLAG---NTADGSDIGYYF----PGGATLQTKR----EART    217

Query        276 ------------------QGYLCPEPYTWVTNAVNLDLPSSLTGLQVLEPG-----EETT    312
d1j0ma3      218 GTWKQINNRPATPSTAVTRNYETMWID------------------------HGTNPSGAS    253

Query        313 AKSSITIELN--------------    322
d1j0ma3      254 YGYVLL----PNKTSAQVGAYAAD    273

hit structure alignment

TMalign alignment (TM-score: 0.53 Raw score:170.85)

Query          1 -ANFIEKITYLGTPAIKAGNEH-LEMIVVP------EW-----------G--SNVISLVD     39
d1j0ma3        1 PNLYKQYAA----MDRAVLQRPGFALGLALYSTRISSYESINSENGRGWYTGAGATYLYN     56

Query         40 KTTNVQLLREPETAESFHDTPTLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHL     99
d1j0ma3       57 ---QDLAQYSEDY--WPTVDAYR-IPGTTVAS----------------------------     82

Query        100 HGFLYHEKW-N-VVTTKQTD-EGVIVETEIDLSELPHVQKQFPHHAVVRMTYTIKENTLF    156
d1j0ma3       83 GTPIASGTGTSSWTGGVSLAGQYGASGMDLSY--G-AY---N---LSARKSWFMFDDEIV    133

Query        157 KHATVMNKGKE-AFPWGIGYHTTFIFPAE-SSLFSLTADQQWELDERLLPTGKLMDVPYK    214
d1j0ma3      134 ALGSGIS-S-TA-GIPIETVVDNRKLNGAGDNAWTAN-----------------------    167

Query        215 EALHEGMDLRHKQLDDVFLSSYQKRGGENQAVIYH-QHAHISIIYKADEQFKHWVVYNAD    273
d1j0ma3      168 --GAALSTG--LGV-AQTLT-G-----VNWVHLAGNTADGSDIGYYFPGGATLQTKREAR    216

Query        274 G----------------KQGYLCPEPYTWVTNAVNLDLPSSLTGLQVLEPGEETTAKSSI    317
d1j0ma3      217 TGTWKQINNRPATPSTAVTRNYETMWIDH---GT-----------NPS----GASYGYVL    258

Query        318 TIELN----------    322
d1j0ma3      259 LPNKTSAQVGAYAAD    273

hit structure alignment

HHsearch alignment (Probability: 0.01 E-value:0.82)

DALI match                    
Query         79 FSFRGRTYHFDIN     91
d1j0ma3      126 FMFDDEIVALGSG    138

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14: d1o7d.2 Lysosomal alpha-mannosidase (svm: 1.906)

SCOP Superfamily: Galactose mutarotase-like | SCOP Fold: Supersandwich | SCOP Class: All beta proteins

Consensus: 0.48 Contact: 2209
Modified z-scores:
dali:1.00 daliz:1.00 gdtts:1.00 tmscore:1.00 rmsd:0.42 AHM:0.45 LBcontacta:1.00 LBcontactb:1.00 LHM:0.11
id:1.00 blosum:0.30 compass:0.07 pearson:1.00
Scaled scores:
dali:0.76 daliz:0.48 gdtts:0.55 tmscore:0.71 rmsd:0.80 AHM:0.75 LBcontacta:0.60 LBcontactb:0.68 LHM:0.51
id:0.05 blosum:0.11 compass:0.15 pearson:0.16

hit structure alignment

DALI alignment (Z-score: 12.4 Raw score:1338.40)

Query          1 ------------------------------------------------------------      1
d1o7d.2        1 edfafcrklnisicpltqtaerfqvivynplgrkvdwmvrlpvskhvylvkdpggkivps     60

Query          1 ---------------------anfiekitylgtPAIKAGNEHLEMIVVPEWgSNVISLVD     39
d1o7d.2       61 dvvtipssdsqellfsalvpavgfsiysvsqmpRDLVIQNEYLRARFDPNT-GLLMELEN    119

Query         40 KttnVQLLRepetaesfhdtptlyGIPILFppNRISD------gTFSFrgrtyhfdinek     93
d1o7d.2      120 L---LLLPV---------------RQAFYW--YNASTgnnlssqASGA---------yif    150

Query         94 dkHNHLHGFLYHeKWNVvTTKQTDEGVIVETEIDLselphvqkqfphhaVVRMTYTIK--    151
d1o7d.2      151 rpNQNKPLFVSH-WAQT-HLVKASLVQEVHQNFSA--------------WCSQVVRLYpr    194

Query        152 ENTLFKHATVMN-kgkeafpWGIGYHTTFIFPAEssLFSLTADqqwelderllptgklmd    210
d1o7d.2      195 QRHLELEWTVGPipvgdgwgKEVISRFDTALATR-gLFYTDSN-----------------    236

Query        211 vpykealHEGMDLRHK----------qldDVFLSsyqkrggENQAVIYHQhaHISIIYKA    260
d1o7d.2      237 ----greILERRRNYRptwklnqtepvagNYYPV-------NSRIYITDG--NMQLTVLT    283

Query        261 DEqfKHWVVYNadgkqgYLCPEPYTWvtnAVNLDlpssltglqvlEPGE-ETTAKSSITI    319
d1o7d.2      284 DR-sQGGSSLR------DGSLELMVH--rRLLKDdargvgeplnkEGSGlWVRGRHLVLL    334

Query        320 ELN---------------------------------------------------------    322
d1o7d.2      335 DKKetaaarhrlqaemevlapqvvlaqgprtqfsglrrelppsvrlltlarwgpetlllr    394

Query        323 ------------------------------------------------------------    323
d1o7d.2      395 lehqfavgedsgrnlsspvtldltnlfsaftitnlrettlaanqllayasrlqwttdati    454

Query        323 ----------------    323
d1o7d.2      455 tlqpmeirtflasvqw    470

hit structure alignment

FAST alignment (Normalized score: 5.26 Raw score:2048.00)

Query          1 ANFIEKITYLGT------------------------------------------------     12
d1o7d.2        1 ------------EDFAFCRKLNISICPLTQTAERFQVIVYNPLGRKVDWMVRLPVSKHVY     48

Query         13 ---------------------------------------------PAIKAGNEHLEMIVV     27
d1o7d.2       49 LVKDPGGKIVPSDVVTIPSSDSQELLFSALVPAVGFSIYSVSQMPRDLVIQNEYLRARFD    108

Query         28 PEWGSNVISLVDKTTNVQLLREPETAESFHDTPTLY-GIPILFPPNRISDGTFSFRGRTY     86
d1o7d.2      109 P-NTGLLMELE-NLLLLP------------------VRQAFY--WYNA------------    134

Query         87 HFDINEKDKHNHLHGFLYH---------------------------EKWNVVTTKQTDEG    119
d1o7d.2      135 -------------------STGNNLSSQASGAYIFRPNQNKPLFVSHWAQT-HLVKASLV    174

Query        120 VIVETEIDLSELPHVQKQFPHHA--VVRMTYTIK--ENTLFKHATVMNKGKE-------A    168
d1o7d.2      175 QEVHQNF----------------SAWCSQVVRLYPRQRHLELEWTV------GPIPVGDG    212

Query        169 FPWGIGYHTTFIFPAES--SLFSLTADQQWELDERLLPTGKLMDVPYKEAL------HEG    220
d1o7d.2      213 WGKEVISRFDTALA---TRGLFYT---------------------------DSNGREILE    242

Query        221 MDLRHKQLD-----------------DVFLSSYQKRGGE-NQAVIYHQHAHISIIYKADE    262
d1o7d.2      243 RR-------RNYRPTWKLNQTEPVAGNYYPV--------NSRIYITDG--NMQLTVLTD-    284

Query        263 QF--KHWVVYNADGKQGY---LCPEPYTWVTNA-----VNLDLPSSLTGLQVLEPG----    308
d1o7d.2      285 --RSQGGSS---------LRDGSLELMV-----HRRLLKDDA--------------RGVG    314

Query        309 ---------EETTAKSSITIELN-------------------------------------    322
d1o7d.2      315 EPLNKEGSGLWVRGRHLVLLD--KKETAAARHRLQAEMEVLAPQVVLAQGPRTQFSGLRR    372

Query        323 ------------------------------------------------------------    323
d1o7d.2      373 ELPPSVRLLTLARWGPETLLLRLEHQFAVGEDSGRNLSSPVTLDLTNLFSAFTITNLRET    432

Query        323 --------------------------------------    323
d1o7d.2      433 TLAANQLLAYASRLQWTTDATITLQPMEIRTFLASVQW    470

hit structure alignment

TMalign alignment (TM-score: 0.51 Raw score:165.80)

Query          1 ------------------------------------------------------------      1
d1o7d.2        1 EDFAFCRKLNISICPLTQTAERFQVIVYNPLGRKVDWMVRLPVSKHVYLVKDPGGKIVPS     60

Query          1 ---------------------------------ANFIEKITYLGTPAIKAGNEHLEMIVV     27
d1o7d.2       61 DVVTIPSSDSQELLFSALVPAVGFSIYSVSQMP------RD------LVIQNEYLRARFD    108

Query         28 PEWGSNVISLVDKTTNVQLLREPETAESFHDTPTLYGIPILFPPNRISDGT-----FSF-     81
d1o7d.2      109 PNT-GLLMELENL--LLLPV----------------RQAFY-W-YNASTGNNLSSQASGA    147

Query         82 ----RGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDEGVIVETEIDLSELPHVQKQ    137
d1o7d.2      148 YIFR-------------PNQNKPLFVSH-WAQTHLVKASL-VQEVHQNFS----------    182

Query        138 FPHHAVVRMTYTIK--ENTLFKHATVMNKG-KE-AF-PWGIGYHTTFIFPAESSLFSLTA    192
d1o7d.2      183 ----AWCSQVVRLYPRQRHLELEWTVGPIPV-GD-GWGKEVISRFDTALATR-GLFYTDS    235

Query        193 D-QQWELDERLLPTGKLMDVPYKEALHEGMDLRHK------Q--LD-DVFLSSYQKRGGE    242
d1o7d.2      236 NG---------------------R-EILERRRNYRPTWKLNQTEPVAGNYYPVN------    267

Query        243 NQAVIYHQHAHISIIYKADEQFKHWVVYNADGKQGYLCPEPYTWVTNAVNLDLPSS-LTG    301
d1o7d.2      268 SRIYITDGN--MQLTVLTDR-SQGGSSLR------DGSLELMVHR-RLLKDDARGVG-EP    316

Query        302 LQVLEPGEETTAKSSITIEL--N-------------------------------------    322
d1o7d.2      317 LNKEGSGLWVRGRHLVLLDKKETAAARHRLQAEMEVLAPQVVLAQGPRTQFSGLRRELPP    376

Query        323 ------------------------------------------------------------    323
d1o7d.2      377 SVRLLTLARWGPETLLLRLEHQFAVGEDSGRNLSSPVTLDLTNLFSAFTITNLRETTLAA    436

Query        323 ----------------------------------    323
d1o7d.2      437 NQLLAYASRLQWTTDATITLQPMEIRTFLASVQW    470

hit structure alignment

HHsearch alignment (Probability: 0.14 E-value:0.01)

DALI match         ***************** .*********.  .....                      
Query         11 GTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLR--EPETAESFHDTPTLYGIPIL     68
d1o7d.2       92 MPRDLVIQNEYLRARFDPN-TGLLMELENLLLLPVRQAFYWYNASTGNNLSSQASGAYIF    150

DALI match           
Query         69 FPPN     72
d1o7d.2      151 RPNQ    154

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15: d1hn0a4 Chondroitin ABC lyase I (svm: 1.566)

SCOP Superfamily: Galactose mutarotase-like | SCOP Fold: Supersandwich | SCOP Class: All beta proteins

Consensus: 0.46 Contact: 2162
Modified z-scores:
dali:1.00 daliz:1.00 gdtts:1.00 tmscore:1.00 rmsd:0.44 AHM:0.50 LBcontacta:1.00 LBcontactb:1.00 LHM:0.10
id:0.94 blosum:0.01 compass:0.03 pearson:0.99
Scaled scores:
dali:0.74 daliz:0.42 gdtts:0.47 tmscore:0.66 rmsd:0.79 AHM:0.72 LBcontacta:0.57 LBcontactb:0.67 LHM:0.55
id:-0.01 blosum:0.05 compass:0.06 pearson:0.10

hit structure alignment

DALI alignment (Z-score: 10.9 Raw score:1237.40)

Query          1 -ANFIEKITylgtPAIKAGNEH-LEMIVVPE--------------------WGSNViSLV     38
d1hn0a4        1 pQGFYAFNG----GAFGIHRWQdKMVTLKAYntnvwsseiynkdnrygryqSHGVA-QIV     55

Query         39 DkTTNVqllrepetaesfhdTPTLYGIPILFPpnrisdgtfsfrgrtyhFDINekdkhnh     98
d1hn0a4       56 S-NGSQ----lsqgyqqegwDWNRMEGATTIH-------------lplkDLDS-----pk     92

Query         99 lhgflyhekwnVVTTKQTD-EGVIVETEIDLsELPHvqKQFPHHAVVRMTYTIKENTLFK    157
d1hn0a4       93 phtlmqrgergFSGTSSLEgQYGMMAFNLIY-PANL--ERFDPNFTAKKSVLAADNHLIF    149

Query        158 HATVmnkgkeAFPW-GIGYHTTFIFPAES-SLFSLTadqqwelderllptgklmdvpyke    215
d1hn0a4      150 IGSN---insSDKNkNVETTLFQHAITPTlNTLWIN------------------------    182

Query        216 alHEGMDLrhKQLDDVFLssyqkrggENQAVIYhqhahISIIYKADEqFKHWVVYNAD--    273
d1hn0a4      183 --GQKIEN--MPYQTTLQ-------qGDWLIDS-----NGNGYLITQ-AEKVNVSRQHqv    225

Query        274 ---------gKQGYLCPEPYTWvtnavnldlpssltGLQVlepgeETTAKSSITIE----    320
d1hn0a4      226 saenknrqptEGNFSSAWIDHS--------------TRPK-----DASYEYMVFLDatpe    266

Query        321 -------------ln    322
d1hn0a4      267 kmgemaqkfrenngl    281

hit structure alignment

FAST alignment (Normalized score: 5.73 Raw score:1723.00)

Query          1 --ANFIEKITYL-GTPAIKAGNEHLEMIVVPE----------------------WGSNVI     35
d1hn0a4        1 PQGFYAF-----NGGAFGIHRWQDKMVTLK--AYNTNVWSSEIYNKDNRYGRYQSHGVA-     52

Query         36 SLVDKTTNVQLLREPETAESFHD------------TPTLYGIPILFPPNRISDGTFSFRG     83
d1hn0a4       53 QIVSNG-----------------SQLSQGYQQEGWDWNRMEGATT---------------     80

Query         84 RTYHFDINEKDKHNHLHGFLYHEKWNV------------------------VTTKQT-DE    118
d1hn0a4       81 ---------------------------IHLPLKDLDSPKPHTLMQRGERGFSGTSSLEGQ    113

Query        119 GVIVETEID-LSELPHVQKQFP--HHAVVRMTYTIKENTLFKHATVMNKGKEAFP-----    170
d1hn0a4      114 YGMMAFNLIYPANLER------FDPNFTAKKSVLAADNHLIFIG-----------SNINS    156

Query        171 ----WGIGYH-TTFIFPAES----SLFSLTADQQWELDERLLPTGKLMDVPYKEALHE--    219
d1hn0a4      157 SDKNKNVETTLFQHAI----TPTLNTLW------------------------------IN    182

Query        220 GMDLRH--KQLDDVFLSSYQKRGGE--NQAVIYHQHAH-ISIIYKADEQFKHWVVYNADG    274
d1hn0a4      183 GQKI--ENMPYQTTLQ---------QGDWLID------SNGNGYLIT-QAEKVNVSR---    221

Query        275 K---------------QGYLCPEPYTWVTNAVNLDLPSSLTGLQVLEPG----EETTAKS    315
d1hn0a4      222 -QHQVSAENKNRQPTEGNFSSAWIDH-----------------------STRPKDASYEY    257

Query        316 SITIELN---------------------    322
d1hn0a4      258 MVF----LDATPEKMGEMAQKFRENNGL    281

hit structure alignment

TMalign alignment (TM-score: 0.52 Raw score:166.83)

Query          1 --ANFIEKITYLGTPAIKAGNEH-LEMI-VVP-----EW-----------G-SN-VISLV     38
d1hn0a4        1 PQGFYAFNG-----GAFGIHRWQDKMVTLKAYNTNVWSSEIYNKDNRYGRYQSHGVAQIV     55

Query         39 DKTTNV-Q-LLREPETAESFHDTPTLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKH     96
d1hn0a4       56 S---NGSQLSQGYQQ---EG-WDWNRMEGATTI-HL------------------PLK---     86

Query         97 NHL--------HGFLYHEKW-N-VVTTKQTD-EGVIVETEIDLSELPHVQKQFPHHAVVR    145
d1hn0a4       87 -DLDSPKPHTL-----MQRGERGFSGTSSLEGQYGMMAFNLIYPANLERF--DPN-FTAK    137

Query        146 MTYTIKENTLFKHATVMNKGKEAFPWG-IGYH-TTFIFPAESSLFSLTADQQWELDERLL    203
d1hn0a4      138 KSVLAADNHLIFIGSNIN-S--SDKNKNVETTLFQHAITPTLNTLWIN------------    182

Query        204 PTGKLMDVPYKEALHEGMDLRHKQLDDVFLSSYQKRGGENQAVIYHQHAHISIIYKADEQ    263
d1hn0a4      183 --------------GQKIEN--MPY-Q-TTLQQ-----GDWLIDSN-----GNGYLITQA    214

Query        264 FKHWVVYNADG----------KQGYLCPEPYTWVTNAVNLDLPSSLTGLQVLEPGEETTA    313
d1hn0a4      215 EKVNVSRQHQVSAENKNRQPTEGNFSSAWIDHS---------------TRPK----DASY    255

Query        314 KSSITIELN-----------------    322
d1hn0a4      256 EYMVFLDATPEKMGEMAQKFRENNGL    281

hit structure alignment

HHsearch alignment (Probability: 0.02 E-value:1.00)

DALI match           ....                 .........**********   ...  ********
Query         84 RTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDEGVIVETEIDLSELPHVQKQFPHHAV    143
d1hn0a4       79 TTIHLPLKDLDSPKPHTLMQRGERGFSGTSSLEGQYGMMAFNLI---YPANLERFDPNFT    135

DALI match       ************
Query        144 VRMTYTIKENTL    155
d1hn0a4      136 AKKSVLAADNHL    147

hit structures.

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16: d1rwha3 Chondroitinase AC (svm: 1.589)

SCOP Superfamily: Galactose mutarotase-like | SCOP Fold: Supersandwich | SCOP Class: All beta proteins

Consensus: 0.55 Contact: 2170
Modified z-scores:
dali:1.00 daliz:1.00 gdtts:1.00 tmscore:1.00 rmsd:0.43 AHM:0.48 LBcontacta:1.00 LBcontactb:1.00 LHM:0.10
id:0.90 blosum:0.00 compass:0.02 pearson:0.99
Scaled scores:
dali:0.75 daliz:0.44 gdtts:0.49 tmscore:0.67 rmsd:0.79 AHM:0.71 LBcontacta:0.58 LBcontactb:0.66 LHM:0.52
id:-0.01 blosum:0.01 compass:0.08 pearson:0.09

hit structure alignment

DALI alignment (Z-score: 10.9 Raw score:1245.20)

Query          1 -ANFIEKitylgtPAIKAGNEH-LEMIVVPE--------------------WGSNViSLV     38
d1rwha3        1 aTGHKLF----paMDRTMHRGPgWALSLALSsnriawyecgngennrgyhtGSGMT-YFY     55

Query         39 DktTNVQllrepetaesfhdTPTLYGIPILFPpnrisdgtfsfrgrtyhFDINekdkhnh     98
d1rwha3       56 T--SDLG---qyddafwataNYNRLPGITVDT---------------tpLPDK-----ve     90

Query         99 lhgflyhekwNVVTTKQTDEGVIVETEIDLselphvqkqFPHHAVVRMTYTIKENTLFKH    158
d1rwha3       91 gqwgaavpadEWSGATALGEVAAVGQHLVG--------pGRTGLTARKSWFVSGDVTVCL    142

Query        159 AT-VMNKgkeaFPWGIGYHTTFIFPAESSLFSLTadqqwelderllptgklmdvpykEAL    217
d1rwha3      143 GAdISTA---sGAKVETIVDHRNLHQGSNTLTTA-----------------------AGT    176

Query        218 HegmdlrhkQLDDVFLSSYqkrggENQAVIYHqhahiSIIYKA-DEQFkHWVVYNAD---    273
d1rwha3      177 I------agTAGTVEVLGD-----GRWVHLEG-----FGGYAMlDDSP-LHVLRETRsgs    219

Query        274 ------------gKQGYLCpEPYTwvtnavnldlpssltgLQVLepgEETTAKSSITIEL    321
d1rwha3      220 wsgvningsatvqQRNFAT-LYVN---------------hGVGP---VAGSYAYMVAPGA    260

Query        322 N-----------    322
d1rwha3      261 Svdltrkllegn    272

hit structure alignment

FAST alignment (Normalized score: 5.86 Raw score:1734.00)

Query          1 ANFIEKITYLG---TPAIKAGNEHLEMIVVPE----------------------WGSNVI     35
d1rwha3        1 ATGHKL-----FPAMDRTMHRGPGWALSLA--LSSNRIAWYECGNGENNRGYHTGSGMT-     52

Query         36 SLV--DKTTNVQLLREPETAE-----SFHDTPT-----LYGIPILFPPNRISDGTFSFRG     83
d1rwha3       53 ---YFYTSDL-----------GQYDDAFWA---TANYNRLPGITV---------------     80

Query         84 RTYHFDINEKDKHNHLHGFLYHEKWNV----------------------VTTKQTDEGVI    121
d1rwha3       81 ---------------------------DTTPLPDKVEGQWGAAVPADEWSGATALGEVAA    113

Query        122 VETEIDLSELPHVQKQ--FPHHAVVRMTYTIKENTLFKHATVMNKGKE-----AFPWGIG    174
d1rwha3      114 VGQHLV----------GPGRTGLTARKSWFVSGDVTVCLG--------ADISTASGAKVE    155

Query        175 YH-TTFIFPA--ESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRH------    225
d1rwha3      156 TIVDHRNL--HQGSNTLTT-----------------------------------AAGTIA    178

Query        226 --KQLDDVFLSSYQKRGG---ENQAVIYHQHAHI--SIIYKADEQF---KHWVVYNADGK    275
d1rwha3      179 GTAGTVEV----------LGDGRWVHL-------EGFGGYAM----LDDSPLHVLR----    213

Query        276 --------------------QGYLCPEPYTWVTNAVNLDLPSSLTGLQVLEPG-----EE    310
d1rwha3      214 ETRSGSWSGVNINGSATVQQRNFATLYVN------------------------HGVGPVA    249

Query        311 TTAKSSITIELN---------------    322
d1rwha3      250 GSYAYMVA----PGASVDLTRKLLEGN    272

hit structure alignment

TMalign alignment (TM-score: 0.52 Raw score:165.97)

Query          1 -ANFIEKITYLGTPAIKAGNEH-LEMIVVP------E-------------WGSNVISLVD     39
d1rwha3        1 ATGHKLFPA----MDRTMHRGPGWALSLALSSNRIAWYECGNGENNRGYHTGSGMTYFYT     56

Query         40 KTTNVQLLREPETAESFHDTPTLYGIPILFPPNRISDGTFSFRGRTYHFDIN-------E     92
d1rwha3       57 ---SDLGQYDDAF--WATANYNRLPGITVDT-----------------TPLPDKVEGQW-     93

Query         93 KDKHNHLHGFLYH-EKW-N-VVTTKQTDEGVIVETEIDLSELPHVQKQFPHHAVVRMTYT    149
d1rwha3       94 ------------GAAVPADEWSGATALGEVAAVGQHLVG--PGRTG------LTARKSWF    133

Query        150 IKENTLFKHATVMNKGKE-AFPWGIGYHTTFIFPAESSLFSLTADQQWELDERLLPTGKL    208
d1rwha3      134 VSGDVTVCLGADIS-T-AS-GAKVETIVDHRNLHQGSNTLTTAA----------------    174

Query        209 MDVPYKEALHEGMDLRHKQLDDVFLSSYQKRGGENQAVIYHQHAHISIIYKADEQFKHWV    268
d1rwha3      175 ------G-TI--A-G--T-AGTVEVLGD-----GRWVHLEG-----FGGYAMLDDSPLHV    211

Query        269 VYNADG--------------KQGYLCPEPYTWVTNAVNLDLPSSLTGLQVLEPGEETTAK    314
d1rwha3      212 LRETRSGSWSGVNINGSATVQQRNFATLYVNH---GV-----------GPV----AGSYA    253

Query        315 SSITIELN-----------    322
d1rwha3      254 YMVAPGASVDLTRKLLEGN    272

hit structure alignment

HHsearch alignment (Probability: 0.01 E-value:0.81)

DALI match                    
Query         79 FSFRGRTYHFDIN     91
d1rwha3      133 FVSGDVTVCLGAD    145

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17: d1n7oa3 Hyaluronate lyase (svm: 1.590)

SCOP Superfamily: Galactose mutarotase-like | SCOP Fold: Supersandwich | SCOP Class: All beta proteins

Consensus: 0.41 Contact: 2104
Modified z-scores:
dali:1.00 daliz:1.00 gdtts:1.00 tmscore:1.00 rmsd:0.48 AHM:0.55 LBcontacta:1.00 LBcontactb:1.00 LHM:0.10
id:0.98 blosum:0.03 compass:0.03 pearson:1.00
Scaled scores:
dali:0.74 daliz:0.42 gdtts:0.46 tmscore:0.65 rmsd:0.77 AHM:0.69 LBcontacta:0.60 LBcontactb:0.70 LHM:0.53
id:0.01 blosum:0.06 compass:0.10 pearson:0.13

hit structure alignment

DALI alignment (Z-score: 11.0 Raw score:1245.00)

Query          1 ANFIEKItylgTPAIKAGNE--HLEMIVVPE--------------------WGSNViSLV     38
d1n7oa3        1 TSYLSAF--nkMDKTAMYNAekGFGFGLSLFssrtlnyehmnkenkrgwytSDGMF-YLY     57

Query         39 DkTTNVQ-llrEPETaesfhdTPTLYgIPILFPpnrisdgtfsfrgrtyhFDINEkdkhn     97
d1n7oa3       58 N-GDLSHysdgYWPT-----vNPYKM-PGTTET---------------daKRADS-----     90

Query         98 hlhgflyhekwnVVTTKQTD-EGVIVETEIDLSELphvqkqfphHAVVRMTYTIKENTLF    156
d1n7oa3       91 ---dtgkvlpsaFVGTSKLDdANATATMDFTNWNQ---------TLTAHKSWFMLKDKIA    138

Query        157 KHAT-VMNKgkeaFPWGIGYHTTFIFPAE-SSLFSLTadqqwelderllptgklmdvpyk    214
d1n7oa3      139 FLGSnIQNT---sTDTAATTIDQRKLESSnPYKVYVN-----------------------    172

Query        215 ealHEGMdlrhKQLDDVFLSsyqkrggENQAVIYHqHAHI-SIIYKADEqFKHWVVYNAD    273
d1n7oa3      173 ---DKEA--slTEQEKDYPE-------TQSVFLES-SDSKkNIGYFFFK-KSSISMSKAL    218

Query        274 ----------------gKQGYLCPEPYTwvtnavnldlpssltglqvlepgEETTAKSSI    317
d1n7oa3      219 qkgawkdinegqsdkevENEFLTISQAH---------------------kqNGDSYGYML    257

Query        318 TIELN------------    322
d1n7oa3      258 IPNVDratfnqmikele    274

hit structure alignment

FAST alignment (Normalized score: 5.13 Raw score:1525.00)

Query          1 ANFIEKITYLG---TPAIKAGNE---HLEMIVVPE----------------------WGS     32
d1n7oa3        1 TSYLSA-----FNKMDKTAMYN-AEKGFGFGLS--LFSSRTLNYEHMNKENKRGWYTSDG     52

Query         33 NVISLVD----KTTNVQLLREPETAE-----SFHDTPT-----LYGIPILFPPNRISDGT     78
d1n7oa3       53 M------FYLYNGDL-----------SHYSDGYWP---TVNPYKMPGT------------     80

Query         79 FSFRGRTYHFDINEKDKHNHLHGFLYHEKWNV--------------------VTTKQTDE    118
d1n7oa3       81 --------------------------------TETDAKRADSDTGKVLPSAFVGTSK---    105

Query        119 ----GVIVETEIDLSELPHVQKQ-FPHHAVVRMTYTIKENTLFKHA-TVMNKGKEAFPWG    172
d1n7oa3      106 LDDANATATMDFT----------NWNQTLTAHKSWFMLKDKIAFLGSNIQNTS--TDTAA    153

Query        173 IGYHTTFIFPAE-SSLFSLTADQQWELDERLLPTGKLMDVPYKEAL--HEGMDLRHKQ-L    228
d1n7oa3      154 TT-IDQRKLESSNPYKVY----------------------------VNDKEAS-----LT    179

Query        229 DDVFLSSYQKRGGE---NQAVIYHQHAH---ISIIYKADEQF-----KHWVVYNADGKQG    277
d1n7oa3      180 EQEKDY--------PETQSVFLESS---DSKKNIGYFF----FKKSSISMSKAL------    218

Query        278 ------------------YLCPEPYTWVTNAVNLDLPSSLTGLQVLEPG-----EETTAK    314
d1n7oa3      219 QKGAWKDINEGQSDKEVENEFLTIS------------------------QAHKQNGDSYG    254

Query        315 SSITIELN----------------    322
d1n7oa3      255 YMLI----PNVDRATFNQMIKELE    274

hit structure alignment

TMalign alignment (TM-score: 0.52 Raw score:167.65)

Query          1 -ANFIEKITYLGTPAIKAGNE-H-LEMIVVP------E-------------WGSNVISLV     38
d1n7oa3        1 TSYLSAFNK---MDKTAMYNAEKGFGFGLSLFSSRTLNYEHMNKENKRGWYTSDGMFYLY     57

Query         39 DKTTNVQLLREPETAESFHDTPTLYGIPILFPPNRISDGTFSFRGRTYHFDINE----KD     94
d1n7oa3       58 N----GDLSHYSDGY-WPTVNPYK-MPGTTET-D----------------AKRADSDT--     92

Query         95 KHNHLHGFLYHEKW--NVVTTKQTD-EGVIVETEIDLSELPHVQKQFPHHAVVRMTYTIK    151
d1n7oa3       93 ----------GKVLPSAFVGTSKLDDANATATMDFTN--W--NQ--T---LTAHKSWFML    133

Query        152 ENTLFKHATVMNKGKEAFPWGIGYHTTFIFPAESSLFSLTADQQWELDERLLPTGKLMDV    211
d1n7oa3      134 KDKIAFLGSNIQ-N-TSTDTAATTIDQRKLESSNPYKVYVN-------------------    172

Query        212 PYKEALHEGMDLRHKQLDDVFLSSYQKRGGENQAVIYHQHAHISIIYKADEQFKHWVVYN    271
d1n7oa3      173 -----DKEAS-L----TEQEKDYPE-----TQSVFLESSDSKKNIGYFFFKKSSISMSKA    217

Query        272 ADG--------------KQGYLCPEPYTWVTNAVNLDLPSSLTGLQVLEPGEETTAKSSI    317
d1n7oa3      218 LQKGAWKDINEGQSDKEVENEFLTISQAH---------------KQNG-----DSYGYML    257

Query        318 TIELN------------    322
d1n7oa3      258 IPNVDRATFNQMIKELE    274

hit structure alignment

HHsearch alignment (Probability: 0.03 E-value:1.00)

DALI match                                                                   
Query         77 GTFSFRGRTYHFDINEKDKHNHLHGFLY--HEKWNVVTTKQTDEGVIVETEIDLSELPHV    134
d1n7oa3       46 GWYTSDGMFY----------LYNGDLSHYSDGYWPTVNPYKMPGTTETDAKR-----ADS     90

DALI match                                                         
Query        135 QKQFPHHAVVRMTYTIKENTLFKHATVMNKGKEAFPWGIGYHTTFIFPAE    184
d1n7oa3       91 DTGKVLPSAFVGTSKLDDANATATMDFTNWNQT----LTAHKSWFMLKDK    136

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18: d1cb8a3 Chondroitinase AC (svm: 1.476)

SCOP Superfamily: Galactose mutarotase-like | SCOP Fold: Supersandwich | SCOP Class: All beta proteins

Consensus: 0.50 Contact: 2251
Modified z-scores:
dali:1.00 daliz:1.00 gdtts:1.00 tmscore:1.00 rmsd:0.47 AHM:0.51 LBcontacta:1.00 LBcontactb:1.00 LHM:0.11
id:0.98 blosum:0.00 compass:0.02 pearson:0.99
Scaled scores:
dali:0.74 daliz:0.43 gdtts:0.49 tmscore:0.67 rmsd:0.77 AHM:0.70 LBcontacta:0.60 LBcontactb:0.68 LHM:0.51
id:0.01 blosum:0.03 compass:0.09 pearson:0.10

hit structure alignment

DALI alignment (Z-score: 11.3 Raw score:1233.60)

Query          1 --ANFIEKITylgtPAIKAGNE-HLEMIVVPE--------------------WGSNViSL     37
d1cb8a3        1 iePYHHQFWN----GDYVQHLRpAYSFNVRMVskrtrrsesgnkenllgrylSDGAT-NI     55

Query         38 VDkttNVQLLrepetaesfhdTPTLYGIPILFPpnrisdgtfsfrgrtyhFDINekdkhn     97
d1cb8a3       56 QL---RGPEY----ynimpvwEWDKIPGITSRD-------------yltdRPLT------     89

Query         98 hlhgflyhEKWNVVTTKQTDEGVIVETEIDLselphvqkqfphHAVVRMTYTIKENTLFK    157
d1cb8a3       90 --klwgeqGSNDFAGGVSDGVYGASAYALDY-----------dSLQAKKAWFFFDKEIVC    136

Query        158 HATVMNkgkeAFPWGIGYH-TTFIFPaesSLFSLTadqqwelderllptgklmdvpykea    216
d1cb8a3      137 LGAGIN---sNAPENITTTlNQSWLN---GPVIST-------------------------    165

Query        217 lhEGMDLrhkQLDDVFLSSYqkrggENQAVIYhqhahiSIIYKADEqFKHWVVYNAdGK-    275
d1cb8a3      166 -aGKTGR---GKITTFKAQG-----QFWLLHD------AIGYYFPE-GANLSLSTQ-SQk    208

Query        276 ----------------QGYLCPEPYTWvtnavnldlpssltglqvlepgEETTAKSSITI    319
d1cb8a3      209 gnwfhinnshskdevsGDVFKLWINHG-------------------arpENAQYAYIVLP    249

Query        320 ELN------------    322
d1cb8a3      250 GINkpeeikkyngta    264

hit structure alignment

FAST alignment (Normalized score: 5.78 Raw score:1684.00)

Query          1 ---ANFIEKITYLGT---PAIKAGNEHLEMIVVPE----------------------WGS     32
d1cb8a3        1 IEPYHHQF-------WNGDYVQHLRPAYSFNVR--MVSKRTRRSESGNKENLLGRYLSDG     51

Query         33 NVISLVD--KTTNVQLLREPETAE----SFHDTP---TLYGIPILFPPNRISDGTFSFRG     83
d1cb8a3       52 AT-----NIQLRG-----------PEYYNIMPV-WEWDKIPGITS---------------     79

Query         84 RTYHFDINEKDKHNHLHGFLYHEKWNV---------------------VTTKQTDEGVIV    122
d1cb8a3       80 ---------------------------RDYLTDRPLTKLWGEQGSNDFAGGVSDGVYGAS    112

Query        123 ETEIDLSELPHVQKQFP--HHAVVRMTYTIKENTLFKHATVMNKGKE-----AFPWGIGY    175
d1cb8a3      113 AYAL-------------DYDSLQAKKAWFFFDKEIVCLG--------AGINSNAPENITT    151

Query        176 H-TTFIFPAES-SLFSLTADQQWELDERLLPTGKLMDVPYKEALHE-GMDLRH-KQLDDV    231
d1cb8a3      152 TLNQSWL----NGPVIS-----------------------------TAGKT--GRGKITT    176

Query        232 FLSSYQKRGG--ENQAVIYHQHAHI--SIIYKADEQF--KHWVVYNADGK----------    275
d1cb8a3      177 FKA-------QGQFWLL--------HDAIGYYFP---EGANLSLST----QSQKGNWFHI    214

Query        276 ----------QGYLCPEPYTWVTNAVNLDLPSSLTGLQVLEPG-----EETTAKSSITIE    320
d1cb8a3      215 NNSHSKDEVSGDVFKLWIN------------------------HGARPENAQYAYIVL--    248

Query        321 LN----------------    322
d1cb8a3      249 --PGINKPEEIKKYNGTA    264

hit structure alignment

TMalign alignment (TM-score: 0.50 Raw score:161.41)

Query          1 --ANFIEKITYLGTPAIKAGNEH-LEMIVVP------E-------------WGSNVISLV     38
d1cb8a3        1 IEPYHHQFWN----GDYVQHLRPAYSFNVRMVSKRTRRSESGNKENLLGRYLSDGATNIQ     56

Query         39 DKTTNVQLLREPETAESFHDTPTLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNH     98
d1cb8a3       57 L----RGPEYYNIM--PV-WEWDKIPGITSR--D------------------YLT-----     84

Query         99 LH------GFLYHE-KWN-VVTTKQTDEGVIVETEIDLSELPHVQKQFPHHAVVRMTYTI    150
d1cb8a3       85 DRPLTKLW----GEQGSNDFAGGVSDGVYGASAYALDY--D--S-------LQAKKAWFF    129

Query        151 KENTLFKHATVMNKGKE-AFPWGIGYHTTFIFPAESSLFSLTADQQWELDERLLPTGKLM    209
d1cb8a3      130 FDKEIVCLGAGIN-S-NA-PENITTTLNQSWLN---GPVIST------------------    165

Query        210 DVPYKEALHEGMDLRHKQLDDVFLSSYQKRGGENQAVIYHQHAHISIIYKADEQFKHWVV    269
d1cb8a3      166 --------AGKTGR---GK-ITTFKAQ----GQFWLLH-D-----AIGYYFPEGANLSLS    203

Query        270 YNADG---------------KQGYLCPEPYTWVTNAVNLDLPSSLTGLQVLEPGEETTAK    314
d1cb8a3      204 TQSQKGNWFHINNSHSKDEVSGDVFKLWINHG----A----------RPEN-----AQYA    244

Query        315 SSITI-ELN-----------    322
d1cb8a3      245 YIVLPGINKPEEIKKYNGTA    264

hit structure alignment

HHsearch alignment (Probability: 0.01 E-value:0.55)

DALI match                     
Query         11 GTPAIKAGNEHLEM     24
d1cb8a3      110 GASAYALDYDSLQA    123

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19: d1siha1 Copper amine oxidase, domain 3 (svm: 1.541)

SCOP Superfamily: Amine oxidase catalytic domain | SCOP Fold: Supersandwich | SCOP Class: All beta proteins

Consensus: 0.43 Contact: 2415
Modified z-scores:
dali:1.00 daliz:1.00 gdtts:1.00 tmscore:1.00 rmsd:0.34 AHM:0.36 LBcontacta:1.00 LBcontactb:1.00 LHM:0.15
id:0.99 blosum:0.03 compass:0.14 pearson:1.00
Scaled scores:
dali:0.77 daliz:0.49 gdtts:0.56 tmscore:0.77 rmsd:0.85 AHM:0.80 LBcontacta:0.62 LBcontactb:0.70 LHM:0.48
id:0.03 blosum:0.07 compass:0.15 pearson:0.16

hit structure alignment

DALI alignment (Z-score: 12.8 Raw score:1537.60)

Query          1 -----------------ANFIEKItylgtpaIKAGNEHLEMIVVPEW--GSNVISLVDKT     41
d1siha1        1 plrttqkpisitqpegpSFTVTGG-------NHIEWEKWSLDVGFDVreGVVLHNIAFRD     53

Query         42 --TNVQLLRepetaesfhdtptlyGIPILFPpnrisdgtfsFRGR---TYHFdinekdkh     96
d1siha1       54 gdRLRPIIN---------------RASIAEM------vvpyGDPSpirSWQN--------     84

Query         97 nhlhGFLY---hEKWN--------------------------------VVTTKQTD----    117
d1siha1       85 ---yFDTGeylvGQYAnslelgcdclgditylspvisdafgnpreirnGICMHEEDwgil    141

Query        118 ----------------EGVIVETEIDLSelphvqkqfphHAVVRMTYTIKE-NTLFKHAT    160
d1siha1      142 akhsdlwsginytrrnRRMVISFFTTIG-----------NXDYGFYWYLYLdGTIEFEAK    190

Query        161 VMNKGKE---------------------AFPWGIGYHTTFIfpaeSSLFSLTADqqweld    199
d1siha1      191 ATGVVFTsafpeggsdnisqlapglgapFHQHIFSARLDMAidgfTNRVEEEDV------    244

Query        200 erllptgklmdvpykealHEGMdlrhKQLD-DVFLSSYqkRGGEnQAVIYHQHA------    252
d1siha1      245 vrqtmgpgnergnafsrkRTVL----TRESeAVREADA--RTGR-TWIISNPESknrlne    297

Query        253 HISIIYKADEQ------------------fKHWVVYN-----------------------    271
d1siha1      298 PVGYKLHAHNQptlladpgssiarraafatKDLWVTRyadderyptgdfvnqhsggaglp    357

Query        272 ----ADGK--qGYLCPEPYTWvtnavnldlpssltgLQVLE------PGEETTAKSSITI    319
d1siha1      358 syiaQDRDidgQDIVVWHTFG---------------LTHFPrvedwpIMPVDTVGFKLRP    402

Query        320 ELN------------    322
d1siha1      403 EGFfdrspvldvpan    417

hit structure alignment

FAST alignment (Normalized score: 6.16 Raw score:2259.00)

Query          1 -----------------ANFIEKITYLGTP--AIKAGNEHLEMIVVPEW-----GSNVIS     36
d1siha1        1 PLRTTQKPISITQPEGPSFTV---------TGGNHIEWEKWSLDVG---FDVREGVVLHN     48

Query         37 LVDK---TTNVQLLREPETAESFHDTPTLY--GIPILFPPNRISDGTFSFRGRTYHFDIN     91
d1siha1       49 IAF-RDGDRLRPI-----------------INRASI------------------------     66

Query         92 EKDKHNHLHG-------------------------FLYHEKWNV----------------    110
d1siha1       67 ----------AEMVVPYGDPSPIRSWQNYFDTGEYLVGQ-----YANSLELGCDCLGDIT    111

Query        111 -------------------VTTKQT--------------------DEGVIVETEIDLSEL    131
d1siha1      112 YLSPVISDAFGNPREIRNGICMHEEDWGILAKHSDLWSGINYTRRNRRMVISFFTT----    167

Query        132 PHVQKQFP-HHAVVRMTYTIK-ENTLFKHATVMNKG-----------------------K    166
d1siha1      168 --------IGNXDYGFYWYLYLDGTIEFEAKATG--VVFTSAFPEGGSDNISQLAPGLGA    217

Query        167 EAFPWGIGYHTTFIFPAE----SSLFSLTADQQWELDERLLPTGKLMDVPYKEALH----    218
d1siha1      218 PFHQHIFSARLDMA----IDGFTNRVEE----------------------------EDVV    245

Query        219 ----------------EGMDLRHKQLD----DVFLSSYQKR--GGENQAVIYHQHA----    252
d1siha1      246 RQTMGPGNERGNAFSRKRTVLT-----RESEAVREA-----DARTGRTWIISNPE-SKNR    294

Query        253 ---HISIIYKADEQFK----------------------HWVVYNADGKQ-----------    276
d1siha1      295 LNEPVGYKLHAH----NQPTLLADPGSSIARRAAFATKDLWV-------TRYADDERYPT    343

Query        277 -------------------------GYLCPEPYTWVTNAVNLDLPSSLT-GLQVLE----    306
d1siha1      344 GDFVNQHSGGAGLPSYIAQDRDIDGQDIVVWH-----------------TFGLTHFPRVE    386

Query        307 ---PGEETTAKSSITIELN---------------    322
d1siha1      387 DWPIMPVDTVGFKLRP---EGFFDRSPVLDVPAN    417

hit structure alignment

TMalign alignment (TM-score: 0.59 Raw score:190.59)

Query          1 ----------------ANFIEKITYLGTPAIKAGNEHLEMIVVPEW--GSNVISLVDKT-     41
d1siha1        1 PLRTTQKPISITQPEG-PSFTVTG----GNHIEWEK-WSLDVGFDVREGVVLHNIAFRDG     54

Query         42 -TNVQLLREPETAESFHDTPTLYGIPILFPPNRISDGTFSFR-G--R-TYHFDINEKDKH     96
d1siha1       55 DRLRPIIN---------------RASIAEMV--V----PYGDPSPIRSWQNYF-------     86

Query         97 NHLHGFLYHEKW--------------------------------NVVTTKQT--------    116
d1siha1       87 -DTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWGILAKHS    145

Query        117 ----------DEGVIVETEIDLSELPHVQKQFPHHAVVRMTYTIKENTLFKHATVMNKGK    166
d1siha1      146 DLWSGINYTRRNRRMVISFFTTI---------GNXDYGFYWYLYLDGTIEFEAKATGVVF    196

Query        167 E-------------------A--FPWGIGYHTTFIFPAESSLFSLTAD------------    193
d1siha1      197 TSAFPEGGSDNISQLAPGLGAPFHQHIFSARLDMAIDGFTNRVEEEDVVRQTMGPGNERG    256

Query        194 ----QQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVFLSSYQKRGGENQAVIYH    249
d1siha1      257 NAFS-----------------------RKRTVLT--RESEAVREADA--RTGR-TWIISN    288

Query        250 QHAH------ISIIYKADEQFK------------------HWVVYNA-------------    272
d1siha1      289 PESKNRLNEPVGYKLHAHNQPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVN    348

Query        273 -------------D-GKQ--GYLCPEPYTWVTNAVNLDLPSSLTGLQVL---EP--GEET    311
d1siha1      349 QHSGGAGLPSYIAQDRDIDGQDIVVWHTFG--------------LTHFPRVEDWPIMPVD    394

Query        312 TAKSSITI--ELN----------    322
d1siha1      395 TVGFKLRPEGFFDRSPVLDVPAN    417

hit structure alignment

HHsearch alignment (Probability: 0.08 E-value:0.76)

DALI match       ................***********...                              
Query         15 IKAGNEHLEMIVVPEWGSNVISLVDKTTNV-------------QLLREPETAESFHDTPT     61
d1siha1       27 IEWEKWSLDVGFDVREGVVLHNIAFRDGDRLRPIINRASIAEMVVPYGDPSPIRSWQNYF     86

DALI match                                                                   
Query         62 LYG-IPILFPPNRISDG-------------TFSFRGRTYHFDINEKDKHNHLHGFLYHEK    107
d1siha1       87 DTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIR-----NGICMHEEDWGIL    141

DALI match                                        ************.. ..........
Query        108 WNVVTTKQTDEGVIVETEIDLSELPHVQKQFPHHAVVRMTYTIKENTLFKHATVMNKG    165
d1siha1      142 AKHSDLWSGINYTRRNRRMVISFF-----TTIGNXDYGFYWYLYLDG-TIEFEAKATG    193

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20: d1n9ea1 Lysyl oxidase PplO, domain 3 (svm: 1.392)

SCOP Superfamily: Amine oxidase catalytic domain | SCOP Fold: Supersandwich | SCOP Class: All beta proteins

Consensus: 0.52 Contact: 2266
Modified z-scores:
dali:1.00 daliz:1.00 gdtts:1.00 tmscore:1.00 rmsd:0.34 AHM:0.37 LBcontacta:1.00 LBcontactb:1.00 LHM:0.17
id:0.99 blosum:0.01 compass:0.09 pearson:0.99
Scaled scores:
dali:0.77 daliz:0.47 gdtts:0.56 tmscore:0.76 rmsd:0.85 AHM:0.78 LBcontacta:0.61 LBcontactb:0.70 LHM:0.46
id:0.02 blosum:0.05 compass:0.14 pearson:0.15

hit structure alignment

DALI alignment (Z-score: 12.0 Raw score:1447.70)

Query          1 ----------------ANFIEKITylgtpaIKAGNEHLEMIVVPE--WGSNVISLVDKtt     42
d1n9ea1        1 hlddrksprlvepegrRWAYDGEE------EYFSWMDWGFYTSWSrdTGISFYDITFK--     52

Query         43 NVQLLRepetaesfhdtptlyGIPILFPpnrisdgtfsFRGR---TYHFdinekdkhnhl     99
d1n9ea1       53 GERIVY---------------ELSLQEL------iaeyGSDDpfnQHTF-----------     80

Query        100 HGFL-yHEKW-------------------------------nVVTTKQTD----------    117
d1n9ea1       81 YSDIsyGVGNrfslvpgydcpatagyfttdtfeydefynrtlSYCVFENQedysllrhtg    140

Query        118 ---------EGVIVETEIDLSelphvqkqfphHAVVRMTYTIKE-NTLFKHATVMNKGKE    167
d1n9ea1      141 asysaitqnPTLNVRFISTIG-----------NXDYNFLYKFFLdGTLEVSVRAAGYIQA    189

Query        168 ----------------------AFPWGIGYHTTFIfpaeSSLFSLtadqqwelderllpt    205
d1n9ea1      190 gywnpetsapyglkihdvlsgsFHDHVLNYKVDLDvggtKNRASK----yvmkdvdveyp    245

Query        206 gklmdvpykealHEGMDLrhKQLDDVFLSSyqKRGGEnQAVIYHQHAH------ISIIYK    259
d1n9ea1      246 wapgtvyntkqiAREVLE--KEDFNGINWP--ENGQG-ILLIESAEETnsfgnpRAYNIM    300

Query        260 ADEQFK-------------------HWVVYN---------------------------AD    273
d1n9ea1      301 PGGGGVhrivknsrsgpetqnwarsNLFLTKhkdeelrsstalntnalydppvnfnafLD    360

Query        274 GK---qGYLCPEPYTWvtnavnldlpssltglqvlePGEE--TTAKSSITIELN------    322
d1n9ea1      361 DEsldgEDIVAWVNLG---------lhhlpnsndlpNTIFstAHASFMLTPFNYfdsens    411

Query        323 -------------------------------------------------    323
d1n9ea1      412 rdttqqvfytyddeteesnwefygndwsscglevpepnfedytygrgtr    460

hit structure alignment

FAST alignment (Normalized score: 5.38 Raw score:2071.00)

Query          1 ----------------ANFIEKITYLGT-PAIKAGNEHLEMIVVPEW-----GSNVISLV     38
d1n9ea1        1 HLDDRKSPRLVEPEGRRWAYD-------GEEEYFSWMDWGFYTS---WSRDTGISFYDIT     50

Query         39 DKT-TNVQLLREPETAESFHDTPTLY--GIPILFPPNRISDGTFSF-------------R     82
d1n9ea1       51 ---FKGERI-----------------VYELSLQ-------------ELIAEYGSDDPFNQ     77

Query         83 GRTYHFDINEKDKHNHLH----GFLYHEKWNV----------------------------    110
d1n9ea1       78 HTFY--------------SDISYGVGN-----RFSLVPGYDCPATAGYFTTDTFEYDEFY    118

Query        111 -----VTTKQT-------------------DEGVIVETEIDLSELPHVQKQFP-HHAVVR    145
d1n9ea1      119 NRTLSYCVFENQEDYSLLRHTGASYSAITQNPTLNVRFIST------------IGNXDYN    166

Query        146 MTYTIK-ENTLFKHATVMNKG-----------------------KEAFPWGIGYHTTFIF    181
d1n9ea1      167 FLYKFFLDGTLEVSVRAAGY-IQAGYWNPETSAPYGLKIHDVLSGSFHDHVLNYKVDLDV    225

Query        182 PAE---SSLFSLTADQQWELDERLLPTGKLMDVPYKEAL---------------------    217
d1n9ea1      226 ---GGTKNRASK---------------------------YVMKDVDVEYPWAPGTVYNTK    255

Query        218 -HEGMDLRHKQLDDVFLSSYQKRGGE--------------NQAVIYHQHA-------HIS    255
d1n9ea1      256 QIAREVLE------------------KEDFNGINWPENGQGILLIESAE-ETNSFGNPRA    296

Query        256 IIYKADEQFK--------------------HWVVYNADGKQ-------------------    276
d1n9ea1      297 YNIMPGGGG-VHRIVKNSRSGPETQNWARSNLFL-------TKHKDEELRSSTALNTNAL    348

Query        277 ------------------GYLCPEPYTWVTNAVNLDLPSSLTGLQVLEPGEE--------    310
d1n9ea1      349 YDPPVNFNAFLDDESLDGEDIVAWVN--------------------------LGLHHLPN    382

Query        311 -----------TTAKSSITIELN-------------------------------------    322
d1n9ea1      383 SNDLPNTIFSTAHASFMLTP---FNYFDSENSRDTTQQVFYTYDDETEESNWEFYGNDWS    439

Query        323 ---------------------    323
d1n9ea1      440 SCGLEVPEPNFEDYTYGRGTR    460

hit structure alignment

TMalign alignment (TM-score: 0.58 Raw score:188.02)

Query          1 ---------------ANFIEKITYLGTPAIKAGNEHLEMIVVPE--WGSNVISLVDKTTN     43
d1n9ea1        1 HLDDRKSPRLVEPEGRRWAYDGEE----EYFSWMD-WGFYTSWSRDTGISFYDITFK--G     53

Query         44 VQLLREPETAESFHDTPTLYGIPILFPPNRISDGTFSFRG--RTYHFDINEKDKHNHLHG    101
d1n9ea1       54 ERIVY--------------ELSLQELIA------EYGSDDPFNQHTFY-----------S     82

Query        102 FLY-HEKW--N-----------------------------VVTTKQTD------------    117
d1n9ea1       83 DISYGVGNRFSLVPGYDCPATAGYFTTDTFEYDEFYNRTLSYCVFENQEDYSLLRHTGAS    142

Query        118 -------EGVIVETEIDLSELPHVQKQFPHHAVVRMTYTIKE-NTLFKHATVMNKGKE--    167
d1n9ea1      143 YSAITQNPTLNVRFISTIG-----------NXDYNFLYKFFLDGTLEVSVRAAGYIQAGY    191

Query        168 ------------------AF-P-WGIGYHTTFIFPAESSLFSLTAD--------------    193
d1n9ea1      192 WNPETSAPYGLKIHDVLSGSFHDHVLNYKVDLDVGGTKNRASKYVMKDVDVEYPWAPGTV    251

Query        194 -----QQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVFLSSYQKRGGENQAVIY    248
d1n9ea1      252 YNTKQ-----------------------IAREVLE--KEDFNGINWP--ENGQG-ILLIE    283

Query        249 HQHAH------ISIIYKADEQFK-------------------HWVVYN------------    271
d1n9ea1      284 SAEETNSFGNPRAYNIMPGGGGVHRIVKNSRSGPETQNWARSNLFLTKHKDEELRSSTAL    343

Query        272 --------------A-D-GKQ--GYLCPEPYTWVTNAVNLDLPSSLTGLQVL---EP-GE    309
d1n9ea1      344 NTNALYDPPVNFNAFLDDESLDGEDIVAWVNLG--------------LHHLPNSNDLPNT    389

Query        310 -E--TTAKSSITI--ELN------------------------------------------    322
d1n9ea1      390 IFSTAHASFMLTPFNYFDSENSRDTTQQVFYTYDDETEESNWEFYGNDWSSCGLEVPEPN    449

Query        323 -----------    323
d1n9ea1      450 FEDYTYGRGTR    460

hit structure alignment

HHsearch alignment (Probability: 0.02 E-value:0.45)

DALI match        ...............***********. ....
Query         14 AIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQL     46
d1n9ea1       26 YFSWMDWGFYTSWSRDTGISFYDITFKGERIVY     58

hit structures.

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21: d1qwna2 Golgi alpha-mannosidase II (svm: 1.580)

SCOP Superfamily: Galactose mutarotase-like | SCOP Fold: Supersandwich | SCOP Class: All beta proteins

Consensus: 0.44 Contact: 2176
Modified z-scores:
dali:1.00 daliz:1.00 gdtts:1.00 tmscore:1.00 rmsd:0.40 AHM:0.48 LBcontacta:1.00 LBcontactb:1.00 LHM:0.12
id:0.99 blosum:0.00 compass:0.29 pearson:1.00
Scaled scores:
dali:0.76 daliz:0.47 gdtts:0.53 tmscore:0.71 rmsd:0.81 AHM:0.73 LBcontacta:0.62 LBcontactb:0.71 LHM:0.51
id:0.02 blosum:0.03 compass:0.10 pearson:0.14

hit structure alignment

DALI alignment (Z-score: 10.6 Raw score:1329.80)

Query          1 ------------------------------------------------------------      1
d1qwna2        1 yftlddsrwpgsgvedsrttiilgedilpskhvvmhntlphwreqlvdfyvsspfvsvtd     60

Query          1 ------------------------------------------------------------      1
d1qwna2       61 lannpveaqvspvwswhhdtltktihpqgsttkyriifkarvppmglatyvltisdskpe    120

Query          1 -------------------anfiekitylGTPAIKAGN-EHLEMIVVPEwgSNVISLVDK     40
d1qwna2      121 htsyasnlllrknptslplgqypedvkfgDPREISLRVgNGPTLAFSEQ--GLLKSIQLT    178

Query         41 T-TNVQLLrepetaesfhdtptlyGIPILFppNRISD--gTFSFrgrtyhfdinekdkhN     97
d1qwna2      179 QdSPHVPV----------------HFKFLK--YGVRShgdRSGA----------ylflpN    210

Query         98 HLHGFLYHEKWNVvTTKQTDEGVIVETEIDlselphvqkqfphhaVVRMTYTIKENTLFK    157
d1qwna2      211 GPASPVELGQPVV-LVTKGKLESSVSVGLP---------------SVVHQTIMRGGAPEI    254

Query        158 HATVMNKGkeaFPWGIGYHTTFIFPAessLFSLTADqqwelderllptgklmdvpykeaL    217
d1qwna2      255 RNLVDIGS--lDNTEIVMRLETHIDS-gdIFYTDLN--------------------glqF    291

Query        218 HEGM-dlrhkqldDVFLSSyqkrggeNQAVIYHQhaHISIIYKADEQfKHWVVYNadgkq    276
d1qwna2      292 IKRRrldklplqaNYYPIP-------SGMFIEDA--NTRLTLLTGQP-LGGSSLA-----    336

Query        277 gYLCPEPYTWvtnaVNLDLpssltglqvlepgEETTAKSSITIELN--------------    322
d1qwna2      337 -SGELEIMQD--rrLASDD--erglgqgvldnKPVLHIYRLVLEKVnncvrpsklhpagy    391

Query        323 ------------------------------------------------------------    323
d1qwna2      392 ltsaahkasqslldpldkfifaenewigaqgqfggdhpsaredldvsvmrrltkssaktq    451

Query        323 ------------------------------------------------------------    323
d1qwna2      452 rvgyvlhrtnlmqcgtpeehtqkldvchllpnvarcerttltflqnlehldgmvapevcp    511

Query        323 -----------    323
d1qwna2      512 metaayvsshs    522

hit structure alignment

FAST alignment (Normalized score: 5.07 Raw score:2076.00)

Query          1 ANFIEKITYLG-------------------------------------------------     11
d1qwna2        1 -----------YFTLDDSRWPGSGVEDSRTTIILGEDILPSKHVVMHNTLPHWREQLVDF     49

Query         12 ------------------------------------------------------------     12
d1qwna2       50 YVSSPFVSVTDLANNPVEAQVSPVWSWHHDTLTKTIHPQGSTTKYRIIFKARVPPMGLAT    109

Query         12 -----------------------------------------TPAIKAG-NEHLEMIVVPE     29
d1qwna2      110 YVLTISDSKPEHTSYASNLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGNGPTLAF---    166

Query         30 -WGSNVISLVDK----TTNVQLLREPETAESFHDTPTLY-GIPILFPPNRISDGTFSFRG     83
d1qwna2      167 SEQGLLKSIQ--LTQDSPHVP------------------VHFKFL--KYGV---------    195

Query         84 RTYHFDINEKDKHNHLHGFLY----------------------HEKWNVVTTKQTDEGVI    121
d1qwna2      196 ---------------------RSHGDRSGAYLFLPNGPASPVELGQPV-VLVTKGKLESS    233

Query        122 VETEIDLSELPHVQKQFPHHA--VVRMTYTIKENTLFKHATVMNKGKEA---FPWGIGYH    176
d1qwna2      234 VSVG-----------------LPSVVHQTIMRGGAPEIRNLVDI-----GSLDNTEIVMR    271

Query        177 TTFIFPAES---SLFSLTADQQWELDERLLPTGKLMDVPYKEAL------HEGMDL-RHK    226
d1qwna2      272 LETHI----DSGDIFYT---------------------------DLNGLQFIKRRRLDKL    300

Query        227 QLD---DVFLSSYQKRGGE-NQAVIYHQHAHISIIYKADEQF--KHWVVYNADGKQGY--    278
d1qwna2      301 P--LQANYYPI--------PSGMFIED--ANTRLTLLTG---QPLGGSS---------LA    336

Query        279 -LCPEPYTWVTNA-----VNLDLPSSLTGLQVLEPG----------EETTAKSSITIELN    322
d1qwna2      337 SGELEIMQ-----DRRLASDDE--------------RGLGQGVLDNKPVLHIYRLVLE--    375

Query        323 ------------------------------------------------------------    323
d1qwna2      376 KVNNCVRPSKLHPAGYLTSAAHKASQSLLDPLDKFIFAENEWIGAQGQFGGDHPSAREDL    435

Query        323 ------------------------------------------------------------    323
d1qwna2      436 DVSVMRRLTKSSAKTQRVGYVLHRTNLMQCGTPEEHTQKLDVCHLLPNVARCERTTLTFL    495

Query        323 ---------------------------    323
d1qwna2      496 QNLEHLDGMVAPEVCPMETAAYVSSHS    522

hit structure alignment

TMalign alignment (TM-score: 0.52 Raw score:167.82)

Query          1 ------------------------------------------------------------      1
d1qwna2        1 YFTLDDSRWPGSGVEDSRTTIILGEDILPSKHVVMHNTLPHWREQLVDFYVSSPFVSVTD     60

Query          1 ------------------------------------------------------------      1
d1qwna2       61 LANNPVEAQVSPVWSWHHDTLTKTIHPQGSTTKYRIIFKARVPPMGLATYVLTISDSKPE    120

Query          1 ----ANFIEKI--------------------TYLGTPAIKAGN-EHLEMIVVPEWGSNVI     35
d1qwna2      121 HTSY-ASNLLLRKNPTSLPLGQYPEDVKFGD----PREISLRVGNGPTLAFSEQ--GLLK    173

Query         36 SLVDKTTNVQLLREPETAESFHDTPTLYGIPILFPPNRISDG-TFSF-----RGRTYHFD     89
d1qwna2      174 SIQLTQDSPHVPV---------------HFKFL--KYGVRSHGDRSGAYLFL--------    208

Query         90 INEKDKHNHLHGFLYHEKWNVVTTKQTDEGVIVETEIDLSELPHVQKQFPHHAVVRMTYT    149
d1qwna2      209 -----PNGPASPVE-LGQPVVLVTKGKL-ESSVSVGL-P--------------SVVHQTI    246

Query        150 IKENTLFKHATVMNKGKEAFPWGIGYHTTFIFPAESSLFSLTAD--QQWELDERLLPTGK    207
d1qwna2      247 MRGGAPEIRNLVDI-G-SLDNTEIVMRLETHIDSG-DIFYTDLNGL--------------    289

Query        208 LMDVPYKEALHEGMDLRHKQ-L-D-DVFLSSYQKRGGENQAVIYHQHAHISIIYKADEQF    264
d1qwna2      290 -------Q-FIK-R-R-RLDKLPLQANYYPIP------SGMFIEDAN--TRLTLLTGQ-P    329

Query        265 KHWVVYNADGKQGYLCPEPYTWVTNAVNLD-LPS--SLTGLQVLEPGEETTAKSSITIEL    321
d1qwna2      330 LGGSSLA------SGELEIMQDR-RLASDDERGLGQ--GVLDNK----PVLHIYRLVLEK    376

Query        322 ------------------------------------------------------------    322
d1qwna2      377 VNNCVRPSKLHPAGYLTSAAHKASQSLLDPLDKFIFAENEWIGAQGQFGGDHPSAREDLD    436

Query        322 ----------------------------N-------------------------------    322
d1qwna2      437 VSVMRRLTKSSAKTQRVGYVLHRTNLMQCGTPEEHTQKLDVCHLLPNVARCERTTLTFLQ    496

Query        323 --------------------------    323
d1qwna2      497 NLEHLDGMVAPEVCPMETAAYVSSHS    522

hit structure alignment

HHsearch alignment (Probability: 0.02 E-value:0.26)

DALI match                                          
Query         14 AIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLR     48
d1qwna2      312 GMFIEDANTRLTLLTGQPLGGSSL--ASGELEIMQ    344

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22: d1ekma1 Copper amine oxidase, domain 3 (svm: 1.438)

SCOP Superfamily: Amine oxidase catalytic domain | SCOP Fold: Supersandwich | SCOP Class: All beta proteins

Consensus: 0.42 Contact: 2226
Modified z-scores:
dali:1.00 daliz:1.00 gdtts:1.00 tmscore:1.00 rmsd:0.36 AHM:0.39 LBcontacta:1.00 LBcontactb:1.00 LHM:0.15
id:0.94 blosum:0.01 compass:0.18 pearson:1.00
Scaled scores:
dali:0.77 daliz:0.48 gdtts:0.56 tmscore:0.76 rmsd:0.85 AHM:0.78 LBcontacta:0.64 LBcontactb:0.71 LHM:0.47
id:0.00 blosum:0.03 compass:0.15 pearson:0.17

hit structure alignment

DALI alignment (Z-score: 12.0 Raw score:1508.40)

Query          1 --------------ANFIEKitylgtpaIKAGNEHLEMIVVPE--WGSNVISLVDKT--T     42
d1ekma1        1 peappinvtqpegvSFKMTG--------NVMEWSNFKFHIGFNyrEGIVLSDVSYNDhgN     52

Query         43 NVQLLRepetaesfhdtptlyGIPILFPpnrisdgtfsFRGR--TYHFdinekdkhnhlH    100
d1ekma1       53 VRPIFH---------------RISLSEM------ivpyGSPEfpHQRK---------haL     82

Query        101 GFL--YHEK--------------------------------wnVVTTKQTD---------    117
d1ekma1       83 DIGeyGAGYmtnplslgcdckgvihyldahfsdragdpitvknAVCIHEEDdgllfkhsd    142

Query        118 -------------EGVIVETEIDLSelphvqkqfphHAVVRMTYTIKE-NTLFKHATVMN    163
d1ekma1      143 frdnfatslvtraTKLVVSQIFTAA-----------NYEYCLYWVFMQdGAIRLDIRLTG    191

Query        164 KGKE-----------------------afPWGIGYHTTFIfpaeSSLFSLTadqqwelde    200
d1ekma1      192 ILNTyilgddeeagpwgtrvypnvnahnhQHLFSLRIDPRidgdGNSAAAC----dakss    247

Query        201 rllptgklmdvpykealhEGMDlrhKQLD-DVFLSSYqkRGGEnQAVIYHQHA-------    252
d1ekma1      248 pyplgspenmygnafyseKTTF---KTVKdSLTNYES--ATGR-SWDIFNPNKvnpysgk    301

Query        253 HISIIYKAdEQFK-------------------HWVVYNAD--------------------    273
d1ekma1      302 PPSYKLVS-TQCPpllakegslvakrapwashSVNVVPYKdnrlypsgdhvpqwsgdgvr    360

Query        274 ------------gkqGYLCPEPYTWvtnavnldlpssltgLQVLE------PGEETTAKS    315
d1ekma1      361 gmrewigdgsenidnTDILFFHTFG---------------ITHFPapedfpLMPAEPITL    405

Query        316 SITIELN------------------------    322
d1ekma1      406 MLRPRHFftenpgldiqpsyamttseakrav    436

hit structure alignment

FAST alignment (Normalized score: 5.53 Raw score:2070.00)

Query          1 --------------ANFIEKITYLGTPA--IKAGNEHLEMIVVPEW-----GSNVISLVD     39
d1ekma1        1 PEAPPINVTQPEGVSFKM----------TGNVMEWSNFKFHIG---FNYREGIVLSDVSY     47

Query         40 K---TTNVQLLREPETAESFHDTPTLYG------IPILFPPNRISDGTFSF-----RGRT     85
d1ekma1       48 -NDHGNVRPI------------------FHRISLSEMI-------------VPYGSPEFP     75

Query         86 YHFDINEKDKHNHLHG-----FLYHEKWNV------------------------------    110
d1ekma1       76 H---------------QRKHALDIGE----YGAGYMTNPLSLGCDCKGVIHYLDAHFSDR    116

Query        111 ----------VTTKQT----------------------DEGVIVETEIDLSELPHVQKQF    138
d1ekma1      117 AGDPITVKNAVCIHEEDDGLLFKHSDFRDNFATSLVTRATKLVVSQIFT-----------    165

Query        139 P-HHAVVRMTYTIK-ENTLFKHATVMNKG-------------------------KEAFPW    171
d1ekma1      166 -AANYEYCLYWVFMQDGAIRLDIRL----TGILNTYILGDDEEAGPWGTRVYPNVNAHNH    220

Query        172 GIGYHTTFIFPAE------SSLFSLTADQQWELDERLLPTGKLMDVPYKEAL--------    217
d1ekma1      221 QHLFSLRID----PRIDGDGNSAAA---------------------------CDAKSSPY    249

Query        218 --------------HEGMDLRHK--QLDDVFLSS-YQKRGGENQAVIYHQHA-------H    253
d1ekma1      250 PLGSPENMYGNAFYSEKTTFKT-VKDSLTN----YESAT--GRSWDIFNPNKVNPYSGKP    302

Query        254 ISIIYKADEQFKHW--------------------VVYN----------------------    271
d1ekma1      303 PSYKLV-STQC---PPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDG    358

Query        272 --------ADGKQ-------GYLCPEPYTWVTNAVNLDLPSSLTGLQVLEP-----GEET    311
d1ekma1      359 VRGMREWIGDGS-ENIDNTDILFFHTFG----------------ITHFPAPEDFPLMPAE    401

Query        312 TAKSSITIELN---------------------------    322
d1ekma1      402 PITLMLRP---RHFFTENPGLDIQPSYAMTTSEAKRAV    436

hit structure alignment

TMalign alignment (TM-score: 0.59 Raw score:188.50)

Query          1 -------------ANFIEKITYLGTPAIKAGNEHLEMIVVPE--WGSNVISLVDKT--TN     43
d1ekma1        1 PEAPPINVTQPEGVSFKMTG------NVMEWSN-FKFHIGFNYREGIVLSDVSYNDHGNV     53

Query         44 VQLLREPETAESFHDTPTLYGIPILFPPNRISDGTFSFRG--RTYHFDINEKDKHNHLHG    101
d1ekma1       54 RPIFH--------------RISLSEMIV--P----YGSPEFPHQRKHA--------LDIG     85

Query        102 FLYHEK-W--------------------------------NVVTTKQT------------    116
d1ekma1       86 EYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDGLLFKHSDFRD    145

Query        117 ---------DEGVIVETEIDLSELPHVQKQFPHHAVVRMTYTIKE-NTLFKHATVMNKGK    166
d1ekma1      146 NFATSLVTRATKLVVSQIFTAA-----------NYEYCLYWVFMQDGAIRLDIRLTGILN    194

Query        167 E---------------------AF-P-WGIGYHTTFIFPAESSLFSLTAD----------    193
d1ekma1      195 TYILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKSSPYPLGSP    254

Query        194 ---------QQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVFLSSYQKRGGENQ    244
d1ekma1      255 ENMYGNAFY-----------------------SEKTTFK--TVKDSLTNYES-AT-G-RS    286

Query        245 AVIYHQHAH-------ISIIYKADEQFK-----------------HWVVYNA--------    272
d1ekma1      287 WDIFNPNKVNPYSGKPPSYKLVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYP    346

Query        273 ------------------------DGK-QGYLCPEPYTWVTNAVNLDLPSSLTGLQVL--    305
d1ekma1      347 SGDHVPQWSGDGVRGMREWIGDGSENIDNTDILFFHTFG--------------ITHFPAP    392

Query        306 -EP-GE-ETTAKSSITI--ELN----------------------    322
d1ekma1      393 EDFPLMPAEPITLMLRPRHFFTENPGLDIQPSYAMTTSEAKRAV    436

hit structure alignment

HHsearch alignment (Probability: 0.02 E-value:0.24)

DALI match        ************.. ..........
Query        140 HHAVVRMTYTIKENTLFKHATVMNKG    165
d1ekma1      167 ANYEYCLYWVFMQDG-AIRLDIRLTG    191

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23: d1ksia1 Copper amine oxidase, domain 3 (svm: 1.468)

SCOP Superfamily: Amine oxidase catalytic domain | SCOP Fold: Supersandwich | SCOP Class: All beta proteins

Consensus: 0.49 Contact: 2253
Modified z-scores:
dali:1.00 daliz:1.00 gdtts:1.00 tmscore:1.00 rmsd:0.34 AHM:0.37 LBcontacta:1.00 LBcontactb:1.00 LHM:0.18
id:0.99 blosum:0.01 compass:0.12 pearson:0.99
Scaled scores:
dali:0.77 daliz:0.48 gdtts:0.58 tmscore:0.76 rmsd:0.85 AHM:0.79 LBcontacta:0.62 LBcontactb:0.70 LHM:0.46
id:0.02 blosum:0.04 compass:0.13 pearson:0.15

hit structure alignment

DALI alignment (Z-score: 12.3 Raw score:1456.00)

Query          1 ----------------------aNFIEKItylgtpaIKAGNEHLEMIVVPE--WGSNVIS     36
d1ksia1        1 vskqsppfgpkqhsltshqpqgpGFQING-------HSVSWANWKFHIGFDvrAGIVISL     53

Query         37 LVDKT----TNVQLLRepetaesfhdtptlyGIPILFPpnrisdgtfsFRGR---TYHFd     89
d1ksia1       54 ASIYDlekhKSRRVLY---------------KGYISEL------fvpyQDPTeefYFKT-     91

Query         90 inekdkhnhlHGFL----YHEKWN-------------------------------VVTTK    114
d1ksia1       92 ----------FFDSgefgFGLSTVslipnrdcpphaqfidtyvhsangtpillknAICVF    141

Query        115 QTD-----------------------EGVIVETEIDLSelphvqkqfphHAVVRMTYTIK    151
d1ksia1      142 EQYgnimwrhtengipnesieesrteVNLIVRTIVTVG-----------NXDNVIDWEFK    190

Query        152 E-NTLFKHATVMNKG---------------------------KEAFPWGIGYHTTFIfpa    183
d1ksia1      191 AsGSIKPSIALSGILeikgtnikhkdeikedlhgklvsansiGIYHDHFYIYYLDFDidg    250

Query        184 eSSLFSLtadqqwelderllptgklmdvpykealHEGMdlrhKQLD-DVFLSSyqkRGGE    242
d1ksia1      251 tHNSFEK-----tslktvrikdgsskrksywtteTQTA----KTESdAKITIG---LAPA    298

Query        243 nQAVIYHQHA------HISIIYKADEQ------------------fKHWVVYN-------    271
d1ksia1      299 -ELVVVNPNIktavgnEVGYRLIPAIPahpllteddypqirgaftnYNVWVTAynrtekw    357

Query        272 ---------------------ADGK-qGYLCPEPYTWvtnavnldlpssltglQVLEP--    307
d1ksia1      358 agglyvdhsrgddtlavwtkqNREIvnKDIVMWHVVG----------------IHHVPaq    401

Query        308 -----GEETTAKSSITIELN--------------------    322
d1ksia1      402 edfpiMPLLSTSFELRPTNFfernpvlktlsprdvawpgc    441

hit structure alignment

FAST alignment (Normalized score: 5.36 Raw score:2018.00)

Query          1 AN-----------------------FIEKITYLGTPA-IKAGNEHLEMIVVPE----WGS     32
d1ksia1        1 --VSKQSPPFGPKQHSLTSHQPQGPGFQIN-------GHSVSWANWKFHIG--FDVRAGI     49

Query         33 NVISLVDK-----TTNVQLLREPETAESFHDTPTLYGIPILFPPNRISDGTFSFRGRTYH     87
d1ksia1       50 VISLASI-YDLEKHKSRRVL----------------------------------------     68

Query         88 FDINEKDKHNHLHGFLYHEKWNV-------------------------------------    110
d1ksia1       69 -----------------------YKGYISELFVPYQDPTEEFYFKTFFDSGEFGFGLSTV    105

Query        111 --------------------------------VTTKQT----------------------    116
d1ksia1      106 SLIPNRDCPPHAQFIDTYVHSANGTPILLKNAICVFE-QYGNIMWRHTENGIPNESIEES    164

Query        117 --DEGVIVETEIDLSELPHVQKQFP-HHAVVRMTYTI-KENTLFKHATVMNKG-------    165
d1ksia1      165 RTEVNLIVRTIVT------------VGNXDNVIDWEFKASGSIKPSIALS---GILEIKG    209

Query        166 -----------------------KEAFPWGIGYHTTFIFPAE----SSLFSLTADQQWEL    198
d1ksia1      210 TNIKHKDEIKEDLHGKLVSANSIGIYHDHFYIYYLDFD----IDGTHNSFEK--------    257

Query        199 DERLLPTGKLMDVPYKEAL--------------------HEGMDLRHKQLD----DVFLS    234
d1ksia1      258 -------------------TSLKTVRIKDGSSKRKSYWTTETQTAK-----TESDAKIT-    292

Query        235 SYQKRGGENQAVIYHQHA-------HISIIYKADEQFK----------------------    265
d1ksia1      293 -IGLAP--AELVVVNPN-IKTAVGNEVGYRLIPA----IPAHPLLTEDDYPQIRGAFTNY    344

Query        266 HWVVYNADGKQ------------------------------------GYLCPEPYTWVTN    289
d1ksia1      345 NVWV-------TAYNRTEKWAGGLYVDHSRGDDTLAVWTKQNREIVNKDIVMWHV-----    392

Query        290 AVNLDLPSSLTGLQVLE-------PGEETTAKSSITIELN--------------------    322
d1ksia1      393 -----------VGIHHVPAQEDFPIMPLLSTSFELRP---TNFFERNPVLKTLSPRDVAW    438

Query        323 ---    323
d1ksia1      439 PGC    441

hit structure alignment

TMalign alignment (TM-score: 0.58 Raw score:187.63)

Query          1 --------------------A-NFIEKITYLGTPAIKAGNEHLEMIVVPE--WGSNVISL     37
d1ksia1        1 VSKQSPPFGPKQHSLTSHQPQGPGFQING-----HSVSWAN-WKFHIGFDVRAGIVISLA     54

Query         38 VDKT----TNVQLLREPETAESFHDTPTLYGIPILFPPNRISDGTFSFRG---RTYHFDI     90
d1ksia1       55 SIYDLEKHKSRRVLY---------------KGYISELF--V----PYQDPTEEFYFKTFF     93

Query         91 NEKDKHNHLHGFLYHEKW--------------------------------NVVTTKQT--    116
d1ksia1       94 -------DSGEFGFGLSTVSLIPNRDCPPHAQFIDTYVHSANGTPILLKNAICVFEQYGN    146

Query        117 --------------------DEGVIVETEIDLSELPHVQKQFPHHAVVRMTYTIK-ENTL    155
d1ksia1      147 IMWRHTENGIPNESIEESRTEVNLIVRTIVTVG-----------NXDNVIDWEFKASGSI    195

Query        156 FKHATVMNKGKE-------------------------A--FPWGIGYHTTFIFPAESSLF    188
d1ksia1      196 KPSIALSGILEIKGTNIKHKDEIKEDLHGKLVSANSIGIYHDHFYIYYLDFDIDGTHNSF    255

Query        189 SLTAD-----------------QQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDV    231
d1ksia1      256 EKTSLKTVRIKDGSSKRKSYWT-----------------------TETQTAK--TESDAK    290

Query        232 FLSSYQKRGGENQAVIYHQHAH------ISIIYKADEQFK------------------HW    267
d1ksia1      291 ITIG--LA-PA-ELVVVNPNIKTAVGNEVGYRLIPAIPAHPLLTEDDYPQIRGAFTNYNV    346

Query        268 VVYNA----------------------------DGK-QGYLCPEPYTWVTNAVNLDLPSS    298
d1ksia1      347 WVTAYNRTEKWAGGLYVDHSRGDDTLAVWTKQNREIVNKDIVMWHVVG------------    394

Query        299 LTGLQVLE---P---GEETTAKSSITI--ELN------------------    322
d1ksia1      395 ---IHHVPAQEDFPIMPLLSTSFELRPTNFFERNPVLKTLSPRDVAWPGC    441

hit structure alignment

HHsearch alignment (Probability: 0.02 E-value:0.22)

DALI match        ************.. ..........
Query        140 HHAVVRMTYTIKENTLFKHATVMNKG    165
d1ksia1      179 GNXDNVIDWEFKASG-SIKPSIALSG    203

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24: d1oaca1 Copper amine oxidase, domain 3 (svm: 1.438)

SCOP Superfamily: Amine oxidase catalytic domain | SCOP Fold: Supersandwich | SCOP Class: All beta proteins

Consensus: 0.45 Contact: 2196
Modified z-scores:
dali:1.00 daliz:1.00 gdtts:1.00 tmscore:1.00 rmsd:0.35 AHM:0.34 LBcontacta:1.00 LBcontactb:1.00 LHM:0.15
id:0.95 blosum:0.01 compass:0.15 pearson:0.99
Scaled scores:
dali:0.76 daliz:0.48 gdtts:0.54 tmscore:0.75 rmsd:0.85 AHM:0.81 LBcontacta:0.65 LBcontactb:0.72 LHM:0.50
id:0.00 blosum:0.03 compass:0.15 pearson:0.16

hit structure alignment

DALI alignment (Z-score: 11.8 Raw score:1421.60)

Query          1 --------------ANFIEKitylgtpaIKAGNEHLEMIVVPEW--GSNVISLVDKT--T     42
d1oaca1        1 pavkpmqiiepegkNYTITG--------DMIHWRNWDFHLSMNSrvGPMISTVTYNDngT     52

Query         43 NVQLLRepetaesfhdtptlyGIPILFPpnrisdgtfsFRGR---TYHFdinekdkhnhl     99
d1oaca1       53 KRKVMY---------------EGSLGGM------ivpyGDPDigwYFKA-----------     80

Query        100 hGFLY--HEKW---------------------------------nVVTTKQTD-------    117
d1oaca1       81 yLDSGdyGMGTltspiargkdapsnavllnetiadytgvpmeiprAIAVFERYagpeykh    140

Query        118 ------------EGVIVETEIDLSelphvqkqfphHAVVRMTYTIKE-NTLFKHATVMNK    164
d1oaca1      141 qemgqpnvsterRELVVRWISTVG-----------NXDYIFDWIFHEnGTIGIDAGATGI    189

Query        165 G------------------------------KEAFPWGIGYHTTF---IFPAessLFSLt    191
d1oaca1      190 EavkgvkaktmhdetakddtrygtlidhnivGTTHQHIYNFRLDLdvdGENN---SLVA-    245

Query        192 adqqwelderllptgklmdvpykEALHegmdlrhKQLD-DVFLSSYqkrgGENQaVIYH-    249
d1oaca1      246 ---mdpvvkpntaggprtstmqvNQYN------iGNEQdAAQKFDP----GTIR-LLSNp    291

Query        250 QHAH-----ISIIYKADEQ------------------------fKHWVVYN---------    271
d1oaca1      292 NKENrmgnpVSYQIIPYAGgthpvakgaqfapdewiyhrlsfmdKQLWVTRyhpgerfpe    351

Query        272 --------------------ADGKQGYLCPEPYTWvtnavnldlpssltglQVLEP----    307
d1oaca1      352 gkypnrsthdtglgqyskdnESLDNTDAVVWMTTG----------------TTHVAraee    395

Query        308 ---GEETTAKSSITIELN-----------    322
d1oaca1      396 wpiMPTEWVHTLLKPWNFfdetptlgalk    424

hit structure alignment

FAST alignment (Normalized score: 5.85 Raw score:2161.00)

Query          1 --------------ANFIEKITYLGTPA--IKAGNEHLEMIVV-PEW-GSNVISLVDK--     40
d1oaca1        1 PAVKPMQIIEPEGKNYTI----------TGDMIHWRNWDFHLSMNSRVGPMISTVTY-ND     49

Query         41 -TTNVQLLREPETAESFHDTPTLY--GIPILFPPNRISDGTFSFRGRTYHFDINEKDKHN     97
d1oaca1       50 NGTKRKV-----------------MYEGSLG-----------------------------     63

Query         98 HLHG------------------------FLYHEKWNV-----------------------    110
d1oaca1       64 ----GMIVPYGDPDIGWYFKAYLDSGDYGMGT-----LTSPIARGKDAPSNAVLLNETIA    114

Query        111 ------------VTTKQT-------------------DEGVIVETEIDLSELPHVQKQFP    139
d1oaca1      115 DYTGVPMEIPRAIAVFERYAGPEYKHQEMGQPNVSTERRELVVRWIST------------    162

Query        140 -HHAVVRMTYTIK-ENTLFKHATVMNKG--------------------------------    165
d1oaca1      163 VGNXDYIFDWIFHENGTIGIDAGATG--IEAVKGVKAKTMHDETAKDDTRYGTLIDHNIV    220

Query        166 KEAFPWGIGYHTTFIFPAE----SSLFSLTADQQWELDERLLPTGKLMDVPYKEAL----    217
d1oaca1      221 GTTHQHIYNFRLDLD----VDGENNSLVA---------------------------MDPV    249

Query        218 -----------------HEGMDLRHK----QLDDVFLSSYQKRGGE--NQAVIYHQHA--    252
d1oaca1      250 VKPNTAGGPRTSTMQVNQYNI-----GNEQDAAQKFD---------PGTIRLLSNPN-KE    294

Query        253 -----HISIIYKADEQFK------------------------------HWVVYNADGKQ-    276
d1oaca1      295 NRMGNPVSYQII------PYAGGTHPVAKGAQFAPDEWIYHRLSFMDKQLWV-------T    341

Query        277 -----------------------------------GYLCPEPYTWVTNAVNLDLPSSLTG    301
d1oaca1      342 RYHPGERFPEGKYPNRSTHDTGLGQYSKDNESLDNTDAVVWMT-----------------    384

Query        302 -LQVLE--------PGEETTAKSSITIELN--------------    322
d1oaca1      385 TGTTH-VARAEEWPIMPTEWVHTLLKP---WNFFDETPTLGALK    424

hit structure alignment

TMalign alignment (TM-score: 0.58 Raw score:185.60)

Query          1 -------------ANFIEKITYLGTPAIKAGNEHLEMIVVPE--WGSNVISLVDKT--TN     43
d1oaca1        1 PAVKPMQIIEPEGKNYTITG------D-MIHWRNWDFHLSMNSRVGPMISTVTYNDNGTK     53

Query         44 VQLLREPETAESFHDTPTLYGIPILFPPNRISDGTFSFRG---RTYHFDINEKDKHNHLH    100
d1oaca1       54 RKVMY--------------EGSLGGMIV-------PYGDPDIGWYFKAY--------LDS     84

Query        101 GFLYHEK-W-N------------------------------VVTTKQTD-----------    117
d1oaca1       85 GDYGMGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERYAGPEYKHQEMG    144

Query        118 --------EGVIVETEIDLSELPHVQKQFPHHAVVRMTYTIKE-NTLFKHATVMNKGKE-    167
d1oaca1      145 QPNVSTERRELVVRWISTVG-----------NXDYIFDWIFHENGTIGIDAGATGIEAVK    193

Query        168 ---------------------------A--FPWGIGYHTTFIFPAESSLFSLTAD-----    193
d1oaca1      194 GVKAKTMHDETAKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMDPVVKPN    253

Query        194 -----------QQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVFLSSYQKRGGE    242
d1oaca1      254 TAGGPRTSTMQ-----------------------VNQYNIG--NEQDAAQKFDP----GT    284

Query        243 NQAVIYHQHAH------ISIIYK-ADE----QFK-------------------HWVVYN-    271
d1oaca1      285 -IRLLSNPNKENRMGNPVSYQIIPYAGGTHPVAKGAQFAPDEWIYHRLSFMDKQLWVTRY    343

Query        272 -----------------------A----DGK-QGYLCPEPYTWVTNAVNLDLPSSLTGLQ    303
d1oaca1      344 HPGERFPEGKYPNRSTHDTGLGQYSKDNESLDNTDAVVWMTTG--------------TTH    389

Query        304 VL---EP-GE-ETTAKSSITI--ELN---------    322
d1oaca1      390 VARAEEWPIMPTEWVHTLLKPWNFFDETPTLGALK    424

hit structure alignment

HHsearch alignment (Probability: 0.12 E-value:0.98)

DALI match       ................***********                                 
Query         15 IKAGNEHLEMIVVPEWGSNVISLVDKT-------------TNVQLLREPETAESFHDTPT     61
d1oaca1       23 IHWRNWDFHLSMNSRVGPMISTVTYNDNGTKRKVMYEGSLGGMIVPYGDPDIGWYFKAYL     82

DALI match                                                                   
Query         62 LYG-IPILFPPNRISDG------------TFSFRGRTYHFDINEKDKHNHLHGFLYHEKW    108
d1oaca1       83 DSGDYGMGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPR----AIAVFERYAGPEY    138

DALI match                       ......           ************.. ..........  
Query        109 NVVTTKQTDEGVIVE-TEIDLSELPHVQKQFPHHAVVRMTYTIKENTLFKHATVMNKG--    165
d1oaca1      139 KHQEMGQPNVSTERRELVVRWIS-------TVGNXDYIFDWIFHENG-TIGIDAGATGIE    190

DALI match                                                  
Query        166 ---------------KEAFPWGIGYHTTFIFPAESSLFSLTAD    193
d1oaca1      191 AVKGVKAKTMHDETAKDDTRYGTLIDHNIVGTTHQHIYNFRLD    233

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25: d1jmma_ V-region of surface antigen I/II (SA I/II, PAC) (cs: 2.492)

SCOP Superfamily: V-region of surface antigen I/II (SA I/II, PAC) | SCOP Fold: Supersandwich | SCOP Class: All beta proteins

Consensus: 0.21 Contact: 844
Modified z-scores:
dali:0.99 daliz:0.98 gdtts:0.97 tmscore:0.98 rmsd:0.40 AHM:0.43 LBcontacta:0.97 LBcontactb:0.97 LHM:0.32
id:0.96 blosum:0.29 compass:0.44 pearson:0.98
Scaled scores:
dali:0.77 daliz:0.47 gdtts:0.51 tmscore:0.58 rmsd:0.78 AHM:0.70 LBcontacta:0.59 LBcontactb:0.72 LHM:0.22
id:0.04 blosum:0.07 compass:0.13 pearson:0.15

hit structure alignment

DALI alignment (Z-score: 3.3 Raw score:479.70)

Query          1 anfiekitylgtpaikagnehlemivvpewgsnvislvdkttnvqllrepetaesfhdtp     60
d1jmma_        1 -------------------------------------------------------qkdla      5

Query         61 tlygipilfppnrisdgtfsfrgrtyhfdinekdkhnhlhgFLYHE--KWNVVTTKQ---    115
d1jmma_        6 dypvklkayedeqasikaalaelekhknedgnltepsaqnlVYDLEpnANLSLTTDGkfl     65

Query        116 ------------------------------------------------------------    116
d1jmma_       66 kasavddafskstskakyvqkilqlddlditnleqsndvassmelygnfgdkagwsttvs    125

Query        116 -----------TDEGVIVETEIDLSELphvqkqfphhaVVRMTYTIKE------------    152
d1jmma_      126 nnsqvkwgsvlLERGQSATATYTNLQN--syyngkkisKIVYKYTVDPkskfqgqkvwlg    183

Query        153 -----------------------NTLFKHATVMNKG-keafpWGIGYHTTFifpaesslf    188
d1jmma_      184 iftdptlgvfasaytgqvekntsIFIKNEFTFYDEDgkpinfDNALLSVAS---------    234

Query        189 sltadqqwelderllptgklmdvpykealhegmdlrhkqlddvflssyqkrggenqaviY    248
d1jmma_      235 ---------------------------------------------------------lnR    237

Query        249 HQHahISIIYKADeqFKHWVVYNA------------------------------------    272
d1jmma_      238 EHN--SIEMAKDY--SGKFVKISGssigekngmiyatdtlnfkqgeggsrwtmyknsqag    293

Query        273 ------dGKQG-YLCPEPYTWvtnavnldlpssltglqvlepgeeTTAKSSITIELN---    322
d1jmma_      294 sgwdssdAPNSwYGAGAIKMS-----------------------gPNNHVTVGATSAtnv    330

Query        323 -----------------------------------------------    323
d1jmma_      331 mpvsdmpvvpgkdntdgkkpniwyslngkiravnvpkvtkekptppv    377

hit structure alignment

FAST alignment (Normalized score: 2.01 Raw score:700.40)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d1jmma_        1 ------------------------------------------------------------      1

Query         61 TLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLH--------------------    100
d1jmma_        1 ----------------------------------------QKDLADYPVKLKAYEDEQAS     20

Query        101 -------------------------GFLYH---EKWNVV---------------------    111
d1jmma_       21 IKAALAELEKHKNEDGNLTEPSAQNLVYDLEPNANLSLTTDGKFLKASAVDDAFSKSTSK     80

Query        112 ----------------------------------------------------TTKQTDEG    119
d1jmma_       81 AKYVQKILQLDDLDITNLEQSNDVASSMELYGNFGDKAGWSTTVSNNSQVKWGSVLLERG    140

Query        120 VIVETEIDLS-ELPHVQKQ---FPHH-AVVRMTYTIKE----------------------    152
d1jmma_      141 QSATATY---TNLQN----SYYNGKKISKIVYKYTV--DPKSKFQGQKVWLGIFTDPTLG    191

Query        153 ---------------NTLFKHATVMNKGKEAFP---------WGIGYHTTFIFPAESSLF    188
d1jmma_      192 VFASAYTGQVEKNTSIFIKNEFTFY--------DEDGKPINFDNALLSV-----------    232

Query        189 SLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVFLSSYQKRGGENQAVIY    248
d1jmma_      233 ------------------------------------------------------------    233

Query        249 HQH------AHISIIYKADEQ---FKHWVVYNADGKQG----------------------    277
d1jmma_      233 ---ASLNREHNSIEMA-----KDYSGKFVK--------ISGSSIGEKNGMIYATDTLNFK    276

Query        278 -----------------------------YLCPEPYTWVTNAVNLDLPSSLTGLQVLEPG    308
d1jmma_      277 QGEGGSRWTMYKNSQAGSGWDSSDAPNSWYGAGAI-------------------------    311

Query        309 EE----TTAKSSITIELN------------------------------------------    322
d1jmma_      312 --KMSGPNNHVTVGAT--SATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPK    367

Query        323 ----------    323
d1jmma_      368 VTKEKPTPPV    377

hit structure alignment

TMalign alignment (TM-score: 0.37 Raw score:118.58)

Query          1 ----------------------------------------------------ANFIEKIT      8
d1jmma_        1 QKDLADYPVKLKAYEDEQASIKAALAELEKHKNEDGNLTEPSAQNLVYDLEPNANLSLTT     60

Query          9 Y--LGT-----------------------------------------PAIKAGN------     19
d1jmma_       61 DGK--FLKASAVDDAFSKSTSKAKYVQKILQLDDLDITNLEQSNDVASSMELYGNFGDKA    118

Query         20 ----------EHLEMIVVPE--WGSNVISLVDKT-------TNVQLLREPETAESFHDTP     60
d1jmma_      119 GWSTTVSNNS-QVKWGSVLLERGQSATATYTNLQNSYYNGKKISKIVY------------    165

Query         61 TLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDEGV    120
d1jmma_      166 ---KYTVDP------------------------------KSK------------------    174

Query        121 IVETEIDLSELPHVQKQFPHHAVVRMTYTIKENTLFKHATVMNKGKEAFPWGIGYHTTFI    180
d1jmma_      175 -----------------F-QGQKVWLGIFT-DPTLGVFASAYTGQ-VEKNTSIFIKNEFT    214

Query        181 --------FPAESSLFSLTAD----------QQWELDERLLP----TGKLMDVPYKEALH    218
d1jmma_      215 FYDEDGKPINFDNALLSVASLNREHNSIEMA----------KDYSG------KFVKISGS    258

Query        219 ----EGMDLRHKQLDDVFLSS--YQ-------KRG-----------GENQ----AVIYHQ    250
d1jmma_      259 SIGE---------KNGMIYATDTLNFKQGEGGSRWTMYKNSQAGSGWDSSDAPN------    303

Query        251 HAHISIIYK-ADEQFKHWVVYNADGKQGYLCPEPYTWVTNAVNLDL-PSSL-----TGLQ    303
d1jmma_      304 --------SW--Y--GAGAIKM--S-GPNNHVTVGATS-ATNVMPVSDMPVVPGKD-NTD    346

Query        304 VLEPGEETTAKSSITIE-------L-N--------    322
d1jmma_      347 GK----KPNIWYSLNGKIRAVNVPKVTKEKPTPPV    377

hit structure alignment

HHsearch alignment (Probability: 0.02 E-value:0.14)

DALI match                                        
Query        284 YTWVTNAVNLDLPSSLTGLQVLEPGEETTAKSS    316
d1jmma_      120 WSTTVSNNSQVKWGS----VLLERGQSATATYT    148

hit structures.

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26: d1g87a2 Endo/exocellulase:cellobiose E-4, C-terminal domain (svm: 0.726)

SCOP Superfamily: Carbohydrate-binding domain | SCOP Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f | SCOP Class: All beta proteins

Consensus: 0.42 Contact: 700
Modified z-scores:
dali:0.95 daliz:0.96 gdtts:0.94 tmscore:0.95 rmsd:0.37 AHM:0.40 LBcontacta:0.96 LBcontactb:0.94 LHM:0.21
id:0.92 blosum:0.67 compass:0.40 pearson:0.95
Scaled scores:
dali:0.78 daliz:0.49 gdtts:0.54 tmscore:0.58 rmsd:0.82 AHM:0.73 LBcontacta:0.67 LBcontactb:0.76 LHM:0.40
id:0.04 blosum:0.12 compass:0.16 pearson:0.16

hit structure alignment

DALI alignment (Z-score: 3.0 Raw score:403.80)

Query          1 anfiekitylgtpaikagnehlemivvpewgsnvislvdkttnvqllrepetaesfhdtp     60
d1g87a2        1 ------------------------------------------------------------      1

Query         61 tlygipilfppnrisdgtfsfrgrtyhfdinekdkhnhlhgflyhekwnvvttkqtdegv    120
d1g87a2        1 ------------------------------------------------------------      1

Query        121 iveteidlselphvqkqfpHHAVVRMTY-TIKENTLFKHATVMNKG---KEAFP-WGIGY    175
d1g87a2        1 -------------------DEVIIKAGLnSTGPNYTEIKAVVYNQTgwpARVTDkISFKY     41

Query        176 HTTFIFpaesSLFSLtadqqwelderllptgklmdvpykealhegmdlrhkqlddvflss    235
d1g87a2       42 FMDLSEivaaGIDPL---------------------------------------------     56

Query        236 yqkrggenqaviyhqhahisIIYKAD----eQFKH-wVVYNadgkqGYLCPEPYTWvtna    290
d1g87a2       57 -------------------sLVTSSYsegknTKVSgvLPWD----vSNNVYYVNVD----     89

Query        291 vnldlpssltGLQVLEPG----EETTAKSSITIELN------------------------    322
d1g87a2       90 ---------lTGENIYPGgqsaCRREVQFRIAAPQGttywnpkndfsydglpttstvntv    140

Query        323 -----------------    323
d1g87a2      141 tnipvydngvkvfgnep    157

hit structure alignment

FAST alignment (Normalized score: 2.82 Raw score:634.30)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d1g87a2        1 ------------------------------------------------------------      1

Query         61 TLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDEGV    120
d1g87a2        1 ------------------------------------------------------------      1

Query        121 IVETEIDLSELPHVQKQFPH-HAVVRMT-YTIKENTLFKHATVMNKG----KEAF-PWGI    173
d1g87a2        1 --------------------DEVIIKAGLNSTGPNYTEIKAVVYNQ-TGWPARVTDKISF     39

Query        174 GYHTTFIFPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVFL    233
d1g87a2       40 --KYFMDL----------------------------------------------------     45

Query        234 SSYQKRGGENQAVIY--HQHAHI---SIIYKADEQF------KHWV-VYNADGKQGYLCP    281
d1g87a2       46 ---------------SEIVAAGIDPLSLVTSS----YSEGKNTKVSGVLPWDVSNNVYYV     86

Query        282 EPYTWVTNAVNLDLPSSLT-GLQVLEPG------EETTAKSSITIELN------------    322
d1g87a2       87 NVD----------------LTGENIY--PGGQSACRREVQFRIA----APQGTTYWNPKN    124

Query        323 ---------------------------------    323
d1g87a2      125 DFSYDGLPTTSTVNTVTNIPVYDNGVKVFGNEP    157

hit structure alignment

TMalign alignment (TM-score: 0.26 Raw score:84.46)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d1g87a2        1 ------------------------------------------------------------      1

Query         61 TLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDEGV    120
d1g87a2        1 ------------------------------------------------------------      1

Query        121 IVETEIDLSELPHVQKQFPHHAVVRMTYTIKEN-TLFKHATVMNKG---KEAF-PWGIGY    175
d1g87a2        1 --------D-----------EVIIKAGLNSTGPNYTEIKAVVYNQTGWPARVTDKISFKY     41

Query        176 HTTFIFPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVFLSS    235
d1g87a2       42 FMDLSEIVAAGIDPL---------------------------------------------     56

Query        236 YQKRGGENQAVIYHQHAHISIIYKAD------EQFKHWVVY-NADGKQGYLCPEPYTWVT    288
d1g87a2       57 ---------SL-----------VTSSYSEGKNTKVSGVLPWDVS-----NNVYYVNVD--     89

Query        289 NAVNLDLPSSLTGLQV-LEPG---E-ETTAKSSITI-ELN--------------------    322
d1g87a2       90 ------------LTGENIYPGGQSACRREVQFRIAAPQGTTYWNPKNDFSYDGLPTTSTV    137

Query        323 --------------------    323
d1g87a2      138 NTVTNIPVYDNGVKVFGNEP    157

hit structure alignment

HHsearch alignment (Probability: 0.04 E-value:0.07)

DALI match       ************* ......... .........  
Query        151 KENTLFKHATVMN-KGKEAFPWG-IGYHTTFIFPA    183
d1g87a2       13 GPNYTEIKAVVYNQTGWPARVTDKISFKYFMDLSE     47

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27: d1kyfa1 Alpha-adaptin AP2 ear domain, N-terminal subdomain (svm: 0.882)

SCOP Superfamily: Clathrin adaptor appendage domain | SCOP Fold: Immunoglobulin-like beta-sandwich | SCOP Class: All beta proteins

Consensus: 0.48 Contact: 606
Modified z-scores:
dali:0.96 daliz:0.97 gdtts:0.94 tmscore:0.95 rmsd:0.34 AHM:0.37 LBcontacta:0.94 LBcontactb:0.93 LHM:0.51
id:0.83 blosum:0.34 compass:0.58 pearson:0.97
Scaled scores:
dali:0.84 daliz:0.63 gdtts:0.61 tmscore:0.62 rmsd:0.79 AHM:0.72 LBcontacta:0.69 LBcontactb:0.82 LHM:0.10
id:0.02 blosum:0.06 compass:0.21 pearson:0.21

hit structure alignment

DALI alignment (Z-score: 3.9 Raw score:438.90)

Query          1 anfiekitYLGTpaikagnehlemivvpewgsnvislvdkttnvqllrepetaesfhdtp     60
d1kyfa1        1 --------GSPG------------------------------------------------      4

Query         61 tlygipilfppnrisdgtfsfrgrtyhfdinekdkhnhlhgflyHEKWnvVTTKqtdegv    120
d1kyfa1        5 ---------------------------------------irlgsSEDNfaRFVC------     19

Query        121 IVETE-IDLSelphvqkqfphHAVVRMTYTIKENTLFKHATVMNKGKEAFP-WGIGYHTT    178
d1kyfa1       20 KNNGVlFENQ-----------LLQIGLKSEFRQNLGRMFIFYGNKTSTQFLnFTPTLICA     68

Query        179 FIfpaesslfsltadqqwelderllptgklmdvpykealhegmdlrhkqlddvflssyqk    238
d1kyfa1       69 DD----------------------------------------------------------     70

Query        239 rggenqaviyhqhahiSIIYKADEQfkhwvvynadgkqgylcpepytwvtnavnldlpss    298
d1kyfa1       71 -------------lqtNLNLQTKPV-----------------------------------     82

Query        299 ltgLQVLEPGEETTAKSSITIEL------------------------------n    322
d1kyfa1       83 ---DPTVDGGAQVQQVVNIECISdfteapvlniqfryggtfqnvsvklpitlnk    133

hit structure alignment

FAST alignment (Normalized score: 3.04 Raw score:629.60)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d1kyfa1        1 ------------------------------------------------------------      1

Query         61 TLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLH----------GFLYHEKWNV    110
d1kyfa1        1 ----------------------------------------GSPGIRLGSSEDNF------     14

Query        111 VTTKQTDEGVI------VETEIDLSELPHVQKQFP----HHAVVRMTYTIKENTLFKHAT    160
d1kyfa1       15 -----------ARFVCKNNGV--------------LFENQLLQIGLKSEFRQNLGRMFIF     49

Query        161 VMNKGKEA-FPWGIGYHTTFIFPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHE    219
d1kyfa1       50 YGNKTSTQFLNFTPTLIC------------------------------------------     67

Query        220 GMDLRHKQLDDVFLSSYQKRGGENQAVIYHQHAH-----ISIIYKADEQFKHWVVYNADG    274
d1kyfa1       68 ----------------------------------ADDLQTNLNLQTK-------------     80

Query        275 KQGYLCPEPYTWVTNAVNLDLPSSLTGL---QVLEPGEETTAKSSITIELN---------    322
d1kyfa1       81 ----------------------------PVDPTVDGGAQVQQVVNIECI--SDFTEAPVL    110

Query        323 -----------------------    323
d1kyfa1      111 NIQFRYGGTFQNVSVKLPITLNK    133

hit structure alignment

TMalign alignment (TM-score: 0.18 Raw score:57.41)

Query          1 ------------------------------------------------------ANFIEK      6
d1kyfa1        1 GSPGIRLGSSEDNFARFVCKNNGVLFENQLLQIGLKSEFRQNLGRMFIFYGNKT------     54

Query          7 ITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTPTLYGIP     66
d1kyfa1       55 -----------------------------------S-TQFL----------------NFT     62

Query         67 ILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDEGVIVETEI    126
d1kyfa1       63 PTLIC-------A------DD---------------------------------------     70

Query        127 DLSELPHVQKQFP-HHAVVRMTY---TIKENTLFKHATVMNKGKEAF--PWGIGYHTTFI    180
d1kyfa1       71 ----------LQTNLNLQTKPVDPTV---DGGAQVQQVVNIECISDFTEAPVLNIQFRY-    116

Query        181 FPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVFLSSYQKRG    240
d1kyfa1      117 G-----------------------------------------------------------    117

Query        241 GENQAVIYHQHAHISIIYKADEQFKHWVVYNADGKQGYLCPEPYTWVTNAVNLDLPSSLT    300
d1kyfa1      118 -------------------------------------GTFQNVSVK--------------    126

Query        301 GLQVLEPGEETTAKSSITIELN    322
d1kyfa1      127 -LPITLN-K-------------    133

hit structure alignment

HHsearch alignment (Probability: 0.06 E-value:0.06)

DALI match       ****************************** *****
Query        141 HAVVRMTYTIKENTLFKHATVMNKGKEAFP-WGIGY    175
d1kyfa1       30 LLQIGLKSEFRQNLGRMFIFYGNKTSTQFLNFTPTL     65

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28: d1nbca_ Cellusomal scaffolding protein A, scaffoldin (cs: 2.200)

SCOP Superfamily: Carbohydrate-binding domain | SCOP Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f | SCOP Class: All beta proteins

Consensus: 0.35 Contact: 656
Modified z-scores:
dali:0.94 daliz:0.94 gdtts:0.89 tmscore:0.92 rmsd:0.50 AHM:0.64 LBcontacta:0.94 LBcontactb:0.94 LHM:0.42
id:0.99 blosum:0.83 compass:0.59 pearson:0.99
Scaled scores:
dali:0.77 daliz:0.45 gdtts:0.45 tmscore:0.48 rmsd:0.76 AHM:0.61 LBcontacta:0.62 LBcontactb:0.76 LHM:0.15
id:0.10 blosum:0.15 compass:0.24 pearson:0.26

hit structure alignment

DALI alignment (Z-score: 2.4 Raw score:348.80)

Query          1 anfiekitylgtpaikagnehlemivvpewgsnvislvdkttnvqllrepetaesfhdtp     60
d1nbca_        1 ------------------------------------------------------------      1

Query         61 tlygipilfppnrisdgtfsfrgrtyhfdinekdkhnhlhgflyhekwnvvttkqtdegv    120
d1nbca_        1 ------------------------------------------------------------      1

Query        121 iveteidlselphvqkqfphHAVVRMTYTI---kENTLFKHATVMNKGKEAFPW--GIGY    175
d1nbca_        1 --------------------NLKVEFYNSNpsdtTNSINPQFKVTNTGSSAIDLskLTLR     40

Query        176 HTTFIFpaesslfsltadqqwelderllptgklmdvpykealhegmdlrhkqlddvflss    235
d1nbca_       41 YYYTVD------------------------------------------------------     46

Query        236 yqkrggenqaviyhqhahISIIYKAD---------------EQFKhWVVYNADGKQgylc    280
d1nbca_       47 ----------------gqKDQTFWCDhaaiigsngsyngitSNVKgTFVKMSSSTNnadt     90

Query        281 pepYTWVtnavnldlpssltgLQVLEPGEETTAKSSITIEL-------------------    321
d1nbca_       91 yleISFT--------------GGTLEPGAHVQIQGRFAKNDwsnytqsndysfksasqfv    136

Query        322 ------------------n    322
d1nbca_      137 ewdqvtaylngvlvwgkep    155

hit structure alignment

FAST alignment (Normalized score: 2.90 Raw score:646.70)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d1nbca_        1 ------------------------------------------------------------      1

Query         61 TLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDEGV    120
d1nbca_        1 ------------------------------------------------------------      1

Query        121 IVETEIDLSELPHVQKQFPHHAVVRMTYTIK---ENTLFKHATVMNKGKEAF---PWGIG    174
d1nbca_        1 --------------------NLKVEFYNSNPSDTTNSINPQFKVTNTGSSAIDLSKLTLR     40

Query        175 YHTTFIFPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVFLS    234
d1nbca_       41 YYYTV-------------------------------------------------------     45

Query        235 SYQKRGGENQAVIYHQHAH---ISIIYKADEQF-------------------KHWVVYNA    272
d1nbca_       46 -------------------DGQKDQTFWCD---HAAIIGSNGSYNGITSNVKGTFVKM--     81

Query        273 DGKQGYL-------CPEPYTWVTNAVNLDLPSSLT---GLQVLEPGEETTAKSSITIELN    322
d1nbca_       82 -------SSSTNNADTYLE----------------ISFTGGTLEPGAHVQIQGRFAK---    115

Query        323 ----------------------------------------    323
d1nbca_      116 NDWSNYTQSNDYSFKSASQFVEWDQVTAYLNGVLVWGKEP    155

hit structure alignment

TMalign alignment (TM-score: 0.20 Raw score:63.23)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d1nbca_        1 ------------------------------------------------------------      1

Query         61 TLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDEGV    120
d1nbca_        1 ----------------------------------------------------------NL      2

Query        121 IVETEIDLSELPHVQKQFPHHAVVRMTYTI-KENTL-F--KHATVMNKGKEAF-PWGIG-    174
d1nbca_        3 KVEFYNSN-PSD-TT--NS--INPQFKVTNTGSSAIDLSKLTLRYYYTVDGQKDQTFWCD     56

Query        175 YHTTFI---FPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDV    231
d1nbca_       57 HAAIIGSNG---------------------------------------------------     65

Query        232 FLSSYQKRGGENQAVIYHQHAHISIIYKADEQFKHWVVYNADGKQGYLCPE-PYTWVTNA    290
d1nbca_       66 ------------------------S---------------------YNGITSNVKG----     76

Query        291 VNLDLPSSLTGLQVLE-------PGEETTAKS--SITIE---------------------    320
d1nbca_       77 ------------TFVKMSSSTNNADTYLEISFTGGTLEPGAHVQIQGRFAKNDWSNYTQS    124

Query        321 -------------------------------LN    322
d1nbca_      125 NDYSFKSASQFVEWDQVTAYLNGVLVWGKEP--    155

hit structure alignment

HHsearch alignment (Probability: 0.06 E-value:0.04)

DALI match        ********************. .........      
Query        151 KENTLFKHATVMNKGKEAFPWG-IGYHTTFIFPAESSL    187
d1nbca_       14 TTNSINPQFKVTNTGSSAIDLSKLTLRYYYTVDGQKDQ     51

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29: d1gyva_ Gamma1-adaptin domain (cs: 2.193)

SCOP Superfamily: Clathrin adaptor appendage domain | SCOP Fold: Immunoglobulin-like beta-sandwich | SCOP Class: All beta proteins

Consensus: 0.52 Contact: 606
Modified z-scores:
dali:0.95 daliz:0.97 gdtts:0.93 tmscore:0.94 rmsd:0.33 AHM:0.37 LBcontacta:0.93 LBcontactb:0.91 LHM:0.46
id:0.75 blosum:0.42 compass:0.77 pearson:0.99
Scaled scores:
dali:0.83 daliz:0.62 gdtts:0.60 tmscore:0.63 rmsd:0.79 AHM:0.70 LBcontacta:0.72 LBcontactb:0.81 LHM:0.05
id:0.00 blosum:0.05 compass:0.28 pearson:0.29

hit structure alignment

DALI alignment (Z-score: 3.3 Raw score:386.80)

Query          1 anfiekitylgtpaikagnehlemivvpewgsnvislvdkttnvqllrepetaesfhdtp     60
d1gyva_        1 ------------------------------------------------------------      1

Query         61 tlygipilfppnrisdgtfsfrgrtyhfdinekdkhnhlhgflyhekwnvvttkqtdegV    120
d1gyva_        1 -----------------------------------------------------------M      1

Query        121 IVETE-IDLSelphvqkqfphHAVVRMTYTIK---ENTLFKHATVMNKGKEAFP-WGIGY    175
d1gyva_        2 IPSITaYSKN-----------GLKIEFTFERSntnPSVTVITIQASNSTELDMTdFVFQA     50

Query        176 HTTFifpaesslfsltadqqwelderllptgklmdvpykealhegmdlrhkqlddvflss    235
d1gyva_       51 AVPK--------------------------------------------------------     54

Query        236 yqkrggenqaviyhqhahiSIIYKADEQfkhwvvynadgkqgylcpepytwvtnavnldl    295
d1gyva_       55 -------------------TFQLQELSP--------------------------------     63

Query        296 pssltglQVLEPGE--ETTAKSSITIEL--------------------------------    321
d1gyva_       64 -----ssSVVPAFNtgTITQVIKVLNPQkqqlrmrikltynhkgsamqdlaevnnfppqs    118

Query        322 -n    322
d1gyva_      119 wq    120

hit structure alignment

FAST alignment (Normalized score: 3.22 Raw score:632.80)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d1gyva_        1 ------------------------------------------------------------      1

Query         61 TLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDEGV    120
d1gyva_        1 -----------------------------------------------------------M      1

Query        121 IVETEIDLSELPHVQKQFP-----HHAVVRMTYTIK---ENTLFKHATVMNKGKEA-FPW    171
d1gyva_        2 IPSI---------------TAYSKNGLKIEFTFERSNTNPSVTVITIQASNSTELDMTDF     46

Query        172 GIGYHTTFIFPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDV    231
d1gyva_       47 VFQAAV------------------------------------------------------     52

Query        232 FLSSYQKRGGENQAVIYHQHAHI--SIIYKADEQFKHWVVYNADGKQGYLCPEPYTWVTN    289
d1gyva_       53 -----------------------PKTFQLQEL----------------------------     61

Query        290 AVNLDLPSSLT--GLQVLEP--GEETTAKSSITIELN-----------------------    322
d1gyva_       62 -----------SPSSSVVPAFNTGTITQVIKVLN---PQKQQLRMRIKLTYNHKGSAMQD    107

Query        323 -------------    323
d1gyva_      108 LAEVNNFPPQSWQ    120

hit structure alignment

TMalign alignment (TM-score: 0.19 Raw score:60.42)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d1gyva_        1 ------M-----------------IPS-----I---------------------------      5

Query         61 TLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDEGV    120
d1gyva_        6 -----TAYSK-----------------N------------GLKI-E-FTFERSNTNP-SV     28

Query        121 IVETEIDLSELPHVQKQFPHHAVV-----------------------------R-MTYTI    150
d1gyva_       29 TVITIQAS--N-ST-ELDMTDFVFQAAVPKTFQLQELSPSSSVVPAFNTGTITQVIKVLN     84

Query        151 KENT-LFKHATVMNK--GKEAFPWGIGYHTTF----IFPAESSLFSLTADQQWELDERLL    203
d1gyva_       85 PQKQQLRMRIKLTYNHK--GSAMQDLAEVNNFPPQS------------------------    118

Query        204 PTGKLMDVPYKEALHEGMDLRHKQLDDVFLSSYQKRGGENQAVIYHQHAHISIIYKADEQ    263
d1gyva_      119 ------------------------------------------------------------    119

Query        264 FKHWVVYNADGKQGYLCPEPYTWVTNAVNLDLPSSLTGLQVLEPGEETTAKSSITIELN    322
d1gyva_      119 ------------------------------------------------------WQ---    120

hit structure alignment

HHsearch alignment (Probability: 0.06 E-value:0.04)

DALI match                                   
Query        136 KQFPHHAVVRMTYTIKENTLFKHATVMN    163
d1gyva_       86 QKQQLRMRIKLTYNHKGSAMQDLAEVNN    113

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30: d1e54a_ Porin (cs: 2.138)

SCOP Superfamily: Porins | SCOP Fold: Transmembrane beta-barrels | SCOP Class: Membrane and cell surface proteins and peptides

Consensus: 0.00 Contact: 507
Modified z-scores:
dali:0.92 daliz:0.91 gdtts:0.94 tmscore:0.97 rmsd:0.42 AHM:0.42 LBcontacta:0.89 LBcontactb:0.92 LHM:0.30
id:0.55 blosum:0.01 compass:0.21 pearson:0.47
Scaled scores:
dali:0.75 daliz:0.45 gdtts:0.48 tmscore:0.55 rmsd:0.79 AHM:0.74 LBcontacta:0.45 LBcontactb:0.64 LHM:0.31
id:-0.02 blosum:-0.05 compass:-0.02 pearson:-0.01

hit structure alignment

DALI alignment (Z-score: 2.0 Raw score:438.90)

Query          1 anfiekitylgtpaikagnehlemivvpewgsnvislvdkttnvqLLREPE---------     51
d1e54a_        1 ------------xssvtlfgivdtnvayvnkdaagdsryglgtsgASTSRLglrgtedlg     48

Query         52 -------TAES-------------FHDT--------------------------------     59
d1e54a_       49 gglkagfWLEGeifgddgnasgfnFKRRstvslsgnfgevrlgrdlvptsqkltsydlfs    108

Query         60 --ptlygipILFPpnrisdgtfsfrgrtyhfdinekdkhnhlhGFLYHEK----------    107
d1e54a_      109 atgigpfmgFRNW-----------------------aagqgadDNGIRANnlisyytpnf    145

Query        108 --------------------------wNVVTTKQTDEGVIVETEIDLSelphVQKQ-fPH    140
d1e54a_      146 ggfnagfgyafdekqtigtadsvgryiGGYVAYDNGPLSASLGLAQQK----TAVGglAT    201

Query        141 HAVVRMTYTIKE----NTLFKHATVMNKGK-EAFPWGigyhttfifpaesslfsltadqq    195
d1e54a_      202 DRDEITLGASYNfgvaKLSGLLQQTKFKRDiGGDIKT-----------------------    238

Query        196 welderllptgklmdvpykealhegmdlrhkqlddvflssyqkrggenqaviyHQHAHIS    255
d1e54a_      239 -------------------------------------------nsymlgasapVGGVGEV    255

Query        256 IIYKAD--------EQFK------------------------------HWVVYNAdgkqg    277
d1e54a_      256 KLQYALydqkaidsKAHQitlgyvhnlskrtalygnlaflknkdastlGLQAKGV-----    310

Query        278 ylcpepytwvtnavnldlPSSLtglqvlepgeettakssitieln    322
d1e54a_      311 -------------yaggvQAGE----------sqtgvqvgirhaf    332

hit structure alignment

FAST alignment (Normalized score: 1.33 Raw score:433.50)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d1e54a_        1 ------------------------------------------------------------      1

Query         61 TLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNV----------    110
d1e54a_        1 --------------------------------------------------XSSVTLFGIV     10

Query        111 ------------------------------------------------------------    111
d1e54a_       11 DTNVAYVNKDAAGDSRYGLGTSGASTSRLGLRGTEDLGGGLKAGFWLEGEIFGDDGNASG     70

Query        111 ------------------------------------------------------------    111
d1e54a_       71 FNFKRRSTVSLSGNFGEVRLGRDLVPTSQKLTSYDLFSATGIGPFMGFRNWAAGQGADDN    130

Query        111 ------------------------------------------VTTKQTD------EGVIV    122
d1e54a_      131 GIRANNLISYYTPNFGGFNAGFGYAFDEKQTIGTADSVGRYIGGYVA--YDNGPLSASLG    188

Query        123 ETEIDLSELPHVQKQ---FPHHAVVRMTYTIKE----------NTLFKHATVMNKGKE-A    168
d1e54a_      189 LAQQK----------TAVGGLATDRDEITLG--ASYNFGVAKLSGLLQQTKFKR----DI    232

Query        169 FPWGIGYHTTFIFPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQL    228
d1e54a_      233 GGDIKT------------------------------------------------------    238

Query        229 DDVFLSSYQKRGGENQ---AVIYHQH-------AHISIIYKADEQFKHWVVYNADGKQGY    278
d1e54a_      239 ----------------NSYMLGAS--APVGGVGEVKLQYAL-------------------    261

Query        279 LCPEPYTWVTNAVNLDLPSSLTGLQVLEPGEETTAKSSITIELN----------------    322
d1e54a_      262 ---YDQKA------------------------------------IDSKAHQITLGYVHNL    282

Query        323 --------------------------------------------------    323
d1e54a_      283 SKRTALYGNLAFLKNKDASTLGLQAKGVYAGGVQAGESQTGVQVGIRHAF    332

hit structure alignment

TMalign alignment (TM-score: 0.34 Raw score:109.72)

Query          1 -------------------------------------------------ANFIEKITYL-     10
d1e54a_        1 XSSVTLFGIVDTNVAYVNKDAAGDSRYGLGTSGASTSRLGLRGTEDLGG--GLKAGFWLE     58

Query         11 ------------------GTPAIKA---GNEHLEMIVVPEWGS--NVISLVD-KTTNVQL     46
d1e54a_       59 GEIFGDDGNASGFNFKRRSTVSLSGNFG------EVRLGRDLVPTSQKLTSYD------L    106

Query         47 LREPETAESFHDTPTLY--GIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLY    104
d1e54a_      107 FS------------ATGIGPFMGF--RNWAA-G----------QG-A-------DDNGIR    133

Query        105 HEKWNVVTTKQTDEGVIVETEIDLSELPHVQKQ-FPHH-AVVRMTYTIKE--NTLFKHAT    160
d1e54a_      134 ANNLISYYTPNFGGFNAGFGYAF--DEKQ-TIGTADSVGRYIGGYVAYDNGPLSASLGLA    190

Query        161 VMN-----KGKEAFPWGI--------------------G-------------Y-HT-TF-    179
d1e54a_      191 QQKTAVGG---LATDRDEITLGASYNFGVAKLSGLLQQTKFKRDIGGDIKTNSY-ML-GA    245

Query        180 IF-P----AESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDL-----------    223
d1e54a_      246 -SAPVGGV-GEVKLQYAL-YDQ------KAIDSKA-H--Q--I--TLGYVHNLSKRTALY    289

Query        224 RHKQLDDVF--LSSYQKRGGENQAVIYHQHAHISIIYKADEQFKH-WVVYNA--------    272
d1e54a_      290 GNLAFLKNKDA---------------------------------ST-LGLQAKGVYAGGV    315

Query        273 --------DGKQGY---LCPEPYTWVTNAVNLDLPSSLTGLQVLEPGEETTAKSSITIEL    321
d1e54a_      316 QAGESQTGVQVGIRHAF-------------------------------------------    332

Query        322 N    322
d1e54a_      333 -    333

hit structure alignment

HHsearch alignment (Probability: 0.07 E-value:1.00)

DALI match                                                                   
Query         76 DGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDEGVIVETEIDLSELPHVQ    135
d1e54a_      209 GASYNFGVAKLSGLLQQTKFKRDIGGDIKTNSYMLGASAPVGGVGEVKLQYALYD-QKAI    267

DALI match                                                                   
Query        136 KQFPHHAVVRMTYTIKENTLFKHATVM----------------------NKGKEAFPWGI    173
d1e54a_      268 DSKAHQITLGYVHNLSKRT-ALYGNLAFLKNKDASTLGLQAKGVYAGGVQAGESQTGVQV    326

DALI match             
Query        174 GYHTTF    179
d1e54a_      327 GIRHAF    332

hit structures.

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31: d1uynx_ Translocator domain of NalP (cs: 2.120)

SCOP Superfamily: Autotransporter | SCOP Fold: Transmembrane beta-barrels | SCOP Class: Membrane and cell surface proteins and peptides

Consensus: 0.00 Contact: 467
Modified z-scores:
dali:0.90 daliz:0.91 gdtts:0.92 tmscore:0.94 rmsd:0.41 AHM:0.47 LBcontacta:0.91 LBcontactb:0.91 LHM:0.70
id:0.76 blosum:0.06 compass:0.44 pearson:0.17
Scaled scores:
dali:0.80 daliz:0.51 gdtts:0.50 tmscore:0.54 rmsd:0.80 AHM:0.68 LBcontacta:0.58 LBcontactb:0.72 LHM:0.07
id:0.01 blosum:-0.02 compass:-0.05 pearson:-0.11

hit structure alignment

DALI alignment (Z-score: 2.4 Raw score:391.70)

Query          1 anfiekitylgtpaikagnehlemivvpewgsNVISLVD---------------------     39
d1uynx_        1 -----aatvyadstaahadmqgrrlkavsdglDHNGTGLrviaqtqqdggtweqggvegk     55

Query         40 ----kttnvqLLRE-------------------------------------PETAEsfHD     58
d1uynx_       56 mrgstqtvgiAAKTgenttaaatlgmgrstwsensanaktdsislfagirhDAGDI--GY    113

Query         59 TPT-----------------------------------------lygipilfppNRIS--     75
d1uynx_      114 LKGlfsygryknsisrstgadehaegsvngtlmqlgalggvnvptgdltvegglRYDLlk    173

Query         76 -------------------DGTFsfrgrtyhfdinekdkhnhlhgflyheKWNVVTTKQt    116
d1uynx_      174 qdafaekgsalgwsgnsltEGTL----------------------vglagLKLSQPLSD-    210

Query        117 degVIVETEIDLSelphVQKQ----------fPHHAVVRMTYTIKE-NTLFKHATVMNKG    165
d1uynx_      211 ---KAVLFATAGV----ERDLngrdytvtgphTRLVAGLGADVEFGnGWNGLARYSYAGS    263

Query        166 KEAfpwgigyhttfifpaesslfsltadqqwelderllptgklmdvpykealhegmdlrh    225
d1uynx_      264 KQY---------------------------------------------------------    266

Query        226 kqlddvflssyqkrggenqaviyhqhahisiiykadeqfkhwvvynadgkqgylcpepyt    285
d1uynx_      267 ------------------------------------------------------------    267

Query        286 wvtnavnldlpssltglqvlepGEETTAKSSITIEln    322
d1uynx_      267 ----------------------GNHSGRVGVGYRF--    279

hit structure alignment

FAST alignment (Normalized score: 1.66 Raw score:497.90)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d1uynx_        1 ------------------------------------------------------------      1

Query         61 TLYGIPILFPPNRISD--------------------------------------------     76
d1uynx_        1 ----------------AATVYADSTAAHADMQGRRLKAVSDGLDHNGTGLRVIAQTQQDG     44

Query         77 GTFSFRGRTYHFDINEKDKHNHLHGFLYH-------------------------------    105
d1uynx_       45 GTWEQGGVEGK------------------MRGSTQTVGIAAKTGENTTAAATLGMGRSTW     86

Query        106 ------------EKWNVVTTKQ-TDEGVIVETEIDLSELPHVQKQF--------------    138
d1uynx_       87 SENSANAKTDSISLFA-GIRHDAGDIGYLKGLFSY-----------GRYKNSISRSTGAD    134

Query        139 -------PHHAVVRMTYTIKE--------NTLFKHATVMNKGKEAFPWGIGYHTTFIFPA    183
d1uynx_      135 EHAEGSVNGTLMQLGALGG--VNVPTGDLTVEGGLRYDLLK-------------------    173

Query        184 ESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVFLSSYQKRGGEN    243
d1uynx_      174 ------------------------------------------------------------    174

Query        244 QAVIYHQHAHISIIYKADEQFKHWVVYNADGKQGYLCPEPYTWVTNAVNLDLPSSLTGLQ    303
d1uynx_      174 ------------------------------------------------------------    174

Query        304 VLE-----------------PGEETTAKSSITIELN------------------------    322
d1uynx_      174 ---QDAFAEKGSALGWSGNSLTEGTLVGLAGLKL--SQPLSDKAVLFATAGVERDLNGRD    228

Query        323 ---------------------------------------------------    323
d1uynx_      229 YTVTGPHTRLVAGLGADVEFGNGWNGLARYSYAGSKQYGNHSGRVGVGYRF    279

hit structure alignment

TMalign alignment (TM-score: 0.26 Raw score:83.07)

Query          1 -ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDT     59
d1uynx_        1 AATVYA----------DST----AAHAD----MQGR------------------------     18

Query         60 PTLYGIPIL-FPPNRISDGTF-----------------------------SFRGRTYHFD     89
d1uynx_       19 ----RLKAVSDGLDHNGTGLRVIAQTQQDGGTWEQGGVEGKMRGSTQTVG--------IA     66

Query         90 INEKDKHNHLHGFLYHEKWNVVTTKQTDEGVIVETEI-----------------------    126
d1uynx_       67 AKTGEN-TTAA-AT--L-GMGRSTWSENSANAKTDSISLFAGIRHDAGDIGYLKGLFSYG    121

Query        127 -------------------------DLSELPHVQKQFPHHAVVRMTYTIKENTLFKHATV    161
d1uynx_      122 RYKNSISRSTGADEHAEGSVNGTLM-----------------------------------    146

Query        162 MNKGKEAFPWGIGYHTTFI---FPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEAL-    217
d1uynx_      147 --------------QLGALGGV--------------NVP---------TGDLT-----VE    164

Query        218 HEGMDL---------------------------------RHKQLDDVFLSS-YQ------    237
d1uynx_      165 ----GGLRYDLLKQDAFAEKGSALGWSGNSLTEGTLVGL-----AGLKLSQP-LSDKAVL    214

Query        238 -KRGGENQAVIYHQHA-------HISIIYKADEQFKHWVVYNADGKQGYLCPEPYTWVTN    289
d1uynx_      215 F----ATAGVERDLNGRDYTVTGPHTRLVAG-L-G--------------------AD---    245

Query        290 AVNL--DLPSSLTGLQVLEPGEETTAKSSITIEL--------------N    322
d1uynx_      246 VEFGNG--------WNGL-----A-RYSYAGSKQYGNHSGRVGVGYRF-    279

hit structure alignment

HHsearch alignment (Probability: 0.04 E-value:0.28)

DALI match       ...                            .  .........                 
Query         73 RISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDEGVIVETEIDLSELP    132
d1uynx_      171 LLKQDAFAEKGSALGWSGNSLTEGTLVGLAGLKLSQPLSDKAVLFATAGVERDLNGRDYT    230

DALI match            ............. *..........
Query        133 HVQKQFPHHAVVRMTYTIKENTLFKHATVM    162
d1uynx_      231 VTGPHTRLVAGLGADVEF-GNGWNGLARYS    259

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32: d7ahla_ Alpha-hemolysin (svm: 0.876)

SCOP Superfamily: Leukocidin-like | SCOP Fold: Leukocidin-like | SCOP Class: Membrane and cell surface proteins and peptides

Consensus: 0.00 Contact: 793
Modified z-scores:
dali:0.97 daliz:0.97 gdtts:0.96 tmscore:0.97 rmsd:0.48 AHM:0.54 LBcontacta:0.96 LBcontactb:0.94 LHM:0.57
id:0.82 blosum:0.17 compass:0.36 pearson:0.94
Scaled scores:
dali:0.79 daliz:0.51 gdtts:0.54 tmscore:0.59 rmsd:0.71 AHM:0.58 LBcontacta:0.64 LBcontactb:0.74 LHM:-0.03
id:0.00 blosum:0.04 compass:0.12 pearson:0.14

hit structure alignment

DALI alignment (Z-score: 3.0 Raw score:493.20)

Query          1 anfiekitylgtpaikAGNEhlemivvpewgsnvislvdkttnvqllrepetaesfhdtp     60
d7ahla_        1 ----adsdiniktgttDIGS----------------------------------------     16

Query         61 tlygipilfppnrisdgtfsfrgrtyhfdinekdkhnhlhgflyhekwnvvttkqtDEGV    120
d7ahla_       17 -------------------------------------------------------nTTVK     21

Query        121 IVETEIDLSelphvqkqfPHHAVVRMTYTIKE------NTLFKHATVMNKGKE-------    167
d7ahla_       22 TGDLVTYDK---------ENGMHKKVFYSFIDdknhnkKLLVIRTKGTIAGQYrvyseeg     72

Query        168 --------AFPWGIGYHTTFIfpaesslfsltadqqwelderllptgklmdvpykealhe    219
d7ahla_       73 anksglawPSAFKVQLQLPDN---------------------------------------     93

Query        220 gmdlrhkqlddvflssyqkrggenqaviyhqhahiSIIY-KADEQ---------------    263
d7ahla_       94 ----------------------------------eVAQIsDYYPRnsidtkeymstltyg    119

Query        264 -------------------------------------FKHWVvynadgkqgylcPEPYTw    286
d7ahla_      120 fngnvtgddtgkiggliganvsightlkyvqpdfktiLESPT-----------dKKVGW-    167

Query        287 vtnavnldlpssltGLQV------------------------------------------    304
d7ahla_      168 --------------KVIFnnmvnqnwgpydrdswnpvygnqlfmktrngsmkaadnfldp    213

Query        305 ------lePGEETTAKSSITIELN------------------------------------    322
d7ahla_      214 nkassllsSGFSPDFATVITMDRKaskqqtnidviyervrddyqlhwtstnwkgtntkdk    273

Query        323 --------------------    323
d7ahla_      274 wtdrsserykidwekeemtn    293

hit structure alignment

FAST alignment (Normalized score: 1.41 Raw score:433.90)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d7ahla_        1 ------------------------------------------------------------      1

Query         61 TLYGIPILFPPNRISDGTFSFRGRTYHFDINE----KDKHNHLHGFLYH-----------    105
d7ahla_        1 --------------------------------ADSDINIK---------TGTTDIGSNTT     19

Query        106 EKWNVVTTKQT---DEGVIVETEIDLSELPHVQ---KQFPHHAVVRMTYTIK--------    151
d7ahla_       20 VKTGD-LVTY-DKENGMHKKVFYSF--------IDDKNHNKKLLVIRTKGTIAGQYRVYS     69

Query        152 -----------ENTLFKHATVMNKGKEAFPWGIGYHTTFIFPAESSLFSLTADQQWELDE    200
d7ahla_       70 EEGANKSGLAWPSAFKVQLQ----------------------------------------     89

Query        201 RLLPTGKLMDVPYKEALHEGMDLRHKQLDDVFLSSYQKRGGENQAVIYHQHAHI------    254
d7ahla_       90 ------------------------------------------------------LPDNEV     95

Query        255 --------------------------------------------------------SIIY    258
d7ahla_       96 AQISDYYPRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFKT    155

Query        259 KADEQFKHWVVYNADGKQGYLCPEPYTWVTNAVNLDLPSSLTGLQVLEPGE---ETTAKS    315
d7ahla_      156 ILE------------------------------------------------SPTDKKVGW    167

Query        316 SITIELN-----------------------------------------------------    322
d7ahla_      168 KVIFN--NMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAADNFLDPNKASSLLSSGFS    225

Query        323 ------------------------------------------------------------    323
d7ahla_      226 PDFATVITMDRKASKQQTNIDVIYERVRDDYQLHWTSTNWKGTNTKDKWTDRSSERYKID    285

Query        323 --------    323
d7ahla_      286 WEKEEMTN    293

hit structure alignment

TMalign alignment (TM-score: 0.20 Raw score:64.99)

Query          1 ---------------------ANFIEKITYLGTPAIKAGN------------EHLEMIVV     27
d7ahla_        1 ADSDINIKTGTTDIGSNTTVKTGDLVTYDKENGMHKKVFYSFIDDKNHNKKLLVIRTKGT     60

Query         28 PEWG----------------S-NVISLVDK------TT----------------------     42
d7ahla_       61 IAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNEVAQISDYYPRNSIDTKEYMSTLTYGF    120

Query         43 ------------------------------------------NVQLLREPETAESFHDTP     60
d7ahla_      121 NGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFKTILESPTDKKVGW-------------    167

Query         61 TLYGIPILFPPNRISDGTFSFRGRTYHFDINE-KDK----HNHL----------------     99
d7ahla_      168 ---KVI-F--NNMV--NQ-------NWGPYDRDSWNPVYGNQLFMKTRNGSMKAADNFLD    212

Query        100 --HGFLYHEKWNVVTTKQTDEGVIVETEIDLSELPHVQKQFPHHAVVRMTYTIKENT---    154
d7ahla_      213 PNKASSLLSSG---------------F---------------------SPDFA-TVITMD    235

Query        155 --------------LFKHATVMNKGKEAFPWGIGYHTT--------------------FI    180
d7ahla_      236 RKASKQQTNIDVIY-----------------------ERVRDDYQLHWTSTNWKGTNT--    270

Query        181 FPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVFLSSYQKRG    240
d7ahla_      271 ------------------------------------------------------------    271

Query        241 GENQAVIYHQHAHISIIYKADEQFKHWVVYNA----------------------DGKQGY    278
d7ahla_      271 -------------------------------KDKWTDRSSERYKIDWEKEEMTN------    293

Query        279 LCPEPYTWVTNAVNLDLPSSLTGLQVLEPGEETTAKSSITIELN    322
d7ahla_      294 --------------------------------------------    294

hit structure alignment

HHsearch alignment (Probability: 0.05 E-value:0.07)

DALI match                                                      
Query        138 FPHHAVVRMTYTIKENTLFKHATVMNKGKEAFPWGIGYHTTFIFPAE    184
d7ahla_       80 WPSAFKVQLQLPDNEVAQISDYYPRNSID---TKEYMSTLTYGFNGN    123

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33: d1k45a_ Carbohydrate binding module from a thermostable xylanase (cs: 2.098)

SCOP Superfamily: Galactose-binding domain-like | SCOP Fold: Galactose-binding domain-like | SCOP Class: All beta proteins

Consensus: 0.32 Contact: 729
Modified z-scores:
dali:0.93 daliz:0.93 gdtts:0.95 tmscore:0.96 rmsd:0.37 AHM:0.44 LBcontacta:0.92 LBcontactb:0.91 LHM:0.20
id:0.92 blosum:0.16 compass:0.62 pearson:0.83
Scaled scores:
dali:0.74 daliz:0.40 gdtts:0.54 tmscore:0.59 rmsd:0.78 AHM:0.69 LBcontacta:0.57 LBcontactb:0.67 LHM:0.34
id:0.03 blosum:0.04 compass:0.01 pearson:0.08

hit structure alignment

DALI alignment (Z-score: 2.9 Raw score:410.20)

Query          1 anfiekitylgtpaikagnehlEMIV-vPEWG-SNVIslvdkttnvqllrepetaesfhd     58
d1k45a_        1 -----------mlvaninggfeSTPAgvVTDLaEGVE-----------------------     26

Query         59 tptlyGIPILFPpnrisdgtfsfrgrtyhfdinekdkhnhlhgflyhekwnvvttkqtde    118
d1k45a_       27 -----GWDLNVG------------------------------------------------     33

Query        119 gviveteidlselphvqkqfphHAVVRMTYTIKE----NTLFKHATVMNkgkeaFPWG-I    173
d1k45a_       34 -------------------ssvTNPPVFEVLETSdapeGNKVLAVTVNG---vgNNPWdI     71

Query        174 GYHTTFIFPAE-SSLFSltadqqwelderllptgklmdvpykealhegmdlrhkqlddvf    232
d1k45a_       72 EATAFPVNVRPgVTYTY-------------------------------------------     88

Query        233 lssyqkrggenqaviyhqhahisiIYKAD-----EQFKhWVVYNAD--------------    273
d1k45a_       89 ------------------------TIWARaeqdgAVVS-FTVGNQSfqeygrlheqqitt    123

Query        274 ------------gKQGYLCPEPYTwvtnavnldlpssltglqvlepgeETTAKSSI--ti    319
d1k45a_      124 ewqpftfeftvsdQETVIRAPIHF------------------gyaanvGNTIYIDGlaia    165

Query        320 eln    322
d1k45a_      166 sqp    168

hit structure alignment

FAST alignment (Normalized score: 2.25 Raw score:523.60)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d1k45a_        1 ------------------------------------------------------------      1

Query         61 TL-------------------------YGIPILFPPNRISDGTFSFRGRTYHFDINEKDK     95
d1k45a_        1 --MLVANINGGFESTPAGVVTDLAEGVEGWDLN---------------------------     31

Query         96 HNHLHGFLYHEKWNVVTTKQTDEGVIVETEIDLSELPHVQKQFPH-----HAVVRMTYTI    150
d1k45a_       32 ---------------------------------------------VGSSVTNPPVFEVLE     46

Query        151 KEN------TLFKHATVMNKGKEAFPW--------GIGYH-TTFIFPAESSLFSLTADQQ    195
d1k45a_       47 T--SDAPEGNKVLAVTV----------NGVGNNPWDIEATAFPVNVRPGV----------     84

Query        196 WELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVFLSSYQKRGGENQAVIYHQHAH-I    254
d1k45a_       85 ----------------------------------------------------------TY     86

Query        255 SIIYKADEQF--------KHWVVYNAD----------------------------GKQGY    278
d1k45a_       87 TYTIWA----RAEQDGAVVSFTVGN--QSFQEYGRLHEQQITTEWQPFTFEFTVSDQETV    140

Query        279 LCPEPYTWVTNAVNLDLPSSLTGLQVLEPGE-------ETTAKSSITIELN---------    322
d1k45a_      141 IRAPIH-------------------------FGYAANVGNTIYI-------DGLAIASQP    168

hit structure alignment

TMalign alignment (TM-score: 0.28 Raw score:88.78)

Query          1 ------ANFIEKITYLGTPAIKA---GNEHLEMIV---VPE-WGSNVISLVDKTTNVQLL     47
d1k45a_        1 MLVANI----------------NGGF-----ESTPAGVVTDLAEGVE-------------     26

Query         48 REPETAESFHDTPTLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEK    107
d1k45a_       27 ----------------GWDLNVG-----------------S-------------------     34

Query        108 WNVVTTKQTDEGVIVETEIDLSELPHVQKQFPHHAVVRMTYTIKENTL-FKHATVMNKGK    166
d1k45a_       35 -----------------------------SVTNPPVFEVLETSDAPEGNKVLAVTVN---     62

Query        167 EAFP----WGIGYHTTFIFPAESSLFSLT-------------------ADQQWELDERLL    203
d1k45a_       63 -GVGNNPWDIEATAFPVNVRPG-VTYTYTIWARAEQDGAVVSFTVGNQ------------    108

Query        204 PTGKLMDVPYKEALHEGMDLRHKQLDDVFLSSYQK-----RGGENQAVIYHQHAHISIIY    258
d1k45a_      109 -----------------------SFQEYGRLHEQQITTEW--QPFTFEFT----------    133

Query        259 KADEQFKHWVVYNADGKQGYLCPEPYTWVTNAVNLDLPSSLTGLQ-VLEPGEETTAKSSI    317
d1k45a_      134 ------------VSDQE-TVIRAPIHFG---------------YAANV---GNTIYIDGL    162

Query        318 T-IELN    322
d1k45a_      163 AIASQP    168

hit structure alignment

HHsearch alignment (Probability: 0.03 E-value:0.09)

DALI match                                                
Query        138 FPHHAVVRMTYTIKENTLFKHATVMNKGKEAFPWGIGYHTT    178
d1k45a_       76 FPVNVRPGVTYTY-----TIWARAE-QDGAVVSFTVGNQSF    110

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34: d1qd6.1 Outer membrane phospholipase A (OMPLA) (cs: 2.074)

SCOP Superfamily: Outer membrane phospholipase A (OMPLA) | SCOP Fold: Transmembrane beta-barrels | SCOP Class: Membrane and cell surface proteins and peptides

Consensus: 0.26 Contact: 507
Modified z-scores:
dali:0.93 daliz:0.93 gdtts:0.92 tmscore:0.94 rmsd:0.44 AHM:0.54 LBcontacta:0.95 LBcontactb:0.93 LHM:0.23
id:0.68 blosum:0.05 compass:0.08 pearson:0.28
Scaled scores:
dali:0.81 daliz:0.52 gdtts:0.49 tmscore:0.53 rmsd:0.78 AHM:0.67 LBcontacta:0.66 LBcontactb:0.77 LHM:0.35
id:-0.01 blosum:-0.02 compass:-0.06 pearson:-0.07

hit structure alignment

DALI alignment (Z-score: 2.0 Raw score:381.90)

Query          1 -----anfiEKITyLGTPaikagnehlemivvpewgsnvislvdkttnvqllrepetaes     55
d1qd6.1        1 avrgsiianMLQE-FTLY------------------------------------------     17

Query         56 fhdtPTLY----------------------------------------------gipilf     69
d1qd6.1       18 -pydTNYLiytqtsdlnkeaiasydwaenarkdevkfqlslafplwrgilgpnsvlgasy     76

Query         70 PPNRisdgtfsfrgrtyhfdiNEKD-------KHNHLHGFLyheKWNVVTT-KQTDEGVI    121
d1qd6.1       77 TQKS-----------------WWQLsnseessPFRETNYEP--qLFLGFATdYRFAGWTL    117

Query        122 -VETEIDLS--elphvqkQFPHHAVVRMTYTIKENTLFKHATVMNKGKE---AFPWgigy    175
d1qd6.1      118 rDVEMGYNHdsngrsdptSRSWNRLYTRLMAENGNWLVEVKPWYVVGNTddnPDIT----    173

Query        176 httfifpaesslfsltadqqwelderllptgklmdvpykealhegmdlrhkqlddvflss    235
d1qd6.1      174 ------------------------------------------------------------    174

Query        236 yqkrggenqaviyhqhahisiiykadeqfkhwvvynadgkqgylcpepytwvtnavnldl    295
d1qd6.1      174 ------------------------------------------------------------    174

Query        296 pssltgLQVLepgeeTTAKSSITIELN---------------------------------    322
d1qd6.1      174 ------KYMG-----YYQLKIGYHLGDavlsakgqynwntgyggaelglsypitkhvrly    222

Query        323 -------------------------------    323
d1qd6.1      223 tqvysgygeslidynfnqtrvgvgvmlndlf    253

hit structure alignment

FAST alignment (Normalized score: 1.55 Raw score:442.60)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d1qd6.1        1 ------------------------------------------------------------      1

Query         61 TLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFL-----------------    103
d1qd6.1        1 -------------------------------------------AVRGSIIANMLQEFTLY     17

Query        104 ------------------------------------------------------------    104
d1qd6.1       18 PYDTNYLIYTQTSDLNKEAIASYDWAENARKDEVKFQLSLAFPLWRGILGPNSVLGASYT     77

Query        104 ---------------------YHEKWNVVTT--KQTDEGV-IVETEIDLSELPHVQKQF-    138
d1qd6.1       78 QKSWWQLSNSEESSPFRETNYEPQLFL-GFATDYRFAGWTLRDVEMGY-----------N    125

Query        139 ------------PHHAVVRMTYTIKENTLFKHATVMNKGKEAFPWGIGYHTTFIFPAESS    186
d1qd6.1      126 HDSNGRSDPTSRSWNRLYTRLMAENGNWLVEVKPWYVVG---------------------    164

Query        187 LFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVFLSSYQKRGGENQAV    246
d1qd6.1      165 ------------------------------------------------------------    165

Query        247 IYHQHAH------------------------ISIIYKADEQF-----------KHWVVYN    271
d1qd6.1      165 -------NTDDNPDITKYMGYYQLKIGYHLGDAVLSAK----GQYNWNTGYGGAELGLS-    212

Query        272 AD---GKQGYLCPEPYTWVTNAVNLDLPSSLTGLQVLEPGEETTAKSSITIELN------    322
d1qd6.1      213 --YPITKHVRLYTQV---------------------------------------YSGYGE    231

Query        323 ----------------------    323
d1qd6.1      232 SLIDYNFNQTRVGVGVMLNDLF    253

hit structure alignment

TMalign alignment (TM-score: 0.34 Raw score:109.30)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEW-GSNVI-SLVDKTTNVQLLREPETAESFH-     57
d1qd6.1        1 ---------------AV-----RGSIIANML----QE----------------FTL-YPY     19

Query         58 DTPTLY-----------------------------GIP------------------ILFP     70
d1qd6.1       20 -DTNYLIYTQTSDLNKEAIASYDWAENARKDEVKFQLSLAFPLWRGILGPNSVLGASYTQ     78

Query         71 PNRIS------DGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDE-GVI-V    122
d1qd6.1       79 KSWWQLSNSEE-----------------SSPFRETNYEP--QLFLGFATDYRFAGWTLRD    119

Query        123 ETEIDLSELPHV-QK---QFPHHAVVRMTYTIKENTLFKHATVMNKGKE---AFPW--G-    172
d1qd6.1      120 VEMGYNH-DSNGR-SDPTSRSWNRLYTRLMAENGNWLVEVKPWYVVGNTDDNPDITKYMG    177

Query        173 -IGYHTTFIFPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDV    231
d1qd6.1      178 YYQL-K------------------------------------------------------    182

Query        232 FLSSYQKRGGENQAVIYHQHAHISIIYKAD-E------QFKHWVVYN-ADGK-QGYLCPE    282
d1qd6.1      183 ------------IGYHLG----DAVLSAKGQYNWNTGYGGAELGLSYP--ITKHVRLYTQ    224

Query        283 PY-TWVTNAVNLDLPSSLTG----------LQVLEPGEETTAKSSITIELN    322
d1qd6.1      225 VYSGYGESLIDY--NF-NQTRVGVGVMLND---------------LF----    253

hit structure alignment

HHsearch alignment (Probability: 0.08 E-value:0.02)

DALI match                                                              
Query        106 EKWNVVTTKQTDEGVIVETEIDLSELPHVQKQFPHHAVVRMTYTIKENTLFKHAT    160
d1qd6.1      158 KPWYVVGNTDD--------------NPDITK-YMGYYQLKIGYHLGDAVLSAKGQ    197

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35: d1guia_ Carbohydrate binding module from laminarinase 16A (cs: 2.037)

SCOP Superfamily: Galactose-binding domain-like | SCOP Fold: Galactose-binding domain-like | SCOP Class: All beta proteins

Consensus: 0.28 Contact: 639
Modified z-scores:
dali:0.88 daliz:0.90 gdtts:0.88 tmscore:0.91 rmsd:0.41 AHM:0.40 LBcontacta:0.90 LBcontactb:0.90 LHM:0.22
id:0.66 blosum:0.06 compass:0.35 pearson:0.66
Scaled scores:
dali:0.71 daliz:0.38 gdtts:0.46 tmscore:0.50 rmsd:0.75 AHM:0.67 LBcontacta:0.59 LBcontactb:0.71 LHM:0.28
id:-0.01 blosum:-0.01 compass:0.04 pearson:0.04

hit structure alignment

DALI alignment (Z-score: 1.8 Raw score:337.50)

Query          1 anfiekitylgtpaikagnehlEMIVvpewgsnvislvdkttnvqllrepetaesfhdTP     60
d1guia_        1 ---------------sinngtfDEPI----------------------------vndqAN     17

Query         61 TLYGIPILFPpnrisdgtfsfrgrtyhfdinekdkhnhlhgflyhekwnvvttkqtdegv    120
d1guia_       18 NPDEWFIWQA--------------------------------------------------     27

Query        121 iveteidlselphvqkqfphhavVRMTYTIKenTLFKHATVmnkgkeafpwGIGYHTTFi    180
d1guia_       28 --------------gdygisgarVSDYGVRD--GYAYITIA---dpgtdtwHIQFNQWI-     67

Query        181 FPAE-SSLFSLtadqqwelderllptgklmdvpykealhegmdlrhkqlddvflssyqkr    239
d1guia_       68 GLYRgKTYTIS-------------------------------------------------     78

Query        240 ggenqaviyhqhahisiIYKAD--eqfKHWVVYNA-------------------------    272
d1guia_       79 -----------------FKAKAdtprpINVKILQNhdpwtnyfaqtvnltadwqtftfty    121

Query        273 ---dgKQGYLCPEPYTWvtnavnldlpssltglqvlepgeeTTAKSSIT--ieln    322
d1guia_      122 thpddADEVVQISFELG---------------------egtATTIYFDDvtvspq    155

hit structure alignment

FAST alignment (Normalized score: 2.28 Raw score:509.80)

Query          1 ANFIEKITYLGTPAIKAGNEHL-------EMIVVPEWGSNVISLVDKTTNVQLLREPETA     53
d1guia_        1 ----------------------SINNGTFDEPIVN-------------------------     13

Query         54 ESFHDTPT-----LYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKW    108
d1guia_       14 --------DQANNPDEWFIW----------------------------------------     25

Query        109 NVVTTKQTDEGVIVETEID-LSELPHVQKQFPHHAV-VRMTYTIKENT--LFKHATVMNK    164
d1guia_       26 -------------------QAGDYG------ISGARVSDYGV------RDGYAYITI---     51

Query        165 GKEAFPW--------GIGYHTTFIFPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEA    216
d1guia_       52 -------ADPGTDTWHIQFNQWIGLYR-GKTY----------------------------     75

Query        217 LHEGMDLRHKQLDDVFLSSYQKRGGENQAVIYHQHAHISIIYKADEQF-------KHWVV    269
d1guia_       76 --------------------------------------TISFKA----KADTPRPINVKI     93

Query        270 YNADG---------------------------------KQGYLCPEPYTWVTNAVNLDLP    296
d1guia_       94 -----LQNHDPWTNYFAQTVNLTADWQTFTFTYTHPDDADEVVQISFE------------    136

Query        297 SSLTGLQVLEPGE-----ETTAKSSITIELN--------    322
d1guia_      137 -------------LGEGTATTIYF-------DDVTVSPQ    155

hit structure alignment

TMalign alignment (TM-score: 0.27 Raw score:87.15)

Query          1 --ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHD     58
d1guia_        1 SI---------------NN----GTFDEPI-VNDQ----------------------AN-     17

Query         59 TPTLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDE    118
d1guia_       18 -N-PDEWFIW-Q--AGDYGIS------G-A------------RV----------------     37

Query        119 GVIVETEIDLSELPHVQKQFPHHAVVRMTYTIKENTLFKHATVMNKGKEAFPWG-----I    173
d1guia_       38 -----------------------SDYGVRDG-------YAYITI------ADPGTDTWHI     61

Query        174 GYHTTFIFPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVFL    233
d1guia_       62 QFNQWIGLYRG-KT----------------------------------------------     74

Query        234 SSYQKRGGENQAVIYHQHAHISIIYKAD---EQFKHWVVYN-A-D---------------    273
d1guia_       75 --------------Y------TISFKAKADTPRPINVKILQNHDPWTNYFAQTVNLTADW    114

Query        274 ------------GKQGYLCPEPYTWVTNAVNLDLPSSLTGLQVLEPGEETTAKSS-ITIE    320
d1guia_      115 QTFTFTYTHPDDAD-EVVQISFELG-------------EGTA-------TTIYFDDVTVS    153

Query        321 LN    322
d1guia_      154 PQ    155

hit structure alignment

HHsearch alignment (Probability: 0.06 E-value:0.01)

DALI match                         
Query        305 LEPGEETTAKSSITIELN    322
d1guia_       69 LYRGKTYTISFKAKADTP     86

hit structures.

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36: d1qhda2 vp6, the major capsid protein of group A rotavirus (cs: 2.030)

SCOP Superfamily: Viral protein domain | SCOP Fold: Viral protein domain | SCOP Class: All beta proteins

Consensus: 0.40 Contact: 716
Modified z-scores:
dali:0.96 daliz:0.94 gdtts:0.93 tmscore:0.96 rmsd:0.51 AHM:0.57 LBcontacta:0.95 LBcontactb:0.94 LHM:0.35
id:0.89 blosum:0.14 compass:0.48 pearson:0.87
Scaled scores:
dali:0.77 daliz:0.44 gdtts:0.46 tmscore:0.52 rmsd:0.76 AHM:0.67 LBcontacta:0.59 LBcontactb:0.69 LHM:0.23
id:0.02 blosum:0.04 compass:0.04 pearson:0.07

hit structure alignment

DALI alignment (Z-score: 2.5 Raw score:379.60)

Query          1 anfiekitylgtpaikagnEHLEmivvpewgsnvislvdkttnvqllrepetaesfhdtp     60
d1qhda2        1 ------------gftfhkpNIFP-------------------------------------     11

Query         61 tlygipilfppnrisdgtfsfrgrtyhfdinekdkhnhlhgflyhekwnvvttkqtdeGV    120
d1qhda2       12 ----------------------------------------------------------YS     13

Query        121 IVETEIDLSELphvqkqfphHAVVRMTYTIKENTLFKHATVMN-kgkeafPWGIGYhttf    179
d1qhda2       14 ASFTLNRSQPA--------hDNLMGTMWLNAGSEIQVAGFDYScainapaNTQQFE----     61

Query        180 ifpaesslfsltadqqwelderllptgklmdvpykealhegmdlrhkqlddvflssyqkr    239
d1qhda2       62 ------------------------------------------------------------     62

Query        240 ggenqaviyhqhAHISIIYKAD-------------------------eQFKHWVvynadg    274
d1qhda2       62 ---hivqlrrvlTTATITLLPDaerfsfprvitsadgattwyfnpvilRPNNVE-iefll    117

Query        275 KQGY-LCPE----------------PYTWvtnaVNLDlpssltglqvlePGEETTAKSSI    317
d1qhda2      118 NGQIiNTYQarfgtiiarnfdtirlSFQL-mrpPNMTpavaalfpnaqpFEHHATVGLTL    176

Query        318 TIELN---    322
d1qhda2      177 RIESAvce    184

hit structure alignment

FAST alignment (Normalized score: 2.41 Raw score:587.00)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d1qhda2        1 ------------------------------------------------------------      1

Query         61 TLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDE--    118
d1qhda2        1 ----------------------------------------------------------GF      2

Query        119 ---------GVIVETEIDLSELPHVQKQFPH----HAVVRMTYTIKENTLFKHATVMNKG    165
d1qhda2        3 TFHKPNIFPYSASFTLNRS------------QPAHDNLMGTMWLNAGSEIQVAGFD----     46

Query        166 KEAFP---------WGIGYHTTFIFPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEA    216
d1qhda2       47 -----YSCAINAPANTQQFEHIVQL-----------------------------------     66

Query        217 LHEGMDLRHKQLDDVFLSSYQKRGGENQAVIYHQH----AHISIIYKADE----------    262
d1qhda2       67 -----------------------------------RRVLTTATITLL---PDAERFSFPR     88

Query        263 ------------------QFKHWVVYNADGK---------------------QGYLCPEP    283
d1qhda2       89 VITSADGATTWYFNPVILRPNNVEIEF----LLNGQIINTYQARFGTIIARNFDTIRLSF    144

Query        284 YTWVTNAVNLDLPSSLTGLQVLE--------------------PGEETTAKSSITIELN-    322
d1qhda2      145 Q----------------------LMRPPNMTPAVAALFPNAQPFEHHATVGLTLRIE--S    180

Query        323 ----    323
d1qhda2      181 AVCE    184

hit structure alignment

TMalign alignment (TM-score: 0.26 Raw score:84.78)

Query          1 ------ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAE     54
d1qhda2        1 GFTFHK-------------------PNIFP------------------------------     11

Query         55 SFHDTPTLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTK    114
d1qhda2       12 ------------------------------------------------------------     12

Query        115 QTDEGVIVETEIDLSE--LPHVQKQFPHHAVVRMTYTIKENTLFKHATVMNKGKEAF---    169
d1qhda2       12 ----YSASFTLNRSQPAH----------DNLMGTMWLNAGSEIQVAGFDYSC--AINAPA     55

Query        170 PWGIGYHTTFI--FPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQ    227
d1qhda2       56 NTQQFEHIVQLRR-----------------------------------------------     68

Query        228 LDDVFLSSYQKRGGENQAVIYHQHAHISIIYKAD-------------------------E    262
d1qhda2       69 ---------------------V-LTTATITLLPDAERFSFPRVITSADGATTWYFNPVIL    106

Query        263 QFKHWVVYN----ADGKQGYLCP-----------------EPYTWVTNAVNLDLPSS---    298
d1qhda2      107 RPNNVEIEFLLNG----QIINTYQARFGTIIARNFDTIRLSFQLM---RP----PNMTPA    155

Query        299 -LTGLQ-VLE--P-GE-ETTAKSSITIELN---    322
d1qhda2      156 V----AALFPNAQPFEHHATVGLTLRIESAVCE    184

hit structure alignment

HHsearch alignment (Probability: 0.06 E-value:0.11)

DALI match                                                                 
Query         15 IKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTPTLYGIPILFPPN     72
d1qhda2      104 VILRPNNVEIEFL--LNGQIINTYQARFGTIIARNFDT--------IRLSFQLMRPPN    151

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37: d1hn0a3 Chondroitin ABC lyase I (cs: 2.015)

SCOP Superfamily: Hyaluronate lyase-like, C-terminal domain | SCOP Fold: Hyaluronate lyase-like, C-terminal domain | SCOP Class: All beta proteins

Consensus: 0.00 Contact: 689
Modified z-scores:
dali:0.93 daliz:0.91 gdtts:0.94 tmscore:0.97 rmsd:0.41 AHM:0.43 LBcontacta:0.97 LBcontactb:0.95 LHM:0.17
id:0.98 blosum:0.21 compass:0.40 pearson:0.85
Scaled scores:
dali:0.71 daliz:0.35 gdtts:0.49 tmscore:0.55 rmsd:0.79 AHM:0.70 LBcontacta:0.64 LBcontactb:0.71 LHM:0.40
id:0.06 blosum:0.05 compass:0.04 pearson:0.06

hit structure alignment

DALI alignment (Z-score: 2.4 Raw score:341.50)

Query          1 anfIEKI-tylgtPAIKAGnehlemivvpewGSNVISlvdkttnvqllrepetaesfhdt     59
d1hn0a3        1 ---YQVLrkdkdvHIILDKlsnvtgyafyqpASIEDK-----------------------     34

Query         60 ptlyGIPILFppnrisdgtfsfrgrtyhfdinekdkhnhlhgflyhekwnvvttkqtdeg    119
d1hn0a3       35 ---wIKKVNK--------------------------------------------------     41

Query        120 viveteidlselphvqkqfphhavVRMTYTIKENTLFKHATVM-NKGK---EAFPWGIGY    175
d1hn0a3       42 -----------------------pAIVMTHRQKDTLIVSAVTPdLNMTrqkAATPVTINV     78

Query        176 HTTFifpaesslfsltadqqwelderllptgklmdvpykealhegmdlrhkqlddvflss    235
d1hn0a3       79 TING--------------------------------------------------------     82

Query        236 yqkrggenqaviyhqhahisIIYK--aDEQFkhWVVYNadgkqgyLCPEPYTwvtnavnl    293
d1hn0a3       83 -------------------kWQSAdknSEVK--YQVSG-------DNTELTF--------    106

Query        294 dlpssltglqvlepgEETTAKSSITIeln    322
d1hn0a3      107 ------------tsyFGIPQEIKLSP-lp    122

hit structure alignment

FAST alignment (Normalized score: 2.87 Raw score:568.50)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d1hn0a3        1 ------------------------------------------------------------      1

Query         61 TLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYH---------EKWNVV    111
d1hn0a3        1 ---------------------------------------------YQVLRKDKDVHIIL-     14

Query        112 TTKQTDEG--VIVETEIDLSELPHVQKQFP--------------HHAVVRMTYTIKENT-    154
d1hn0a3       15 --------DKLSNVTGYAFY----------QPASIEDKWIKKVNKPAIVMTHR------Q     50

Query        155 -LFKHATVMNKG--------KEAFPWGIGYHTTFIFPAESSLFSLTADQQWELDERLLPT    205
d1hn0a3       51 KDTLIVSAVTPDLNMTRQKAATPVTINVTI------------------------------     80

Query        206 GKLMDVPYKEALHEGMDLRHKQLDDVFLSSYQKRGGENQAVIYHQHAHISIIYKADEQF-    264
d1hn0a3       81 -----------------------------------------------------------N     81

Query        265 -------------KHWVVYNADGKQGYLCPEPYTWVTNAVNLDLPSSLTGLQVLEPGEET    311
d1hn0a3       82 GKWQSADKNSEVKYQVS-----------GDNTE----------------LTFTSYFGIPQ    114

Query        312 TAKSSITIELN-    322
d1hn0a3      115 EIKLSPL----P    122

hit structure alignment

TMalign alignment (TM-score: 0.27 Raw score:85.72)

Query          1 ANFIEKITYLGTPAIKAGNE--HLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHD     58
d1hn0a3        1 -YQVLRKD---KDVHIILDKLSNVTGYAFY-QP-ASIED-------KWIK----------     37

Query         59 TPTLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDE    118
d1hn0a3       38 -----KVNK------------------------------------P--------------     42

Query        119 GVIVETEIDLSELPHVQKQFPHHAVVRMTYTIKEN----TLFKHAT-VMNKGKEAFPWGI    173
d1hn0a3       43 ---------------------------AIVMTHRQKDTLIVSAVTPDLNMTR-QKAATPV     74

Query        174 GYHTTFIFPAESSLFS-LTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVF    232
d1hn0a3       75 TINVTING----KWQSADK-----------------------------------------     89

Query        233 LSSYQKRGGENQAVIYHQHAHISIIYKADEQFKHWVVYNADGKQGYLCPEPYTWVTNAVN    292
d1hn0a3       90 ---------NSE---------------V------KYQVS----GDNTELTFTS-------    108

Query        293 LDLPSSLTGLQVLEPGEETTAKSSITIEL--N    322
d1hn0a3      109 ----------Y-------FGIPQEIKLSPLP-    122

hit structure alignment

HHsearch alignment (Probability: 0.04 E-value:0.06)

DALI match                             .............               
Query        145 RMTYTIKENTLFKHATVMNKGKEAFPWGIGYHTTFIFPAESSLFSLTADQ    194
d1hn0a3       53 TLIVSAVTPDLNMT---RQKAATPVTINVTINGKWQSADKNSEVKYQVSG     99

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38: d3lkfa_ Leukocidin F (HlgB) (svm: 0.894)

SCOP Superfamily: Leukocidin-like | SCOP Fold: Leukocidin-like | SCOP Class: Membrane and cell surface proteins and peptides

Consensus: 0.00 Contact: 831
Modified z-scores:
dali:0.96 daliz:0.95 gdtts:0.95 tmscore:0.97 rmsd:0.44 AHM:0.50 LBcontacta:0.94 LBcontactb:0.92 LHM:0.42
id:0.81 blosum:0.04 compass:0.10 pearson:0.63
Scaled scores:
dali:0.76 daliz:0.45 gdtts:0.51 tmscore:0.58 rmsd:0.77 AHM:0.67 LBcontacta:0.59 LBcontactb:0.66 LHM:0.16
id:-0.00 blosum:-0.03 compass:-0.01 pearson:-0.01

hit structure alignment

DALI alignment (Z-score: 2.7 Raw score:440.70)

Query          1 anfiekitylgtpaikagnehlemivvpewgsnvislvdkttnvqllrepetaesfhdtp     60
d3lkfa_        1 ------------------------------------------------------------      1

Query         61 tlygipilfppnrisdgtfsfrgrtyhfdinekdkhnhlhgflyhEKWNVVTTKQTD---    117
d3lkfa_        1 ---------------------------------------------EGKITPVSVKKVddk     15

Query        118 EGVIVETEIDLSelphvqkqFPHHAVVRMTYTIKE----NTLFKHATVMNKGKE------    167
d3lkfa_       16 VTLYKTTATADS-------dKFKISQILTFNFIKDksydKDTLVLKATGNINSGfvkpnp     68

Query        168 -----------afPWGIGYHTTFifpaesslfsltadqqwelderllptgklmdvpykea    216
d3lkfa_       69 ndydfsklywgakYNVSISSQSN-------------------------------------     91

Query        217 lhegmdlrhkqlddvflssyqkrggenqaviyhqhahiSIIY-KADEQ------------    263
d3lkfa_       92 --------------------------------------DSVNvVDYAPknqneefqvqnt    113

Query        264 ---------------------------------fKHWVvynadgkqgylcPEPYTwvtna    290
d3lkfa_      114 lgytfggdisisngltafsetinykqesyrttlsRNTN------------YKNVG-----    156

Query        291 vnldlpssltGLQV----------------------------------------------    304
d3lkfa_      157 ----------WGVEahkimnngwgpygrdsfhptygnelflagrqssayagqnfiaqhqm    206

Query        305 ----lePGEETTAKSSITIELN--------------------------------------    322
d3lkfa_      207 pllsrsNFNPEFLSVLSHRQDGakkskitvtyqremdlyqirwngfywaganyknfktrt    266

Query        323 --------------------------    323
d3lkfa_      267 fkstyeidwenhkvklldtketennk    292

hit structure alignment

FAST alignment (Normalized score: 1.20 Raw score:368.40)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d3lkfa_        1 ------------------------------------------------------------      1

Query         61 TLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYH---------------    105
d3lkfa_        1 ---------------------------------------------EGKITPVSVKKVDDK     15

Query        106 --EKWNVVTTKQT---DEGVIVETEIDLSELPH-VQKQFPHHAVVRMTYTIKE-------    152
d3lkfa_       16 VTLYKT-TATAD-SDKFKISQILTFNF------IKDKSYDKDTLVLKATGNI-NSGFVKP     66

Query        153 ------------------------------------------------------------    153
d3lkfa_       67 NPNDYDFSKLYWGAKYNVSISSQSNDSVNVVDYAPKNQNEEFQVQNTLGYTFGGDISISN    126

Query        153 ------------------------------------------------------------    153
d3lkfa_      127 GLTAFSETINYKQESYRTTLSRNTNYKNVGWGVEAHKIMNNGWGPYGRDSFHPTYGNELF    186

Query        153 --------------------------NTLFKHATVMNKGKEAFPWGIGYHTTFIFPAESS    186
d3lkfa_      187 LAGRQSSAYAGQNFIAQHQMPLLSRSNFNPEFLSVLS-----------------------    223

Query        187 LFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVFLSSYQKRGGENQAV    246
d3lkfa_      224 ------------------------------------------------------------    224

Query        247 IYHQHAHISIIYKADEQFKHWVVYNADGKQGYLCPEPYTWVTNAVNLDLPSSLTGLQVLE    306
d3lkfa_      224 ------------------------------------------------------------    224

Query        307 PGEETTAKSSITIELN--------------------------------------------    322
d3lkfa_      224 ----------------HRQDGAKKSKITVTYQREMDLYQIRWNGFYWAGANYKNFKTRTF    267

Query        323 -------------------------    323
d3lkfa_      268 KSTYEIDWENHKVKLLDTKETENNK    292

hit structure alignment

TMalign alignment (TM-score: 0.33 Raw score:104.78)

Query          1 ANFIEKITYLGTPAIKAGNE--------------HLEMIVVPEWGSNVISLVDKTTN---     43
d3lkfa_        1 --------------EGKITPVSVKKVDDKVTLYKTTATADSDK-FKIS-QILTFNFIKDK     44

Query         44 ------VQLLREPETAESFHDTPTLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHN     97
d3lkfa_       45 SYDKDTLVLK-----------------A--------------------------------     55

Query         98 HLHGFLYHEKWNVVTTKQTDEGVIVETEIDLSELPHVQKQFPHHAVVRMTYTIKENTLFK    157
d3lkfa_       56 --------------------------------------------------------TGNI     59

Query        158 HATVMNKGK-----EAFPWGIGYHTTFIF-----PAESSLFSLTADQQWELDERLLPTGK    207
d3lkfa_       60 NSGFVKPNPNDYDFSKLYWGAKYNVSISSQSNDSVNVVDYAPK-----------------    102

Query        208 LMDVPYKEALHEGMDLRHKQLDDVFLSSYQKRGGENQAVIYHQ---H-A--------HIS    255
d3lkfa_      103 ---------N--------------QNEEF-----QVQ-NTLGYTFGGDISISNGLTAFSE    133

Query        256 IIYKADEQFKHWVVYNADGKQGYLCPEPYTWV--------TNAVNLDL----PSSLTGLQ    303
d3lkfa_      134 TINYKQES-YRTTLSRNTNY-KNVGWGVEAHKIMNNGWGP-YGRDSFHPTYG----NELF    186

Query        304 VL--------EP-G-EE-------TTAKSSITIEL-------------------------    321
d3lkfa_      187 LAGRQSSAYAGQNFIAQHQMPLLSRSNFNPEFLSVLSHRQDGAKKSKITVTYQREMDLYQ    246

Query        322 ----------------------------------------------N    322
d3lkfa_      247 IRWNGFYWAGANYKNFKTRTFKSTYEIDWENHKVKLLDTKETENNK-    292

hit structure alignment

HHsearch alignment (Probability: 0.02 E-value:0.20)

DALI match                                                      
Query        138 FPHHAVVRMTYTIKENTLFKHATVMNKGKEAFPWGIGYHTTFIFPAE    184
d3lkfa_       78 WGAKYNVSISSQSNDSVNVVDYAPKNQNE---EFQVQNTLGYTFGGD    121

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39: d1e42a1 Beta2-adaptin AP2 ear domain, N-terminal subdomain (svm: 0.878)

SCOP Superfamily: Clathrin adaptor appendage domain | SCOP Fold: Immunoglobulin-like beta-sandwich | SCOP Class: All beta proteins

Consensus: 0.53 Contact: 581
Modified z-scores:
dali:0.92 daliz:0.95 gdtts:0.92 tmscore:0.93 rmsd:0.37 AHM:0.43 LBcontacta:0.89 LBcontactb:0.90 LHM:0.43
id:0.89 blosum:0.75 compass:0.57 pearson:0.94
Scaled scores:
dali:0.78 daliz:0.51 gdtts:0.54 tmscore:0.56 rmsd:0.76 AHM:0.63 LBcontacta:0.59 LBcontactb:0.76 LHM:0.05
id:0.04 blosum:0.13 compass:0.17 pearson:0.17

hit structure alignment

DALI alignment (Z-score: 2.7 Raw score:336.50)

Query          1 anfiekitylgtpaikagnehlemivvpewgsnvislvdkttnvqllrepetaesfhdtp     60
d1e42a1        1 ------------------------------------------------------------      1

Query         61 tlygipilfppnrisdgtfsfrgrtyhfdinekdkhnhlhgflyhekwnvvttkqtdEGV    120
d1e42a1        1 ---------------------------------------------------------GGY      3

Query        121 I-VETE-IDLSElphvqkqfpHHAVVRMTYTIKENTLFKHATVMNKGKEAFPWGIGYHTT    178
d1e42a1        4 VaPKAVwLPAVK--------aKGLEISGTFTHRQGHIYMEMNFTNKALQHMTDFAIQFNK     55

Query        179 FIfpaesslfsltadqqwelderllptgklmdvpykealhegmdlrhkqlddvflssyqk    238
d1e42a1       56 NS----------------------------------------------------------     57

Query        239 rggenqaviyhqhahisiiYKADEQfkhwvvynadgkqgylcpepytwvtnavnldlpss    298
d1e42a1       58 ---------------fgviPSTPLA-----------------------------------     67

Query        299 ltgLQVLEPGEETTAKSSIT-------------------------------ieln    322
d1e42a1       68 --iHTPLMPNQSIDVSLPLNtlgpvmkmeplnnlqvavknnidvfyfscliplnv    120

hit structure alignment

FAST alignment (Normalized score: 2.56 Raw score:503.90)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d1e42a1        1 ------------------------------------------------------------      1

Query         61 TLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDEGV    120
d1e42a1        1 ---------------------------------------------------------GGY      3

Query        121 IVET----EIDLSELPHVQKQFP-HHAVVRMTYTIKENTLFKHATVMNKGKEA-FPWGIG    174
d1e42a1        4 VA--PKAVWLPAVK---------AKGLEISGTFTHRQGHIYMEMNFTNKALQHMTDFAIQ     52

Query        175 YHTTFIFPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVFLS    234
d1e42a1       53 F-----------------------------------------------------------     53

Query        235 SYQKRGGENQAVIYHQHAHISIIYKADEQFKHWVVYNADGKQGYLCPEPYTWVTNAVNLD    294
d1e42a1       54 ------------------------------------------------------------     54

Query        295 LPSSLTG---------------LQVLEPGEETTAKSSITIELN-----------------    322
d1e42a1       54 -------NKNSFGVIPSTPLAIHTPLMPNQSIDVSLPLN----TLGPVMKMEPLNNLQVA    102

Query        323 ------------------    323
d1e42a1      103 VKNNIDVFYFSCLIPLNV    120

hit structure alignment

TMalign alignment (TM-score: 0.21 Raw score:68.14)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d1e42a1        1 ------------------------------------------------------------      1

Query         61 TLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDEGV    120
d1e42a1        1 ---------------------------------------------------------GGY      3

Query        121 IV-ETE-IDLSELPHVQKQFPHHAVVRMTYTIKENTLFKHATVMNKGKEAFPWGIGYHTT    178
d1e42a1        4 VAPKAVWLPAV-K--A---K--GLEISGTFTHRQGHIYMEMNFTNKALQHMTDFAIQFNK     55

Query        179 FIFPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVFLSSYQK    238
d1e42a1       56 NSF---------------------------------------------------------     58

Query        239 RGGENQAVIYHQHAHISIIYKADEQFKHWVVYNADGKQGYLCPEPYTWVTNAVNLDLPSS    298
d1e42a1       59 --------G--------VIPST---P--------------------LA------------     67

Query        299 LTGLQVLEPGEET-TAKSSITI---------------------------------ELN    322
d1e42a1       68 --IHTPLMPNQSIDVSLPLNTLGPVMKMEPLNNLQVAVKNNIDVFYFSCLIPLNV---    120

hit structure alignment

HHsearch alignment (Probability: 0.13 E-value:0.01)

DALI match       ****************************
Query        142 AVVRMTYTIKENTLFKHATVMNKGKEAF    169
d1e42a1       19 LEISGTFTHRQGHIYMEMNFTNKALQHM     46

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40: d1j0ma2 Xanthan lyase (svm: 0.891)

SCOP Superfamily: Hyaluronate lyase-like, C-terminal domain | SCOP Fold: Hyaluronate lyase-like, C-terminal domain | SCOP Class: All beta proteins

Consensus: 0.43 Contact: 804
Modified z-scores:
dali:0.95 daliz:0.94 gdtts:0.95 tmscore:0.97 rmsd:0.41 AHM:0.45 LBcontacta:0.96 LBcontactb:0.94 LHM:0.20
id:0.96 blosum:0.19 compass:0.54 pearson:0.96
Scaled scores:
dali:0.72 daliz:0.38 gdtts:0.52 tmscore:0.57 rmsd:0.77 AHM:0.68 LBcontacta:0.62 LBcontactb:0.67 LHM:0.36
id:0.04 blosum:0.05 compass:0.10 pearson:0.14

hit structure alignment

DALI alignment (Z-score: 3.1 Raw score:341.90)

Query          1 anfIEKI---tylgtpAIKAGnehlEMIV------vpewGSNVislvdkttnvqllrepe     51
d1j0ma2        1 --pAIEIvvntsgvqsVKEKT----LGLVganfwtdttqTADL-----------------     37

Query         52 taesfhdtptlygIPILFppnrisdgtfsfrgrtyhfdinekdkhnhlhgflyhekwnvv    111
d1j0ma2       38 -------------ITSNK------------------------------------------     42

Query        112 ttkqtdegviveteidlselphvqkqfphhaVVRMTYTIKE-NTLFKHATVMNkgkeafP    170
d1j0ma2       43 -------------------------------KASVMTREIAdERLEASVSDPT---qanN     68

Query        171 WGIGYHTTFifpaesslfsltadqqwelderllptgklmdvpykealhegmdlrhkqldd    230
d1j0ma2       69 GTIAIELAR---------------------------------------------------     77

Query        231 vflssyqkrggenqaviyhqhahisIIYKADEQFkHWVVynadgkqgyLCPEPYTWvtna    290
d1j0ma2       78 -----------------------saEGYSADPGI-TVTQ-------laPTIKFTVN----    102

Query        291 vnldlpssltgLQVLepgEETTAKSSITIEln    322
d1j0ma2      103 -----------VNGA---KGKSFHASFQLG--    118

hit structure alignment

FAST alignment (Normalized score: 2.90 Raw score:565.90)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d1j0ma2        1 ------------------------------------------------------------      1

Query         61 TLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNV----------    110
d1j0ma2        1 --------------------------------------------------PAIEIVVNTS     10

Query        111 ---VTTKQTD-EGVIVETEIDLSELPHVQKQFPHH--------------AVVRMTYTIK-    151
d1j0ma2       11 GVQSVKE---KTLGLVGANF---------------WTDTTQTADLITSNKKASVMTREIA     52

Query        152 ENTLFKHATVMNKGKEAF-----PWGIGYHTTFIFPAESSLFSLTADQQWELDERLLPTG    206
d1j0ma2       53 DERLEASVSD--------PTQANNGTIAIEL-----------------------------     75

Query        207 KLMDVPYKEALHEGMDLRHKQLDDVFLSSYQKRGGENQAVIYHQHAHIS----IIYKADE    262
d1j0ma2       76 -------------------------------------------------ARSAEGYSADP     86

Query        263 QFKHWVVYNADGKQGY------LCPEPYTWVTNAVNLDLPSSLTGLQVLEPG------EE    310
d1j0ma2       87 GI--------------TVTQLAPTIKFT------------------------VNVNGAKG    108

Query        311 TTAKSSITIELN--    322
d1j0ma2      109 KSFHASFQ----LG    118

hit structure alignment

TMalign alignment (TM-score: 0.25 Raw score:81.36)

Query          1 ANFIEKITY--LGTPAIKAGNEHLEMIVVPEW-GSNVISLVDKTTNVQLLREPETAESFH     57
d1j0ma2        1 -PAIEIVVNTS--GVQSVKEKTLGLVGANFWTDTTQTADL--------------------     37

Query         58 DTPTLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTD    117
d1j0ma2       38 ------ITSN-----------------------------------K--------------     42

Query        118 EGVIVETEIDLSELPHVQKQFPHHAVVRMTYTIKEN----TLFKHAT-VMNKGKEAFPWG    172
d1j0ma2       43 --------K------------------ASVMTR-EIADERLEASVSDPTQA------NNG     69

Query        173 IGYHTTFIFPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVF    232
d1j0ma2       70 TIAIELARS---------------------------------------------------     78

Query        233 LSSYQKRGGENQAVIYHQHAHISIIYKADEQFKHWVVYNADGKQGYLCPEPYTWVTNAVN    292
d1j0ma2       79 --------------AE--------GYSADPGI-TVTQLA------PTIKFTVNV------    103

Query        293 LDLPSSLTGLQVLEPGEETTAKSSITIELN    322
d1j0ma2      104 ----------N-G---AKGKSFHASFQL-G    118

hit structure alignment

HHsearch alignment (Probability: 0.03 E-value:0.09)

DALI match                                                  
Query        104 YHEKWNVVTTKQTDEGVIVETEIDLSELPHVQKQFPHHAVVRM    146
d1j0ma2       75 LARSAEGYSADPGITVTQLAPTIKFTVNVNGAKGKSFHASFQL    117

hit structures.

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41: d1p4ua_ ADP-ribosylation factor binding protein Gga3 domain (svm: 0.866)

SCOP Superfamily: Clathrin adaptor appendage domain | SCOP Fold: Immunoglobulin-like beta-sandwich | SCOP Class: All beta proteins

Consensus: 0.00 Contact: 622
Modified z-scores:
dali:0.94 daliz:0.96 gdtts:0.93 tmscore:0.94 rmsd:0.33 AHM:0.39 LBcontacta:0.92 LBcontactb:0.89 LHM:0.42
id:0.91 blosum:0.67 compass:0.75 pearson:0.99
Scaled scores:
dali:0.81 daliz:0.56 gdtts:0.60 tmscore:0.62 rmsd:0.78 AHM:0.66 LBcontacta:0.66 LBcontactb:0.75 LHM:0.09
id:0.05 blosum:0.11 compass:0.25 pearson:0.28

hit structure alignment

DALI alignment (Z-score: 2.6 Raw score:362.50)

Query          1 anfiekitylgtpaikagnehlemivvpewgsnvislvdkttnvqllrepetaesfhdtp     60
d1p4ua_        1 ------------------------------------------------------------      1

Query         61 tlygipilfppnrisdgtfsfrgrtyhfdinekdkhnhlhgflyhekwnvvttkqtdeGV    120
d1p4ua_        1 -------------------------------------------lslasihvplesikpSS     17

Query        121 IVETE-IDLSelphvqkqfphHAVVRMTYTIK-----ENTLFKHATVMNKGKEAFP-WGI    173
d1p4ua_       18 ALPVTaYDKN-----------GFRILFHFAKEcppgrPDVLVVVVSMLNMAPLPVKsIVL     66

Query        174 GYHTTFifpaesslfsltadqqwelderllptgklmdvpykealhegmdlrhkqlddvfl    233
d1p4ua_       67 QAAAPK------------------------------------------------------     72

Query        234 ssyqkrggenqaviyhqhahiSIIYKADEQfkhwvvynadgkqgylcpepytwvtnavnl    293
d1p4ua_       73 ---------------------SMKVKLQPP------------------------------     81

Query        294 dlpssltglQVLEP------GEETTAKSSITIEL--------------------------    321
d1p4ua_       82 -------sgTELSPfspiqpPAAITQVMLLANPLkekvrlrykltfalgeqlstevgevd    134

Query        322 ----------n    322
d1p4ua_      135 qfppveqwgnl    145

hit structure alignment

FAST alignment (Normalized score: 1.46 Raw score:316.10)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d1p4ua_        1 ------------------------------------------------------------      1

Query         61 TLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFL---------------YH    105
d1p4ua_        1 -------------------------------------------LSLASIHVPLESIKPSS     17

Query        106 EKWNVVTTKQTDE-GVIVETEIDLSELPHVQKQ--------FPHHAVVRMTYTIKEN---    153
d1p4ua_       18 ALPVTAYD-----KNGFRILFHF----------AKECPPGRPDVLVVVVSMLNMAPLPVK     62

Query        154 -------------------------------TLFKHATVMNKGKEAFPWGIGYHTTFIFP    182
d1p4ua_       63 SIVLQAAAPKSMKVKLQPPSGTELSPFSPIQPPAAITQVMLL------------------    104

Query        183 AESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVFLSSYQKRGGE    242
d1p4ua_      105 ------------------------------------------------------------    105

Query        243 NQAVIYHQHAHISIIYKADEQFKHWVVYNADGKQGYLCPEPYTWVTNAVNLDLPSSLTGL    302
d1p4ua_      105 ------------------------------------------------------------    105

Query        303 QVLEPGEETTAKSSITIELN----------------------------------------    322
d1p4ua_      105 --------------------ANPLKEKVRLRYKLTFALGEQLSTEVGEVDQFPPVEQWGN    144

Query        323 -    323
d1p4ua_      145 L    145

hit structure alignment

TMalign alignment (TM-score: 0.21 Raw score:66.37)

Query          1 ANF-IEKITYLGTPA------------------IKAGNEHLEMIVVPEWGSNVISLV---     38
d1p4ua_        1 LSLASIHVPL--ESIKPSSALPVTAYDKNGFRI----------------LFHFAKECPPG     42

Query         39 -DKTTN--VQL-LREPETAESFHDTPTLYGIPILFPPNRISDGTFSFRGRTYHFDINEKD     94
d1p4ua_       43 R----PDV--LV-----------------VVVSMLN---M----A------PLP------     60

Query         95 KHNHLHGF--LYHEKWNVVTTKQTDEGVIVET-E-IDLSELPHVQKQF--------PHHA    142
d1p4ua_       61 -------VKS-----IVLQA-AAPKSMKVKLQPPSGTE-----LS-PFSPIQPPAA----     97

Query        143 VVRMTYTIK-E-NTLFKHATVMNKGKEAFPWGIGYHTTFIFPAESSLFSLTADQQWELDE    200
d1p4ua_       98 ITQVMLLANPLKEKVRLRYKLTFALGE---------------------------------    124

Query        201 RLLPTGKLMDVPYKEALHEGMDLRHKQLDDVFLSSYQKRGGENQAVIYHQHAHISIIYKA    260
d1p4ua_      125 ------------------------------------------------------------    125

Query        261 DEQFKHWVVYNADGKQGYLCPEPYTWVTNAVNLDLPSSLTGLQVLEPGEETTAKSS-ITI    319
d1p4ua_      125 ----------------------------------------------QLSTEVGEVDQFPP    138

Query        320 EL-----N    322
d1p4ua_      139 VEQWGNL-    145

hit structure alignment

HHsearch alignment (Probability: 0.05 E-value:0.04)

DALI match                                
Query        139 PHHAVVRMTYTIKENTLFKHATVMN    163
d1p4ua_      111 KVRLRYKLTFALGEQLSTEVGEVDQ    135

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42: d1t5ra_ Leucocidin S component LukS-PV (svm: 0.878)

SCOP Superfamily: Leukocidin-like | SCOP Fold: Leukocidin-like | SCOP Class: Membrane and cell surface proteins and peptides

Consensus: 0.00 Contact: 652
Modified z-scores:
dali:0.94 daliz:0.96 gdtts:0.94 tmscore:0.95 rmsd:0.36 AHM:0.46 LBcontacta:0.92 LBcontactb:0.90 LHM:0.55
id:0.82 blosum:0.28 compass:0.32 pearson:0.86
Scaled scores:
dali:0.81 daliz:0.54 gdtts:0.60 tmscore:0.64 rmsd:0.79 AHM:0.63 LBcontacta:0.66 LBcontactb:0.74 LHM:0.06
id:0.02 blosum:0.04 compass:0.06 pearson:0.11

hit structure alignment

DALI alignment (Z-score: 2.3 Raw score:403.10)

Query          1 anfiekitylgtpaikagnehlemivvpewgsnvislvdkttnvqllrepetaesfhdtp     60
d1t5ra_        1 ------------------------------------------------------------      1

Query         61 tlygipilfppnrisdgtfsfrgrtyhfdinekdkhnhlhgflyhekwnvvTTKQTDeGV    120
d1t5ra_        1 ---------------------------------------------------NIENIG-AE      8

Query        121 IVETEIDLSelphvQKQFPHHAVVRMTYTIKE--NTLFKHATVMNK--------------    164
d1t5ra_        9 VVKRTEDTS-----SDKWGVTQNIQFDFVKDKkyNKDALILKMQGFinskttyynykntd     63

Query        165 ------gkeaFPWGIGYHTTfifpaesslfsltadqqwelderllptgklmdvpykealh    218
d1t5ra_       64 hikamrwpfqYNIGLKTNDP----------------------------------------     83

Query        219 egmdlrhkqlddvflssyqkrggenqaviyhqhahisiIYKADEQ---------------    263
d1t5ra_       84 --------------------------------------NVDLINYlpknkidsvnvsqtl    105

Query        264 -----------------------------fKHWVvynadgkqgylcpePYTW--------    286
d1t5ra_      106 gyniggnfnssfnysktisynqqnyiseveHQNS--------------KSVQwgikansf    151

Query        287 -------------------vtnavnldlpssltglqvlePGEETTAKSSITIE-------    320
d1t5ra_      152 itkmsghdpnlfvgykpysqnprdyfvpdnelpplvhsgFNPSFIATVSHEKGsgdtsef    211

Query        321 ----------------------------------------------------ln    322
d1t5ra_      212 eitygrnmdvthatrrtnsylegsrihnafvnrnytvkyevnwktheikvkghn    265

hit structure alignment

FAST alignment (Normalized score: 0.97 Raw score:283.20)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d1t5ra_        1 ------------------------------------------------------------      1

Query         61 TLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTD---    117
d1t5ra_        1 ---------------------------------------------------------NIE      3

Query        118 --------EGVIVETEIDLSELPHVQKQFPHHAV--VRMTYTIKEN--------------    153
d1t5ra_        4 NIGAEVVKRTEDTSS-------------------DKWGVTQNI---QFDFVKDKKYNKDA     41

Query        154 ---TLFKHATVMNKGKEAFP----------------WGIGYHTTFIFPAESSLFSLTADQ    194
d1t5ra_       42 LILKMQGFINSKTT------YYNYKNTDHIKAMRWPFQYNIGLKTND--PNVD-------     86

Query        195 QWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVFLSSYQKRGGEN-----------    243
d1t5ra_       87 -------------------------------------------------LINYLPKNKID     97

Query        244 ------------------------------------------------------------    244
d1t5ra_       98 SVNVSQTLGYNIGGNFNSSFNYSKTISYNQQNYISEVEHQNSKSVQWGIKANSFITKMSG    157

Query        244 --------------------------------------QAVIYHQ---HAHISIIYKADE    262
d1t5ra_      158 HDPNLFVGYKPYSQNPRDYFVPDNELPPLVHSGFNPSFIATVSH-EKGSGDTSEFEI---    213

Query        263 QFKHWVVYNADGKQGYLCPEPYTWVTNAVNLDLPSSLTGLQVLEPGEET-----------    311
d1t5ra_      214 -------------------------------------------------TYGRNMDVTHA    224

Query        312 -------------------TAKSSITIELN-------------    322
d1t5ra_      225 TRRTNSYLEGSRIHNAFVNRNYTVKYEV--NWKTHEIKVKGHN    265

hit structure alignment

TMalign alignment (TM-score: 0.24 Raw score:76.48)

Query          1 --------ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPET     52
d1t5ra_        1 NIENIGAE----------------------------------------------------      8

Query         53 AESFHDTPTLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVT    112
d1t5ra_        9 -----------------------------------------------------VVKRTED     15

Query        113 TKQTDEGVIVETEIDLSELPHVQKQFPHHAVVRMTYTIK-E-----------------N-    153
d1t5ra_       16 TSSDKWGVTQNIQFDF--VKD-KKYNKDALILKMQGFINSKTTYYNYKNTDHIKAMRWPF     72

Query        154 TLFKHATVMNKGKEAFPWGIGYHT--TFIF------------------------------    181
d1t5ra_       73 QYNIGLKTND---PNVDLINYLPKNKIDSVNVSQTLGYNIGGNFNSSFNYSKTISYNQQN    129

Query        182 ---PAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVFLSSYQ-    237
d1t5ra_      130 YIS--------------------------------------------------EVEHQNS    139

Query        238 ----KRGGENQAVIYHQHA-HISI------------------------------------    256
d1t5ra_      140 KSVQ-----WGIKANSFITKMSGHDPNLFVGYKPYSQNPRDYFVPDNELPPLVHSGFNPS    194

Query        257 IYKADEQFKHWVVYNADGKQGYLCPEPYTWVTNAVNLDLPSSLTGLQVL--EP-GEETTA    313
d1t5ra_      195 --------------------------FIAT---------------VSHEKGSGDTSEFEI    213

Query        314 KSSITIE-L-------------N-----------------------------    322
d1t5ra_      214 TYGRNMDVTHATRRTNSYLEGSRIHNAFVNRNYTVKYEVNWKTHEIKVKGHN    265

hit structure alignment

HHsearch alignment (Probability: 0.07 E-value:0.99)

DALI match                                                                   
Query        109 NVVTTKQTDEGVIVETEIDLSELPHVQKQFPHHAVVRMTYTIKENTLFKHATVMNKGKEA    168
d1t5ra_       86 DLINYLPKNKIDSVNVSQTLGYNIGGNFNSSFNYSKTISY---NQQ-NYISEVEHQNSKS    141

DALI match                                                                   
Query        169 FPWGIGYHTTFIFP-AESSLFSLTADQQWE-LDERLLPTGKLMDVPYKEALHEGMDLRHK    226
d1t5ra_      142 VQWGIKANSFITKMSGHDPNLFVGYKPYSQNPRDYFVPDNELPP------------LVHS    189

DALI match                                                           
Query        227 QLDDVFLSSYQKRGGENQAVIYHQHAHISIIYKADEQFKHWVVYNADGKQGY    278
d1t5ra_      190 GFNPSFIATVSHEKGSGDTSEFEITYGRNMDVTHATRRTNSYLEGSRIHNAF    241

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43: d1nofa1 Glycosyl hydrolase family 5 xylanase (svm: 1.203)

SCOP Superfamily: Glycosyl hydrolase domain | SCOP Fold: Glycosyl hydrolase domain | SCOP Class: All beta proteins

Consensus: 0.53 Contact: 598
Modified z-scores:
dali:0.88 daliz:0.88 gdtts:0.92 tmscore:0.94 rmsd:0.42 AHM:0.47 LBcontacta:0.90 LBcontactb:0.89 LHM:0.30
id:0.83 blosum:0.19 compass:0.29 pearson:0.60
Scaled scores:
dali:0.70 daliz:0.35 gdtts:0.53 tmscore:0.55 rmsd:0.76 AHM:0.68 LBcontacta:0.57 LBcontactb:0.67 LHM:0.27
id:0.01 blosum:0.02 compass:-0.01 pearson:0.00

hit structure alignment

DALI alignment (Z-score: 1.9 Raw score:281.80)

Query          1 anfiekitylgtpaikagnehlemivvpewGSNVISlvdkttnvqllrepetaesfhdtp     60
d1nofa1        1 -----------------------------dTVKIDA------------------------      7

Query         61 tlygipilfppnrisdgtfsfrgrtyhfdinekdkhnhlhgflyhekwnvvtTKQTdEGV    120
d1nofa1        8 --------------------------------------------------nvNYQI-GAL     16

Query        121 IV--eTEIDLselphvqkqfphhaVVRMTYTIK-ENTLFKHATVMNkgkeaFPWGIGYHT    177
d1nofa1       17 RIqatENPQS--------------NVHLTAYKNtDGKMVIVAVNTN-----DSDQMLSLN     57

Query        178 Tfifpaesslfsltadqqwelderllptgklmdvpykealhegmdlrhkqlddvflssyq    237
d1nofa1       58 I-----------------------------------------------------------     58

Query        238 krggenqaviyhqhahisIIYKAD--------EQFKhwvvynadgkqgYLCPEPYTwvtn    289
d1nofa1       59 -------------snanvTKFEKYstsaslnvEYGG-------ssqvdSSGKATVW----     94

Query        290 avnldlpssltglqvlepgeETTAKSSITieln    322
d1nofa1       95 -----------------lnpLSVTTFVSK----    106

hit structure alignment

FAST alignment (Normalized score: 2.41 Raw score:445.60)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d1nofa1        1 ------------------------------------------------------------      1

Query         61 TLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEK-------WNVVTT    113
d1nofa1        1 -----------------------------------------------DTVKIDANVNYQ-     12

Query        114 KQTDEG-VIVETEIDLSELPHVQKQFP--------HHAVVRMTYTIKEN-TLFKHATVMN    163
d1nofa1       13 ------IGALR----------------IQATENPQSNVHLTAYKN----TDGKMVIVAVN     46

Query        164 KGKEAFPWGIGYHTTFIFPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDL    223
d1nofa1       47 TNDSDQMLSLNI------------------------------------------------     58

Query        224 RHKQLDDVFLSSYQKRGGENQAVIYHQHAHISIIYKADEQF-------------------    264
d1nofa1       59 -----------------------------------------SNANVTKFEKYSTSASLNV     77

Query        265 -----KHWVVYNADGKQGYLCPEPYTWVTNAVNLDLPSSLT----GLQVLEPGEETTAKS    315
d1nofa1       78 EYGGSSQVD--------------------------------SSGKATVWLNPLSVTTFV-    104

Query        316 SITIELN--    322
d1nofa1      105 -------SK    106

hit structure alignment

TMalign alignment (TM-score: 0.22 Raw score:71.08)

Query          1 -ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLV--DKTTNVQLLREPETAESFH     57
d1nofa1        1 D------------------------------TVKI-DANVN-------------------     10

Query         58 DTPTLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTD    117
d1nofa1       11 -------------------------------------------------------YQI--     13

Query        118 EGVIV-E-TEIDLSELPHVQKQFPHHAVVRMTYTIKE-NTLFKHATVMNKGKEAFPWGIG    174
d1nofa1       14 GALRIQATENPQS--------------NVHLTAYKNTDGKMVIVAVNTN-----DSDQML     54

Query        175 YHTTFI-FPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVFL    233
d1nofa1       55 SLNISNA-----------------------------------------------------     61

Query        234 SSYQKRGGENQAVIYHQHAHISIIYKAD----------EQFKHWVVYNADGKQGYLCPEP    283
d1nofa1       62 ---------------------NVTKFEKYSTSASLNVEYGGS-SQVD------SSGK-AT     92

Query        284 YTWVTNAVNLDLPSSLTGLQVLEPGEETTAKSSITIELN    322
d1nofa1       93 VWL----------------NPL-----SVTTFVSK----    106

hit structure alignment

HHsearch alignment (Probability: 0.03 E-value:0.16)

DALI match       *********... ........  .  .....
Query        143 VVRMTYTIKENTLFKHATVMNKGKEAFPWGI    173
d1nofa1       27 NVHLTAYKNTDG-KMVIVAVNTNDSDQMLSL     56

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44: d1r4xa1 Coatomer gamma subunit C-terminal domain, first subdomain (svm: 0.877)

SCOP Superfamily: Clathrin adaptor appendage domain | SCOP Fold: Immunoglobulin-like beta-sandwich | SCOP Class: All beta proteins

Consensus: 0.00 Contact: 594
Modified z-scores:
dali:0.92 daliz:0.95 gdtts:0.74 tmscore:0.79 rmsd:0.76 AHM:0.86 LBcontacta:0.92 LBcontactb:0.92 LHM:0.55
id:0.97 blosum:0.69 compass:0.53 pearson:0.96
Scaled scores:
dali:0.80 daliz:0.51 gdtts:0.35 tmscore:0.33 rmsd:0.50 AHM:0.31 LBcontacta:0.65 LBcontactb:0.79 LHM:0.02
id:0.07 blosum:0.11 compass:0.18 pearson:0.19

hit structure alignment

DALI alignment (Z-score: 2.3 Raw score:338.50)

Query          1 anfiekitylGTPAIK-----------agnEHLEmivvpewgsnvislvdkttnvqllre     49
d1r4xa1        1 -----mhhhhHHMTRQeifqeqlaavpefrGLGP--------------------------     29

Query         50 petaesfhdtptlygipilfppnrisdgtfsfrgrtyhfdinekdkhnhlhgflyhekwn    109
d1r4xa1       30 ------------------------------------------------------------     30

Query        110 vvttkqtdeGVIV--ETEIDLSElphvqkqfphHAVVRMTYTIKENTLFKHATVMNKGK-    166
d1r4xa1       30 --------lFKSSpePVALTESE---------tEYVIRCTKHTFTNHMVFQFDCTNTLNd     72

Query        167 EAFP-wGIGYHTTFifpaesslfsltadqqwelderllptgklmdvpykealhegmdlrh    225
d1r4xa1       73 QTLEnvTVQMEPTE----------------------------------------------     86

Query        226 kqlddvflssyqkrggenqaviyhqhahiSIIYKADeqfkhwvvynadgkqgylcpepyt    285
d1r4xa1       87 -----------------------------AYEVLXY------------------------     93

Query        286 wvtnavnldlpssltglQVLEPGEETTAKSSITIELN-----------------------    322
d1r4xa1       94 --------------vpaRSLPYNQPGTCYTLVALPKEdptavactfscmmkftvkdcdpt    139

Query        323 ------------------------    323
d1r4xa1      140 tgetddegyedeyvledlevtvad    163

hit structure alignment

FAST alignment (Normalized score: 1.07 Raw score:244.30)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d1r4xa1        1 ------------------------------------------------------------      1

Query         61 TLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVV---------    111
d1r4xa1        1 ---------------------------------------------------MHHHHHHMT      9

Query        112 ----------------------------TTKQT---DEGVIVETEIDLSELPHVQKQFP-    139
d1r4xa1       10 RQEIFQEQLAAVPEFRGLGPLFKSSPEPVALT-ESETEYVIRCTKHT------------F     56

Query        140 HHAVVRMTYTIKE----------------------------------NTLFKHATVMNKG    165
d1r4xa1       57 TNHMVFQFDCT--NTLNDQTLENVTVQMEPTEAYEVLXYVPARSLPYNQPGTCYTLVA--    112

Query        166 KEAFPWGIGYH-------------------TTFIFPAESSLFSLTADQQWELDERLLPTG    206
d1r4xa1      113 -----------LPKEDPTAVACTFSCMMKFTVKDCDPTTGE-------------------    142

Query        207 KLMDVPYKEALHEGMDLRHKQLDDVFLSSYQKRGGENQAVIYHQHAHISIIYKADEQFKH    266
d1r4xa1      143 ------------------------------------------------------------    143

Query        267 WVVYNADGKQGYLCPEPYTWVTNAVNLDLPSSLTGLQVLEPGEETTAKSSITIELN----    322
d1r4xa1      143 --------------------------------------------------------TDDE    146

Query        323 -----------------    323
d1r4xa1      147 GYEDEYVLEDLEVTVAD    163

hit structure alignment

TMalign alignment (TM-score: 0.20 Raw score:64.11)

Query          1 -------------ANFIEKITYLG--T-----PAIK--AGNEHLEMIV------------     26
d1r4xa1        1 MHHHHHHMTRQEI--------FQEQLAAVPEFRGLGPL-------FKSSPEPVALTESET     45

Query         27 -----VPEWGSNVISLV---DKTTNVQLLREPETAESFHDTPTLYGIPILFPPNRISDGT     78
d1r4xa1       46 EYVIR-----CTKHTFTNHM-------------------------VFQFDCTN-------     68

Query         79 FSFRGRTY---HFDINEKDKHNHLHGFLYHEKWN------VVTTKQTDEGVIV-ETEIDL    128
d1r4xa1       69 TLN--DQTLEN---------------------VTVQMEPT--------EAYEVLXYVPAR     97

Query        129 SELPHVQKQF-PHHAVVRMTYTIK-----ENTLFKHATVMNKGKEA----------FPWG    172
d1r4xa1       98 S----LPYNQP---GTCYTLVALPKEDPTAVACTFSCMMKFTVKDCDPTTGETDDE----    146

Query        173 IGYHTTFIFPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVF    232
d1r4xa1      147 ------------------------------------------------------------    147

Query        233 LSSYQKRGGENQAVIYHQHAHISIIYKADEQFKHWVVYNADGKQGYLCPEPYTWVTNAVN    292
d1r4xa1      147 ------------------------------------------------------------    147

Query        293 LDLPSSLTGLQVLEPGEETTA-KSSITIE-LN    322
d1r4xa1      147 -------------GYEDEYVLEDLEVTVAD--    163

hit structure alignment

HHsearch alignment (Probability: 0.03 E-value:0.14)

DALI match       ************************
Query        141 HAVVRMTYTIKENTLFKHATVMNK    164
d1r4xa1       46 EYVIRCTKHTFTNHMVFQFDCTNT     69

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45: d1uasa1 Melibiase (svm: 1.240)

SCOP Superfamily: Glycosyl hydrolase domain | SCOP Fold: Glycosyl hydrolase domain | SCOP Class: All beta proteins

Consensus: 0.56 Contact: 613
Modified z-scores:
dali:0.92 daliz:0.95 gdtts:0.95 tmscore:0.95 rmsd:0.36 AHM:0.44 LBcontacta:0.93 LBcontactb:0.90 LHM:0.30
id:0.77 blosum:0.17 compass:0.32 pearson:0.93
Scaled scores:
dali:0.77 daliz:0.49 gdtts:0.62 tmscore:0.64 rmsd:0.78 AHM:0.65 LBcontacta:0.67 LBcontactb:0.76 LHM:0.21
id:0.02 blosum:0.01 compass:0.13 pearson:0.16

hit structure alignment

DALI alignment (Z-score: 2.9 Raw score:311.30)

Query          1 anfiekitylgtpaikagnehlemivvpewgsnvislvdkttnvqllrepetaesfhdtp     60
d1uasa1        1 ------------------------------------------------------------      1

Query         61 tlygipilfppnrisdgtfsfrgrtyhfdinekdkhnhlhgflyhekwnvvttkqtdeGV    120
d1uasa1        1 ----------------------------------------------------------LG      2

Query        121 IVETE-IDLSelphvqkqfphHAVVRMTYTIkenTLFKHATVMNKGKEAFPWGIGY----    175
d1uasa1        3 VQGKKvQSDN-----------GLEVWAGPLS---NNRKAVVLWNRQSYQATITAHWsnig     48

Query        176 HTTFifpaesslfsltadqqwelderllptgklmdvpykealhegmdlrhkqlddvflss    235
d1uasa1       49 LAGS--------------------------------------------------------     52

Query        236 yqkrggenqaviyhqhahisiiYKADEQfkhwvvynadgkqgylcpEPYTwvtnavnldl    295
d1uasa1       53 --------------------vaVTARDL----------wahssfaaQGQI----------     72

Query        296 pssltglQVLEPGEETTAKSSITieln    322
d1uasa1       73 ------sASVAPHDCKMYVLTPN----     89

hit structure alignment

FAST alignment (Normalized score: 2.49 Raw score:421.70)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d1uasa1        1 ------------------------------------------------------------      1

Query         61 TLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDEGV    120
d1uasa1        1 ----------------------------------------------------------LG      2

Query        121 IVETEIDLSELPHVQKQFP-----HHAVVRMTYTIKEN-TLFKHATVMNKGKEAFPWGIG    174
d1uasa1        3 VQGK---------------KVQSDNGLEVWAGPL----SNNRKAVVLWNRQSYQATITAH     43

Query        175 YHTTFIFPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVFLS    234
d1uasa1       44 ------------------------------------------------------------     44

Query        235 SYQKRGGENQAVIYHQHAHISIIYKADEQFKHWVVYNADGKQGYLCPEPYTWVTNAVNLD    294
d1uasa1       44 ------------------------------------------------------------     44

Query        295 LPSSLT----------------------------GLQVLEPGEETTAKSSITIELN--    322
d1uasa1       44 ------WSNIGLAGSVAVTARDLWAHSSFAAQGQISASVAPHDCKMYVLT------PN     89

hit structure alignment

TMalign alignment (TM-score: 0.18 Raw score:57.90)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d1uasa1        1 ------------------------------------------------------------      1

Query         61 TLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDEGV    120
d1uasa1        1 -----------------------------------------L--GVQGKKVQSDN----G     13

Query        121 IVETEIDLSELPHVQKQFPHHAVVRMTYTIKENTLFKHATV----MNKGKEAFPWGIGYH    176
d1uasa1       14 LEVWAG-P--L--S--NN---RKAVVLWNRQSYQATITAHWSNIGLAG---SVAVTARDL     60

Query        177 TTFIFPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVFLSSY    236
d1uasa1       61 W-----------------------------------------------------------     61

Query        237 QKRGGENQAVIYHQHAHISIIYKADEQFKHWVVYNADGKQGYLCPEPYTWVTNAVNLDLP    296
d1uasa1       62 --------------------------------------------AHSSFA----------     67

Query        297 SSLTGLQVLEPGEETTAKSSITI-----------ELN    322
d1uasa1       68 ------A-Q-----GQISASVAPHDCKMYVLTPN---     89

hit structure alignment

HHsearch alignment (Probability: 0.02 E-value:0.39)

DALI match       .......  .. ********************
Query        144 VRMTYTIKENTLFKHATVMNKGKEAFPWGIGY    175
d1uasa1       14 LEVWAGPLSNN-RKAVVLWNRQSYQATITAHW     44

hit structures.

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46: d1m1xa2 Thigh, calf-1 and calf-2 domains of integrin alpha (svm: 0.766)

SCOP Superfamily: Integrin domains | SCOP Fold: Immunoglobulin-like beta-sandwich | SCOP Class: All beta proteins

Consensus: 0.16 Contact: 589
Modified z-scores:
dali:0.84 daliz:0.83 gdtts:0.86 tmscore:0.89 rmsd:0.43 AHM:0.48 LBcontacta:0.90 LBcontactb:0.86 LHM:0.38
id:0.33 blosum:0.03 compass:0.04 pearson:0.33
Scaled scores:
dali:0.71 daliz:0.33 gdtts:0.45 tmscore:0.48 rmsd:0.77 AHM:0.68 LBcontacta:0.56 LBcontactb:0.63 LHM:0.21
id:-0.04 blosum:-0.03 compass:-0.04 pearson:-0.04

hit structure alignment

DALI alignment (Z-score: 1.3 Raw score:241.90)

Query          1 anfiekitylgtpaikagnehlemivvpewgsnvislvdkttnvqllrepetaesfhdtp     60
d1m1xa2        1 ------------------------------------------------------------      1

Query         61 tlygipilfppnrisdgtfsfrgrtyhfdinekdkhnhlhgflyhekwnvvttkqtdegv    120
d1m1xa2        1 ------------------------------------------------------------      1

Query        121 iveteidlselphvqkQFPHHAVVRMTYTIKE--------NTLFKHATVMNKGkeAFPW-    171
d1m1xa2        1 ---------------dNVCKPKLEVSVDSDQKkiyigddnPLTLIVKAQNQGE--GAYEa     43

Query        172 GIGYHTTFifpaesslfsltadqqwelderllptgklmdvpykealhegmdlrhkqlddv    231
d1m1xa2       44 ELIVSIPL----------------------------------------------------     51

Query        232 flssyqkrggenqaviyhqhahisiiykaDEQFKHWVVYNadgkqgyLCPEPYTWvtnav    291
d1m1xa2       52 ---------------qadfigvvrnnealARLSCAFKTEN-------QTRQVVCD-----     84

Query        292 nldlpssltgLQVLEPgEETTAKSSITIELN-----------------------------    322
d1m1xa2       85 ---------lGNPMKA-GTQLLAGLRFSVHQqsemdtsvkfdlqiqssnlfdkvspvvsh    134

Query        323 -----    323
d1m1xa2      135 kvdla    139

hit structure alignment

FAST alignment (Normalized score: 2.46 Raw score:521.50)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d1m1xa2        1 ------------------------------------------------------------      1

Query         61 TLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDEGV    120
d1m1xa2        1 ------------------------------------------------------------      1

Query        121 IVETEIDLSELPHVQKQ---FPHHAVVRMTYTIKE-------NTLFKHATVMNKGKEA--    168
d1m1xa2        1 -----------------DNVCKPKLEVSVDSDQK-KIYIGDDNPLTLIVKAQNQGE--GA     40

Query        169 FPWGIGYHTTFIFPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQL    228
d1m1xa2       41 YEAELIVSI---------------------------------------------------     49

Query        229 DDVFLSSYQKRGGENQAVIYHQHAHI--SIIYKADEQF-------------KHWVVYNAD    273
d1m1xa2       50 --------------------------PLQADFI-----GVVRNNEALARLSCAFKT----     74

Query        274 GKQGY--LCPEPYTWVTNAVNLDLPSSLTGL----QVLEPGEETTAKSSITIELN-----    322
d1m1xa2       75 -----ENQTRQVV------------------CDLGNPMKAGTQLLAGLRFSVH--QQSEM    109

Query        323 ------------------------------    323
d1m1xa2      110 DTSVKFDLQIQSSNLFDKVSPVVSHKVDLA    139

hit structure alignment

TMalign alignment (TM-score: 0.18 Raw score:57.27)

Query          1 ------------------------------------------------ANFIEKITYLGT     12
d1m1xa2        1 DNVCKPKLEVSVDSDQKKIYIGDDNPLTLIVKAQNQGEGAYEAELIVS------------     48

Query         13 PAIKAGNEHLEMIVVPEWGSNVISL-VDKTTNVQLLREPETAESFHDTPTLYGIPILFPP     71
d1m1xa2       49 ------------------------IP-L------QA----------------DFIGVV--     59

Query         72 NRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDEGVIVETEIDLSEL    131
d1m1xa2       60 ------------------------------RN----------------------------     61

Query        132 PHVQKQF-PHHAVVRMTYTIKENTLFKHATVMN----KGKEAFPWGIGYHTTFIFPAESS    186
d1m1xa2       62 --N--EAL---ARLSCAFKTENQTRQVVCDLGNPMKA----GTQLLAGLRFSVHQQS-EM    109

Query        187 LFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVFLSSYQKRGGENQAV    246
d1m1xa2      110 DTSV------------------------------------------------------K-    114

Query        247 IYHQHAHISIIYKAD----------EQFKHWVVYNADGKQGYLCPEPYTWVTNAVNLDLP    296
d1m1xa2      115 -----------FDLQIQSSNLFDKVSPVVSHKVDL--A----------------------    139

Query        297 SSLTGLQVLEPGEETTAKSSITIELN    322
d1m1xa2      140 --------------------------    140

hit structure alignment

HHsearch alignment (Probability: 0.09 E-value:0.02)

DALI match         ............. .....*****
Query        151 KENTLFKHATVMNKGKEAFPWGIGYH    176
d1m1xa2       23 DDNPLTLIVKAQNQGEGAYEAELIVS     48

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47: d1grwa_ Major sperm protein, MSP (svm: 0.858)

SCOP Superfamily: PapD-like | SCOP Fold: Immunoglobulin-like beta-sandwich | SCOP Class: All beta proteins

Consensus: 0.41 Contact: 496
Modified z-scores:
dali:0.85 daliz:0.90 gdtts:0.88 tmscore:0.89 rmsd:0.36 AHM:0.50 LBcontacta:0.84 LBcontactb:0.85 LHM:0.71
id:0.98 blosum:0.77 compass:0.61 pearson:0.92
Scaled scores:
dali:0.78 daliz:0.48 gdtts:0.55 tmscore:0.55 rmsd:0.79 AHM:0.63 LBcontacta:0.58 LBcontactb:0.73 LHM:-0.09
id:0.12 blosum:0.15 compass:0.17 pearson:0.19

hit structure alignment

DALI alignment (Z-score: 1.5 Raw score:250.40)

Query          1 anfiekitylgtpaikagnehlemivvpewgsnvislvdkttnvqllrepetaesfhdtp     60
d1grwa_        1 ------------------------------------------------------------      1

Query         61 tlygipilfppnrisdgtfsfrgrtyhfdinekdkhnhlhgflyhekwnvvttkqtdegv    120
d1grwa_        1 ------------------------------------------------------------      1

Query        121 iveteidlselphvqKQFPHHAVVRM---TYTIKE--NTLFKHATVMNKGKEAFPWGIGY    175
d1grwa_        1 ---------------SVPPGDIQTQPgtkIVFNAPydDKHTYHIKVINSSARRIGYGIKT     45

Query        176 HTtfifpaesslfsltadqqwelderllptgklmdvpykealhegmdlrhkqlddvflss    235
d1grwa_       46 TN----------------------------------------------------------     47

Query        236 yqkrggenqaviyhqhahisiiYKADEQFkhwvvynadgkqgylcpepytwvtnavnldl    295
d1grwa_       48 --------------------mkRLGVDPP-------------------------------     56

Query        296 pssltglQVLEPGEETTAKSSITIEL----------------------------------    321
d1grwa_       57 ------cGVLDPKEAVLLAVSCDAFAfgqedtnndritvewtntpdgaakqfrrewfqgd    110

Query        322 -------------n    322
d1grwa_      111 gmvrrknlpieynp    124

hit structure alignment

FAST alignment (Normalized score: 2.46 Raw score:491.80)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d1grwa_        1 ------------------------------------------------------------      1

Query         61 TLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDEGV    120
d1grwa_        1 ------------------------------------------------------------      1

Query        121 IVETEIDLSELPHVQKQF---PHHAVV---RMTYTIKE---NTLFKHATVMNKGKEAFPW    171
d1grwa_        1 ------------------SVPPGDIQTQPGTKIVFNA-PYDDKHTYHIKVINSSARRIGY     41

Query        172 GIGYHTTFIFPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDV    231
d1grwa_       42 GIKT--------------------------------------------------------     45

Query        232 FLSSYQKRGGENQAVIYHQHAHIS---IIYKADEQFKHWVVYNADGKQGYLCPEPYTWVT    288
d1grwa_       46 ------------------------TNMKRLGVD---------------------------     54

Query        289 NAVNLDLPSSLT-GLQVLEPGEETTAKSSITIELN-------------------------    322
d1grwa_       55 ------------PPCGVLDPKEAVLLAVSCDA---FAFGQEDTNNDRITVEWTNTPDGAA     99

Query        323 -------------------------    323
d1grwa_      100 KQFRREWFQGDGMVRRKNLPIEYNP    124

hit structure alignment

TMalign alignment (TM-score: 0.15 Raw score:47.68)

Query          1 -----ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAES     55
d1grwa_        1 SVPPG-------------------------------------------------------      5

Query         56 FHDTPTLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQ    115
d1grwa_        6 ------------------------------------------------------------      6

Query        116 TDEGVIVETEIDLSELPHVQKQFPHHAVVRMTYTIKENTLFKHATVMNKGKEAFPWGIGY    175
d1grwa_        6 ------------------------------------------------------------      6

Query        176 HTTFIFPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHK--------Q    227
d1grwa_        6 ---------------DIQTQ--------------PGTK---------I-VFNAPYDDKHT     26

Query        228 LDDVFLSSYQKRGGENQAVIYHQ---------HAHISIIYKADEQFKHWVVYNADGKQ--    276
d1grwa_       27 YHIKVINS---SARRIGYGIKTTNMKRLGVDP------PCGVLDPKEAVLLAVS-CDAFA     76

Query        277 ----------GYL-CP---------EPYTWVTNAVNLDLPSSLTGLQVLEPGEETTAKSS    316
d1grwa_       77 FGQEDTNNDR--IT-VEWTNTPDGA--------------------------------AKQ    101

Query        317 ITIE-LN----------------    322
d1grwa_      102 FRREWFQGDGMVRRKNLPIEYNP    124

hit structure alignment

HHsearch alignment (Probability: 0.08 E-value:0.03)

DALI match                                             **************
Query        266 HWVVYNADGKQGYLCPEPYTWVTNAVNLDLPSSLTGLQVLEPGEETTAKSSI    317
d1grwa_       40 GYGIKTTNMKR--LGVDPPCG-----------------VLDPKEAVLLAVSC     72

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48: d1j0ha2 Neopullulanase (svm: 1.080)

SCOP Superfamily: Glycosyl hydrolase domain | SCOP Fold: Glycosyl hydrolase domain | SCOP Class: All beta proteins

Consensus: 0.59 Contact: 438
Modified z-scores:
dali:0.82 daliz:0.88 gdtts:0.85 tmscore:0.87 rmsd:0.43 AHM:0.49 LBcontacta:0.88 LBcontactb:0.85 LHM:0.40
id:0.84 blosum:0.14 compass:0.44 pearson:0.59
Scaled scores:
dali:0.75 daliz:0.43 gdtts:0.52 tmscore:0.50 rmsd:0.73 AHM:0.59 LBcontacta:0.64 LBcontactb:0.75 LHM:0.08
id:0.04 blosum:-0.00 compass:0.02 pearson:0.01

hit structure alignment

DALI alignment (Z-score: 1.5 Raw score:215.80)

Query          1 anfiekitylgtpaikagnehlemivvpewgsnvislvdkttnvqllrepetaesfhdtp     60
d1j0ha2        1 ------------------------------------------------------------      1

Query         61 tlygipilfppnrisdgtfsfrgrtyhfdinekdkhnhlhgflyhekwnvvttkqtdeGV    120
d1j0ha2        1 ----------------------------------------------------------GE      2

Query        121 IVETEIDLselphvqkqfphhAVVRMTYTIKENTLFKHATVMNkgkeaFPWGIgyhttfi    180
d1j0ha2        3 ISFLHADD------------eMNYLIYKKTDGDETVLVIINRS----dQKADI-------     39

Query        181 fpaesslfsltadqqwelderllptgklmdvpykealhegmdlrhkqlddvflssyqkrg    240
d1j0ha2       40 ------------------------------------------------------------     40

Query        241 genqaviyhqhahiSIIYKADEqfkhwvvynadgkqgylCPEPYTwvtnavnldlpsslt    300
d1j0ha2       40 -------pipldarGTWLVNLL---------tgerfaaeAETLCT---------------     68

Query        301 glqvlepgEETTAKSSITIEln    322
d1j0ha2       69 -----slpPYGFVLYAIEHW--     83

hit structure alignment

FAST alignment (Normalized score: 2.97 Raw score:485.60)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d1j0ha2        1 ------------------------------------------------------------      1

Query         61 TLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDEGV    120
d1j0ha2        1 ------------------------------------------------------------      1

Query        121 IVETEIDLSELPHVQKQFP----HHAVVRMTYTIKENT-LFKHATVMNKGKEAFPWGIGY    175
d1j0ha2        1 GEISFLH------------ADDEMNYLIYKKTD-----GDETVLVIINRSDQKADIPIPL     43

Query        176 HTTFIFPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVFLSS    235
d1j0ha2       44 DA----------------------------------------------------------     45

Query        236 YQKRGGENQAVIYHQHAHISIIYKADEQFKHWVVYNADGKQGYLCPEPYTWVTNAVNLDL    295
d1j0ha2       46 --------------------RGTWL-----------------------------------     50

Query        296 PSSLT---------------GLQVLEPGEETTAKSSITIELN-    322
d1j0ha2       51 -----VNLLTGERFAAEAETLCTSLPPYGFVLYAIEH-----W     83

hit structure alignment

TMalign alignment (TM-score: 0.19 Raw score:61.87)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d1j0ha2        1 ------------------------------------------------------------      1

Query         61 TLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDEGV    120
d1j0ha2        1 ----------------------------------------------------------GE      2

Query        121 IVETE---IDLSELPHVQKQFPHHAVVRMTYTIKENTLFKHATVMNKGKEAFPWGIGY-H    176
d1j0ha2        3 ISFLHADDEM---------------NYLIYKKTDGDETVLVIINRS----DQKADIPIPL     43

Query        177 TTFIFPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVFLSSY    236
d1j0ha2       44 DARG--------------------------------------------------------     47

Query        237 QKRGGENQAVIYHQHAHISIIYKA-DEQFK-HWVVYNADGKQGYLCP--EPYTWVTNAVN    292
d1j0ha2       48 -------------------TWLVNLLT-GER-F-A---------AEAETLCTS-------     69

Query        293 LDLPSSLTGLQVLEPGEETTAKSSITIELN    322
d1j0ha2       70 ---------LP-P----YGFVLYAIEHW--     83

hit structure alignment

HHsearch alignment (Probability: 0.05 E-value:0.03)

DALI match                                       
Query          7 ITYLGTPAIKAGNEHLEMIVVPEWGSNVISLV     38
d1j0ha2       51 VNLLTGERFAAEAETLCTSLPP-YGFVLYAIE     81

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49: d1ex0a3 Transglutaminase, two C-terminal domains (svm: 0.876)

SCOP Superfamily: Transglutaminase, two C-terminal domains | SCOP Fold: Immunoglobulin-like beta-sandwich | SCOP Class: All beta proteins

Consensus: 0.00 Contact: 410
Modified z-scores:
dali:0.84 daliz:0.92 gdtts:0.91 tmscore:0.90 rmsd:0.32 AHM:0.40 LBcontacta:0.89 LBcontactb:0.84 LHM:0.47
id:0.68 blosum:0.50 compass:0.64 pearson:0.95
Scaled scores:
dali:0.82 daliz:0.57 gdtts:0.68 tmscore:0.65 rmsd:0.83 AHM:0.72 LBcontacta:0.75 LBcontactb:0.79 LHM:0.14
id:0.01 blosum:0.07 compass:0.24 pearson:0.26

hit structure alignment

DALI alignment (Z-score: 1.8 Raw score:254.30)

Query          1 anfiekitylgtpaikagnehlemivvpewgsnvislvdkttnvqllrepetaesfhdtp     60
d1ex0a3        1 ------------------------------------------------------------      1

Query         61 tlygipilfppnrisdgtfsfrgrtyhfdinekdkhnhlhgflyhekwnvvttkqtdegv    120
d1ex0a3        1 ------------------------------------------------------------      1

Query        121 iveteidlselphvqkqfphhAVVRMTYTIKE---NTLFKHATVMNKGKEAFP-WGIGYH    176
d1ex0a3        1 -------------------tiPEIIIKVRGTQvvgSDMTVTVQFTNPLKETLRnVWVHLD     41

Query        177 TTFifpaesslfsltadqqwelderllptgklmdvpykealhegmdlrhkqlddvflssy    236
d1ex0a3       42 GPG---------------------------------------------------------     44

Query        237 qkrggenqaviyhqhahisiiykadeqfkhwvvynadgkqgylcPEPYTWvtnavnldlp    296
d1ex0a3       45 ------------------------------------------vtRPMKKM----------     52

Query        297 ssltgLQVLEPGEETTAKSSITIE---------------------------ln    322
d1ex0a3       53 -----FREIRPNSTVQWEEVCRPWvsghrkliasmssdslrhvygeldvqiqr    100

hit structure alignment

FAST alignment (Normalized score: 0.84 Raw score:149.90)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d1ex0a3        1 ------------------------------------------------------------      1

Query         61 TLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLY-HEKWNVVTTKQT---    116
d1ex0a3        1 --------------------------------------------TIPEI--IIKVRGTQV     14

Query        117 --DEGVIVETEIDLSELPHVQKQFPH------HAVVRMTYTIKENT---LFKHATVMNKG    165
d1ex0a3       15 VGSDMTVTVQFTN-------------PLKETLRNVWVHLDG-----PGVTRPMKKMF---     53

Query        166 KEAFPWGIGYHTTFIFPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRH    225
d1ex0a3       54 ------------------------------------------------------------     54

Query        226 KQLDDVFLSSYQKRGGENQAVIYHQHAHISIIYKADEQFKHWVVYNADGKQGYLCPEPYT    285
d1ex0a3       54 ------------------------------------------------------------     54

Query        286 WVTNAVNLDLPSSLTGLQVLEPGEETTAKSSITIELN-----------------------    322
d1ex0a3       54 -------------------------------------REIRPNSTVQWEEVCRPWVSGHR     76

Query        323 ------------------------    323
d1ex0a3       77 KLIASMSSDSLRHVYGELDVQIQR    100

hit structure alignment

TMalign alignment (TM-score: 0.17 Raw score:54.21)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLL-REPETAESFHDT     59
d1ex0a3        1 ---------------------T----------------I------PEI------------      5

Query         60 PTLYGI-PILFPPNR---------ISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWN    109
d1ex0a3        6 -----II--K--VRGTQVVGSDMT------------------------------------     20

Query        110 VVTTKQTDEGVIVETEIDLSELPHVQKQFPHHAVVRMTYTIKENTLFKHATVMNKGKEAF    169
d1ex0a3       21 ------------------------------------------------------------     21

Query        170 PWGIGYHTTFI----FPAESSLFSLT----ADQQWELDERLLPTGKLMDVPYKEALHEGM    221
d1ex0a3       21 ----VTVQFTNPLKETL-RNVWVHLDGPGVTR-----------------------PM-KK     51

Query        222 DLR-------HKQLDDVFLSSYQK--RGGENQAVIYHQHAHISIIYKADEQFKHWVVYNA    272
d1ex0a3       52 MFREIRPNST--VQWEEVCRPWVSGH--RKLIASMSSDSL-RHVYGELDVQ-I-------     98

Query        273 DGKQGYLCPEPYTWVTNAVNLDLPSSLTGLQVLEPGEETTAKSSITIELN    322
d1ex0a3       99 -------------------------QR-----------------------    100

hit structure alignment

HHsearch alignment (Probability: 0.05 E-value:0.02)

DALI match       **************
Query        305 LEPGEETTAKSSIT    318
d1ex0a3       56 IRPNSTVQWEEVCR     69

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50: d1uoka1 Oligo-1,6-glucosidase (svm: 1.258)

SCOP Superfamily: Glycosyl hydrolase domain | SCOP Fold: Glycosyl hydrolase domain | SCOP Class: All beta proteins

Consensus: 0.10 Contact: 469
Modified z-scores:
dali:0.84 daliz:0.89 gdtts:0.88 tmscore:0.89 rmsd:0.38 AHM:0.42 LBcontacta:0.88 LBcontactb:0.85 LHM:0.40
id:0.56 blosum:0.09 compass:0.14 pearson:0.54
Scaled scores:
dali:0.73 daliz:0.42 gdtts:0.54 tmscore:0.52 rmsd:0.75 AHM:0.64 LBcontacta:0.61 LBcontactb:0.73 LHM:0.11
id:-0.02 blosum:-0.04 compass:0.01 pearson:0.02

hit structure alignment

DALI alignment (Z-score: 1.8 Raw score:238.60)

Query          1 anfiekitylgtpaikagnehlemivvpewgsnvislvdkttnvqllrepetaesfhdtp     60
d1uoka1        1 ------------------------------------------------------------      1

Query         61 tlygipilfppnrisdgtfsfrgrtyhfdinekdkhnhlhgflyhekwnvvttkqtdeGV    120
d1uoka1        1 ----------------------------------------------------------GS      2

Query        121 IVET-EIDLselphvqkqfphhaVVRMTYTIKENTLFKHATVMNkgkeaFPWGIGYHTTf    179
d1uoka1        3 YDLIlENNP--------------SIFAYVRTYGVEKLLVIANFT----aEECIFELPED-     43

Query        180 ifpaesslfsltadqqwelderllptgklmdvpykealhegmdlrhkqlddvflssyqkr    239
d1uoka1       44 ------------------------------------------------------------     44

Query        240 ggenqaviyhqhahisIIYKADEQfkhwvvynadgkqgylcPEPYTWvtnavnldlpssl    299
d1uoka1       44 -------------isySEVELLIH----------nydvengPIENIT-------------     67

Query        300 tglqvlepgeETTAKSSITieln    322
d1uoka1       68 -------lrpYEAMVFKLK----     79

hit structure alignment

FAST alignment (Normalized score: 2.46 Raw score:392.10)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d1uoka1        1 ------------------------------------------------------------      1

Query         61 TLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDEGV    120
d1uoka1        1 ------------------------------------------------------------      1

Query        121 IVETEIDLSELPHVQKQFP-----HHAVVRMTYTIKENTLFKHATVMNKGKEAFPWGIGY    175
d1uoka1        1 GSYDL--------------ILENNPSIFAYVRT--YGV--EKLLVIANFTAEECIFEL--     40

Query        176 HTTFIFPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVFLSS    235
d1uoka1       41 ------------------------------------------------------------     41

Query        236 YQKRGGENQAVIYHQHAHIS------IIYKADEQFKHWVVYNADGKQGYLCPEPYTWVTN    289
d1uoka1       41 --------------------PEDISYSEVEL-----------------------------     51

Query        290 AVNLDLPSSLT------------GLQVLEPGEETTAKSSITIELN--    322
d1uoka1       52 -----------LIHNYDVENGPIENITLRPYEAMVFK--------LK     79

hit structure alignment

TMalign alignment (TM-score: 0.13 Raw score:42.02)

Query          1 ANFIEKITY-LG--TPAIKAGNEHLEMIVVPEW-------GSNVIS----LVDKTTNVQL     46
d1uoka1        1 -GSYDLILEN-NPSIFAYVRTYGVEKLLVIANFTAEECIF----ELPEDI------SYSE     48

Query         47 L------------REPETAESFHDTPTLYGIPILFPPNRISDGTFSFRGRTYHFDINEKD     94
d1uoka1       49 VELLIHNYDVENGPIEN----IT--L----------------------------------     68

Query         95 KHNHLHGFLYHEKWNVVTTKQTDEGVIVETEIDLSELPHVQKQFPHHAVVRMTY-TIKEN    153
d1uoka1       69 ----------RPYE---------------A---------------------M-VF-----     76

Query        154 TLFKHATVMNKGKEAFPWGIGYHTTFIFPAESSLFSLTADQQWELDERLLPTGKLMDVPY    213
d1uoka1       77 -K----------------------------------------------------------     77

Query        214 KEALHEGMDLRHKQLDDVFLSSYQKRGGENQAVIYHQHAHISIIYKADEQFKHWVVYNAD    273
d1uoka1       78 ------------------------------------------------------------     78

Query        274 GKQGYLCPEPYTWVTNAVNLDLPSSLTGLQVLEPGEETTAKSSITIELN    322
d1uoka1       78 -------------------------------------------L-K---     79

hit structure alignment

HHsearch alignment (Probability: 0.02 E-value:0.16)

DALI match       .....   . .....
Query        159 ATVMNKGKEAFPWGI    173
d1uoka1       26 LVIANFTAEECIFEL     40

hit structures.

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51: d1vjja3 Transglutaminase, two C-terminal domains (svm: 0.876)

SCOP Superfamily: Transglutaminase, two C-terminal domains | SCOP Fold: Immunoglobulin-like beta-sandwich | SCOP Class: All beta proteins

Consensus: 0.00 Contact: 407
Modified z-scores:
dali:0.85 daliz:0.93 gdtts:0.91 tmscore:0.91 rmsd:0.27 AHM:0.33 LBcontacta:0.88 LBcontactb:0.84 LHM:0.48
id:0.83 blosum:0.51 compass:0.61 pearson:0.93
Scaled scores:
dali:0.83 daliz:0.60 gdtts:0.68 tmscore:0.67 rmsd:0.86 AHM:0.74 LBcontacta:0.72 LBcontactb:0.78 LHM:0.07
id:0.05 blosum:0.09 compass:0.23 pearson:0.23

hit structure alignment

DALI alignment (Z-score: 1.9 Raw score:254.30)

Query          1 anfiekitylgtpaikagnehlemivvpewgsnvislvdkttnvqllrepetaesfhdtp     60
d1vjja3        1 ------------------------------------------------------------      1

Query         61 tlygipilfppnrisdgtfsfrgrtyhfdinekdkhnhlhgflyhekwnvvttkqtdegv    120
d1vjja3        1 ------------------------------------------------------------      1

Query        121 iveteidlselphvqkqfphhAVVRMTYTIK---eNTLFKHATVMNKGKEAFP-WGIGYH    176
d1vjja3        1 ---------------------PTLTLEVLNEarvrKPVNVQMLFSNPLDEPVRdCVLMVE     39

Query        177 TTFifpaesslfsltadqqwelderllptgklmdvpykealhegmdlrhkqlddvflssy    236
d1vjja3       40 GSG---------------------------------------------------------     42

Query        237 qkrggenqaviyhqhahisiiykadeqfkhwvvynadgkqgylCPEPYTWvtnavnldlp    296
d1vjja3       43 -----------------------------------------llLGNLKID----------     51

Query        297 ssltglQVLEPGEETTAKSSITI---------------------------eln    322
d1vjja3       52 -----vPTLGPKERSRVRFDILPsrsgtkqlladfscnkfpaikamlsidvae     99

hit structure alignment

FAST alignment (Normalized score: 0.79 Raw score:141.40)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d1vjja3        1 ------------------------------------------------------------      1

Query         61 TLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDEGV    120
d1vjja3        1 ------------------------------------------------------------      1

Query        121 IVETEIDLSELPHVQKQFPHHAVVRMTYTIKE----------------------------    152
d1vjja3        1 --------------------------------PTLTLEVLNEARVRKPVNVQMLFSNPLD     28

Query        153 -----------------NTLFKHATVMNKGKEA----FPWGIGYHTTFIFPAE-SSLFSL    190
d1vjja3       29 EPVRDCVLMVEGSGLLLGNLKIDV---------PTLGPKERSRVRFDILPSRSGTKQLLA     79

Query        191 TADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVFLSSYQKR------GGENQ    244
d1vjja3       80 -------------------------------------------------DFSCNKFPAIK     90

Query        245 AVIYHQHAHISIIYKADEQFKHWVVYNADGKQGYLCPEPYTWVTNAVNLDLPSSLTGLQV    304
d1vjja3       91 AMLSI-------------------------------------------------------     95

Query        305 LEPGEETTAKSSITIELN----    322
d1vjja3       96 ------------------DVAE     99

hit structure alignment

TMalign alignment (TM-score: 0.13 Raw score:42.77)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d1vjja3        1 ------------------------------------------------------------      1

Query         61 TLYGIPILFPPNRISDGTFSF-------RGRTYHFDINEKDKHNHLH-------------    100
d1vjja3        1 -PT--L-T--LEVL----NEARVRKPVN---------------VQMLFSNPLDEPVRDCV     35

Query        101 ---GFLYHEKWNVVTTKQTDEGVIVETEIDLSELPHVQKQFPHHAVVRMTYTIKENTLFK    157
d1vjja3       36 LMV---------------------------------------------------------     38

Query        158 HATVMNKGKEAFPWGIGYHTTFIFPAESSLFSLTA---DQQWEL------------DERL    202
d1vjja3       39 --------------------------------EGSGLLLGNLKIDVPTLGPKERSR--VR     64

Query        203 LPTGKLMDVPYKEALHEGMDLRHKQLDDVFLSSYQ-KRGGENQAVIYHQHAHISIIYKAD    261
d1vjja3       65 FDILPS----------------------------RS------------------------     72

Query        262 EQFKHWVVYNADGKQGYLCPEPYTWVTNAVNLDLPSSLTGLQVLEPGEETTAKSSITIEL    321
d1vjja3       73 GTKQLLADFS--CNKFPAIKAMLSI---D------VAE----------------------     99

Query        322 N    322
d1vjja3      100 -    100

hit structure alignment

HHsearch alignment (Probability: 0.05 E-value:0.02)

DALI match       **************
Query        305 LEPGEETTAKSSIT    318
d1vjja3       55 LGPKERSRVRFDIL     68

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52: d1p5va1 Chaperone protein Caf1m (svm: 0.654)

SCOP Superfamily: PapD-like | SCOP Fold: Immunoglobulin-like beta-sandwich | SCOP Class: All beta proteins

Consensus: 0.00 Contact: 450
Modified z-scores:
dali:0.79 daliz:0.85 gdtts:0.84 tmscore:0.85 rmsd:0.44 AHM:0.53 LBcontacta:0.78 LBcontactb:0.81 LHM:0.74
id:0.56 blosum:0.33 compass:0.63 pearson:0.97
Scaled scores:
dali:0.76 daliz:0.43 gdtts:0.51 tmscore:0.49 rmsd:0.74 AHM:0.63 LBcontacta:0.52 LBcontactb:0.70 LHM:-0.22
id:-0.00 blosum:0.05 compass:0.23 pearson:0.29

hit structure alignment

DALI alignment (Z-score: 1.0 Raw score:218.50)

Query          1 anfiekitylgtpaikagnehlemivvpewgsnvislvdkttnvqllrepetaesfhdtp     60
d1p5va1        1 ------------------------------------------------------------      1

Query         61 tlygipilfppnrisdgtfsfrgrtyhfdinekdkhnhlhgflyhekwnvvttkqtdegv    120
d1p5va1        1 ------------------------------------------------------------      1

Query        121 iveteidlselphvqkqfPHHAVVRM-TYTIKENTLFKHATVMNKGKEAFPWGIGYHTtf    179
d1p5va1        1 --------------faskEYGVTIGEsRIIYPLDAAGVMVSVKNTQDYPVLIQSRIYD--     44

Query        180 ifpaesslfsltadqqwelderllptgklmdvpykealhegmdlrhkqlddvflssyqkr    239
d1p5va1       45 ------------------------------------------------------------     45

Query        240 ggenqaviyhqhahisiiyKADEQFkhwvvynadgkqgylcpepytwvtnavnldlpssl    299
d1p5va1       45 ------------------pFVVTPP-----------------------------------     51

Query        300 tglQVLEPGEETTAKSSI---tIELN----------------------------------    322
d1p5va1       52 --lFRLDAKQQNSLRIAQaggvFPRDkeslkwlcvkgipkdvgvfvqfainncikllvrp    109

Query        323 ---    323
d1p5va1      110 nel    112

hit structure alignment

FAST alignment (Normalized score: 0.83 Raw score:157.90)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d1p5va1        1 ------------------------------------------------------------      1

Query         61 TLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDEGV    120
d1p5va1        1 ------------------------------------------------------------      1

Query        121 IVETEIDLSELPHVQKQF--PHHAVVRMTYTIKENT----------LFKHATVMNKGKE-    167
d1p5va1        1 ------------------FASKEYGVTIGES-----RIIYPLDAAGVMVSVKNT-----Q     32

Query        168 AFPWGIGYHTTFIFPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQ    227
d1p5va1       33 DYPVLIQS----------------------------------------------------     40

Query        228 LDDVFLSSYQKRGGENQAVIYHQH----------------------------------AH    253
d1p5va1       41 ------------------------RIYDPFVVTPPLFRLDAKQQNSLRIAQAGGVFPRDK     76

Query        254 ISIIYKADEQFKHWVVYNADGKQGYLCPEPYTWVTNAVNLDLPSSLTGLQVLEP------    307
d1p5va1       77 ESLKWL------------------------------------------------CVKGIP     88

Query        308 ------GEETTAKSSITIELN-----    322
d1p5va1       89 KDVGVFVQFAINNCIKLLV--RPNEL    112

hit structure alignment

TMalign alignment (TM-score: 0.17 Raw score:54.37)

Query          1 ------------------ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTT     42
d1p5va1        1 FASKEYGVTIGESRIIYP---------------------LDAA--------G--------     23

Query         43 NVQLLREPETAESFHDTPTLYGIPILFP-PNRISDGTFSFRGRTY------HFDINEKDK     95
d1p5va1       24 ----------------------VMVSVKN--------T-Q--D-YPVLIQS---------     40

Query         96 HNHLHGFLYHEKWNVVT-TKQTDEGVIVETEI-DLSELPHVQKQF---PHHAVVRMTY--    148
d1p5va1       41 ---------------RIY-D------PFVVTPPLFR----LDAKQQNS-----LRIAQAG     69

Query        149 TIKEN--TLFKHATVMNKG-------KEAFPWGIGYHTTFIFPAESSLFSLTADQQWELD    199
d1p5va1       70 GVFPRDKESLKWLCVKGIPKDVGVFV----------------------------------     95

Query        200 ERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVFLSSYQKRGGENQAVIYHQHAHISIIYK    259
d1p5va1       96 ------------------------------------------------------------     96

Query        260 ADEQFKHWVVYNADGKQGYLCPEPYTWVTNAVNLDLPSSLTGLQVLEPGEETTAKSSITI    319
d1p5va1       96 ----------------------------------------------QFAINNCIKLLVRP    109

Query        320 ELN    322
d1p5va1      110 NEL    112

hit structure alignment

HHsearch alignment (Probability: 0.08 E-value:0.05)

DALI match       *******************************                             
Query        147 TYTIKENTLFKHATVMNKGKEAFPWGIGYHTTFIFPAESSLFSLTADQQWEL--DERLLP    204
d1p5va1       14 RIIYPLDAAGVMVSVKNTQDYPVLIQSRIYDPFVVTPPLFRLDAKQQNSLRIAQAGGVFP     73

DALI match          
Query        205 TGK    207
d1p5va1       74 RDK     76

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53: d1l4ia2 SfaE (svm: 0.673)

SCOP Superfamily: Periplasmic chaperone C-domain | SCOP Fold: C2 domain-like | SCOP Class: All beta proteins

Consensus: 0.42 Contact: 286
Modified z-scores:
dali:0.75 daliz:0.89 gdtts:0.82 tmscore:0.80 rmsd:0.34 AHM:0.35 LBcontacta:0.82 LBcontactb:0.78 LHM:0.51
id:0.68 blosum:0.53 compass:0.60 pearson:0.86
Scaled scores:
dali:0.79 daliz:0.54 gdtts:0.62 tmscore:0.53 rmsd:0.77 AHM:0.70 LBcontacta:0.72 LBcontactb:0.82 LHM:0.05
id:0.02 blosum:0.07 compass:0.16 pearson:0.21

hit structure alignment

DALI alignment (Z-score: 0.9 Raw score:172.00)

Query          1 anfiekitylgtpaikagnehlemivvpewgsnvislvdkttnvqllrepetaesfhdtp     60
d1l4ia2        1 ------------------------------------------------------------      1

Query         61 tlygipilfppnrisdgtfsfrgrtyhfdinekdkhnhlhgflyhekwnvvttkqtdegv    120
d1l4ia2        1 ------------------------------------------------------------      1

Query        121 iveteidlselphvqKQFPH--HAVVRMTytikentlfkhATVMNKGKEAFPWG-IGYHt    177
d1l4ia2        1 -------------viPPEQApgKLEFTRE-----------LTLFNPTPYYLTVTdLKAG-     35

Query        178 tfifpaesslfsltadqqwelderllptgklmdvpykealhegmdlrhkqlddvflssyq    237
d1l4ia2       36 ------------------------------------------------------------     36

Query        238 krggenqaviyhqhahisiiykadeqfkhwvvynadgkqgylcpEPYTWvtnavnldlps    297
d1l4ia2       36 --------------------------------------------NKSLE-----------     40

Query        298 sltglQVLEPGEETTAKS----------------sitieln    322
d1l4ia2       41 ----nTMVPPQGKVTVNIggdityktindygalteqvrgvv     77

hit structure alignment

FAST alignment (Normalized score: 1.67 Raw score:263.40)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d1l4ia2        1 ------------------------------------------------------------      1

Query         61 TLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDEGV    120
d1l4ia2        1 ------------------------------------------------------------      1

Query        121 IVETEIDLSELPHVQKQFP--------HHAVVRMTYTIKENTLFK-HATVMNKGKEAFPW    171
d1l4ia2        1 -------------------VIPPEQAPGKLEFT------------RELTLFNPTPYYLTV     29

Query        172 -GIGYHTTFIFPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDD    230
d1l4ia2       30 TDLKA-------------------------------------------------------     34

Query        231 VFLSSYQKRGGENQAVIYHQHAHISIIYKADEQFKHWVVYNADGKQGYLCPEPYTWVTNA    290
d1l4ia2       35 ------------------------------------------------------------     35

Query        291 VNLDLPSSLT-----GLQVLEPGEETTAKSSITIELN-----------------------    322
d1l4ia2       35 ----------GNKSLENTMVPPQGKVTV---------NIGGDITYKTINDYGALTEQVRG     75

Query        323 --    323
d1l4ia2       76 VV     77

hit structure alignment

TMalign alignment (TM-score: 0.10 Raw score:31.70)

Query          1 --------ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPET     52
d1l4ia2        1 VIPPEQAP----------------------------------------------------      8

Query         53 AESFHDTPTLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVT    112
d1l4ia2        9 ------------------------------------------------------------      9

Query        113 TKQTDEGVIVETEIDLSELPHVQKQFPHHAVVRMTYTIKENT-------LFKHATVMNKG    165
d1l4ia2        9 -----------------------------------------GKLEFTRE-----------     16

Query        166 KEAFPWGIGYHTTFIFPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHE------    219
d1l4ia2       17 -----------------------------------------------------LTLFNPT     23

Query        220 -GMDLRHKQLDDVFLSSYQKRGGENQA-VIYHQH-----------------AHISIIYKA    260
d1l4ia2       24 P--------------------YYLTVTDLKAGNKSLENTMVPPQGKVTVNIGGDITYKTI     63

Query        261 DEQFKHWVVYNADGKQGYLCPEPYTWVTNAVNLDLPSSLTGLQVLEPGEETTAKSSITIE    320
d1l4ia2       64 NDYG--------------------A----------------------------LTEQVRG     75

Query        321 LN    322
d1l4ia2       76 VV     77

hit structure alignment

HHsearch alignment (Probability: 0.02 E-value:0.25)

DALI match             .................
Query        153 NTLFKHATVMNKGKEAFPWGIGY    175
d1l4ia2        9 GKLEFTRELTLFNPTPYYLTVTD     31

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54: d1g4ma2 Arrestin (svm: 0.425)

SCOP Superfamily: E set domains | SCOP Fold: Immunoglobulin-like beta-sandwich | SCOP Class: All beta proteins

Consensus: 0.34 Contact: 624
Modified z-scores:
dali:0.93 daliz:0.92 gdtts:0.90 tmscore:0.92 rmsd:0.41 AHM:0.48 LBcontacta:0.94 LBcontactb:0.92 LHM:0.24
id:0.73 blosum:0.06 compass:0.24 pearson:0.82
Scaled scores:
dali:0.77 daliz:0.45 gdtts:0.45 tmscore:0.48 rmsd:0.73 AHM:0.61 LBcontacta:0.62 LBcontactb:0.72 LHM:0.22
id:-0.00 blosum:-0.01 compass:0.09 pearson:0.07

hit structure alignment

DALI alignment (Z-score: 2.2 Raw score:354.80)

Query          1 -ANFIekitylgtpaikagnehlemivvpewgsnvislvdkttnvqllrepetaesfhdt     59
d1g4ma2        1 eRPGP-------------------------------------------------------      5

Query         60 ptlygipilfppnrisdgtfsfrgrtyhfdinekdkhnhlhgflyhekwnvvttkqtdeg    119
d1g4ma2        6 ------------------------------------------------------------      6

Query        120 VIVETEIDLSelphvqkQFPHHAVVRMTYTIKEN----TLFKHATVMNKGkEAFPWGIGY    175
d1g4ma2        6 QPTAETTRQF------lMSDKPLHLEASLDKEIYyhgePISVNVHVTNNT-NKTVKKIKI     58

Query        176 HTTFIFPAEsslfsltadqqwelderllptgklmdvpykealhegmdlrhkqlddvflss    235
d1g4ma2       59 SVRQYADIC---------------------------------------------------     67

Query        236 yqkrggenqaviyhqhahisiiykadeqfkhwvvynadgKQGYLC-PEPYTWvtnavnld    294
d1g4ma2       68 -----------------------------------lfntAQYKCPvAMEEAD--------     84

Query        295 lpssltgLQVLEPgEETTAKSSI-------------------------------------    317
d1g4ma2       85 -------DTVAPS-STFCKVYTLtpflannrekrglaldgklkhedtnlasstllregan    136

Query        318 ------------------------------tIELN--------------    322
d1g4ma2      137 reilgiivsykvkvklvvsrgsdvavelpftLMHPkpkdddivfedfar    185

hit structure alignment

FAST alignment (Normalized score: 2.34 Raw score:571.70)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d1g4ma2        1 ------------------------------------------------------------      1

Query         61 TLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDEGV    120
d1g4ma2        1 ------------------------------------------------------------      1

Query        121 ------IVETEIDLSELPHVQK---QFPHHAVVRMTYTIKE-----NTLFKHATVMNKGK    166
d1g4ma2        1 ERPGPQPTAETTR---------QFLMSDKPLHLEASLDKE-IYYHGEPISVNVHVTNNTN     50

Query        167 EAFPWGIGYHTTFIFPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHK    226
d1g4ma2       51 KTV-KKIKISVRQY----------------------------------------------     63

Query        227 QLDDVFLSSYQKRGGENQAVIYHQHAHISIIYKADEQFKHWVVYNADG--------KQGY    278
d1g4ma2       64 ------------------------------------------------ADICLFNTAQYK     75

Query        279 L-CPEPYTWVTNAVNLDLPSSLTGLQVLEPGEETTAKSSITIELN---------------    322
d1g4ma2       76 CPVAMEE----------------ADDTVAPSSTFCKVYTLTPFL-ANNREKRGLALDGKL    118

Query        323 ------------------------------------------------------------    323
d1g4ma2      119 KHEDTNLASSTLLREGANREILGIIVSYKVKVKLVVSRGSDVAVELPFTLMHPKPKDDDI    178

Query        323 -------    323
d1g4ma2      179 VFEDFAR    185

hit structure alignment

TMalign alignment (TM-score: 0.23 Raw score:72.56)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d1g4ma2        1 -----------------ERP----------------------------------------      3

Query         61 TLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDEGV    120
d1g4ma2        4 -----------------------------------------------------GP----Q      6

Query        121 IVETEIDLSELPHVQKQFPHHAVVRMTYTIKENT----LFKHATVMNKGKEAFPWGIGYH    176
d1g4ma2        7 PTAETTRQF-----LM-SDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVKKIKISV     60

Query        177 TTFI--------FPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQL    228
d1g4ma2       61 RQYADICLFNTA------------------------------------------------     72

Query        229 DDVFLSSYQKRGGENQAVIYHQHAHISIIYKADEQFKHWVVYNADGKQGYLCPEPYTWVT    288
d1g4ma2       73 -----------------------------------------------QYKCPVAMEE---     82

Query        289 NAVNLDLPSSLTGLQVLE-PGEETTAKSSI------------------------------    317
d1g4ma2       83 ------------ADDTVAPSSTFCKVYTLTPFLANNREKRGLALDGKLKHEDTNLASSTL    130

Query        318 -------------------------------------TI-ELN------------    322
d1g4ma2      131 LREGANREILGIIVSYKVKVKLVVSRGSDVAVELPFTLMHPKPKDDDIVFEDFAR    185

hit structure alignment

HHsearch alignment (Probability: 0.04 E-value:0.04)

DALI match       ..************....
Query        152 ENTLFKHATVMNKGKEAF    169
d1g4ma2       36 GEPISVNVHVTNNTNKTV     53

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55: d1lb6a_ TNF receptor associated factor 6 (TRAF6) (svm: -1.197)

SCOP Superfamily: TRAF domain-like | SCOP Fold: TRAF domain-like | SCOP Class: All beta proteins

Consensus: 0.25 Contact: 522
Modified z-scores:
dali:0.92 daliz:0.94 gdtts:0.96 tmscore:0.96 rmsd:0.35 AHM:0.40 LBcontacta:0.91 LBcontactb:0.90 LHM:0.20
id:0.66 blosum:0.18 compass:0.28 pearson:0.85
Scaled scores:
dali:0.78 daliz:0.48 gdtts:0.60 tmscore:0.62 rmsd:0.79 AHM:0.70 LBcontacta:0.58 LBcontactb:0.72 LHM:0.32
id:-0.00 blosum:0.03 compass:0.11 pearson:0.11

hit structure alignment

DALI alignment (Z-score: 2.8 Raw score:390.10)

Query          1 anfiekitylgtpaikagnehlemivvpewgsnvislvdkttnvqllrepetaesfhdtp     60
d1lb6a_        1 ------------------------------------------------------------      1

Query         61 tlygipilfppnrisDGTFsfrgrtyhfdinekdkhnhlhGFLYHekwnvvtTKQT-dEG    119
d1lb6a_        1 ---------------QQCN--------------------gIYIWK-ignfgmHLKCqeEE     24

Query        120 VIVETE-IDLSelphVQKQfPHHAVVRMTYTIKEN---TLFKHATVMNK--------gKE    167
d1lb6a_       25 KPVVIHsPGFY----TGKP-GYKLCMRLHLQLPTAqrcANYISLFVHTMqgeydshlpWP     79

Query        168 AF-PWGIGYHTTfifpaesslfsltadqqwelderllptgklmdvpykealhegmdlrhk    226
d1lb6a_       80 FQgTIRLTILDQ------------------------------------------------     91

Query        227 qlddvflssyqkrggenqaviyhqhahisiiykadeqfkhwvVYNAdgkqgyLCPEPYTw    286
d1lb6a_       92 ------------------------------------------SEAP------VRQNHEE-    102

Query        287 vtnavnldlpssltGLQV-----LEPG-------eETTA--KSSIT--------------    318
d1lb6a_      103 --------------IMDAkpellAFQRptiprnpkGFGYvtFMHLEalrqrtfikddtll    148

Query        319 ---ieln    322
d1lb6a_      149 vrcevst    155

hit structure alignment

FAST alignment (Normalized score: 1.51 Raw score:338.10)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d1lb6a_        1 ------------------------------------------------------------      1

Query         61 TLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTD---    117
d1lb6a_        1 ---------------------------------------------------------QQC      3

Query        118 -------------------EGVIVETEIDLSELPHVQKQF--------PHHAVVRMTYTI    150
d1lb6a_        4 NGIYIWKIGNFGMHLKCQEEEKPVVIHS------------PGFYTGKPGYKLCMRLHLQL     51

Query        151 KEN------TLFKHATVMNKGKEA--------------FPWGIGYHTTFIFPAESSLFSL    190
d1lb6a_       52 ---PTAQRCANYISLFVHT-----MQGEYDSHLPWPFQGTIRLT--ILDQSEA-------     94

Query        191 TADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVFLSSYQKRGGENQAVIYHQ    250
d1lb6a_       95 ------------------------------------------------------------     95

Query        251 HAHISIIYKADEQFKHWVVYNADGKQ-GYLCPEPYTWVTNAVNLDLPSSLTGLQVLE---    306
d1lb6a_       95 --------------------------PVRQNHEEI----------------------MDA    106

Query        307 --------------PGEETTAKSSITIELN----------------------------    322
d1lb6a_      107 KPELLAFQRPTIPRNPKGFGY---------VTFMHLEALRQRTFIKDDTLLVRCEVST    155

hit structure alignment

TMalign alignment (TM-score: 0.22 Raw score:71.88)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPE----------------WGSNVISLVDKTTNV     44
d1lb6a_        1 Q-----------------QCNGIYIWKIGNFGMHLKCQEEEKPVV-IHSPGFYTG---KP     39

Query         45 QLLREPETAESFHDTPTLYGIPILFPPNRISDGTFSF-RGRTYHFDINEKDKHNHLHGFL    103
d1lb6a_       40 GYK----------------LCMRLHLQ--L--PTAQRC----------------------     57

Query        104 YHEKWNVVTTKQTDEGVIVETEIDLSELPHVQKQFPHHAVVRMTYTIKENTLFKHATVMN    163
d1lb6a_       58 ------------------------------------------------------------     58

Query        164 KGKEAFPWGIGYHTTFI---FP--AESSLFSLTADQQWELDERLLPTGKLMDVPYKEALH    218
d1lb6a_       58 -----ANYISLFVHTMQGEYDSHL--PWP-------------------------------     79

Query        219 EGMDLRHKQLDDVFLSSYQKRGGENQAVIYHQHAHISIIYKA--------------DEQF    264
d1lb6a_       80 ----------------------------FQ-------GTIRLTILDQSEAPVRQNHEEIM    104

Query        265 --KHW--VVYN--ADGKQG-YL-CPEPYTWVTNAVNLDLPSSLTGLQVLEPGEE-T----    311
d1lb6a_      105 DA--KPE-LLAFQ--RPTIPRNPKGFGYVT--------------FMHLEALRQRTFIKDD    145

Query        312 --TAKSSITIELN    322
d1lb6a_      146 TLLVRCEVST---    155

hit structure alignment

HHsearch alignment (Probability: 0.05 E-value:0.10)

DALI match                                                              
Query        100 HGFLYHEKWNVVTTKQTDEGVIVETEIDLSELPHVQKQFPHHAVVRMTYTIKENT    154
d1lb6a_       39 PGYKLCMRLHLQLPTAQRCANYISLFVHTMQ-GEYDSHLPWPFQGTIRLTILDQS     92

hit structures.

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56: d1qwya_ Peptidoglycan hydrolase LytM (svm: -0.860)

SCOP Superfamily: Duplicated hybrid motif | SCOP Fold: Barrel-sandwich hybrid | SCOP Class: All beta proteins

Consensus: 0.18 Contact: 766
Modified z-scores:
dali:0.96 daliz:0.97 gdtts:0.97 tmscore:0.98 rmsd:0.30 AHM:0.33 LBcontacta:0.93 LBcontactb:0.91 LHM:0.40
id:0.78 blosum:0.07 compass:0.64 pearson:0.83
Scaled scores:
dali:0.75 daliz:0.46 gdtts:0.62 tmscore:0.65 rmsd:0.81 AHM:0.73 LBcontacta:0.57 LBcontactb:0.67 LHM:0.13
id:0.01 blosum:-0.01 compass:0.02 pearson:0.09

hit structure alignment

DALI alignment (Z-score: 2.4 Raw score:373.00)

Query          1 ------------------------------------------------------------      1
d1qwya_        1 vsygtyytidsngdyhhtpdgnwnqamfdnkeysytfvdaqghthyfyncypknanangs     60

Query          1 anfiekitylgtpaikagnehlemivvpewgsnvislvdkttNVQLLRepetaesfhdtp     60
d1qwya_       61 gqtyvnpatagdnndytasqsqqhinqygyqsnvgpdasyysSGHAKD------------    108

Query         61 tlyGIPIlfppnrisdgtfsfrgrtyhfdinekdkhnhlhgflyhekwnvvttkqtdegv    120
d1qwya_      109 ---ASWL-----------------------------------------------------    112

Query        121 iveteidlselphvqkqfphhavvrMTYTIKE--------NTLFKHAtvmnkgkeafpwg    172
d1qwya_      113 ----------------------tsrKQLQPYGqyhgggahYGVDYAM-----------pe    139

Query        173 IGYHTTFIFpaesSLFSLTAdqqwelderllptgklmdvpykealhegmdlrhkqlddvf    232
d1qwya_      140 NSPVYSLTD---gTVVQAGW----------------------------------------    156

Query        233 lssyqkrGGEN--QAVIYHQHAHISIIYKAdeqFKHWVVynadgkqgYLCPEPytwvtna    290
d1qwya_      157 ------sNYGGgnQVTIKEANSNNYQWYMH---NNRLTVsagdkvkaGDQIAY-------    200

Query        291 vnldlpssltglqvlepgeeTTAKSSITIELN---------------    322
d1qwya_      201 -------------sgstgnsTAPHVHFQRMSGgignqyavdptsylq    234

hit structure alignment

FAST alignment (Normalized score: 1.39 Raw score:382.30)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKT-------------------     41
d1qwya_        1 -----------------------------------------VSYGTYYTIDSNGDYHHTP     19

Query         42 ------------------------------------------------------------     42
d1qwya_       20 DGNWNQAMFDNKEYSYTFVDAQGHTHYFYNCYPKNANANGSGQTYVNPATAGDNNDYTAS     79

Query         42 ----------------------TNVQLLREPETAESFHDTPTLYGIPILFPPNRISDGTF     79
d1qwya_       80 QSQQHINQYGYQSNVGPDASYYSSGHA---------------------------------    106

Query         80 SFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDEGVIVETEIDLSELPHVQKQFP    139
d1qwya_      107 ------------------------------------------------------------    107

Query        140 HHAVVR----------MTYTIK---------ENTLFKHATVMNKGKEAFPWG--IGYHTT    178
d1qwya_      107 ------KDASWLTSRKQLQP--YGQYHGGGAHYGVDYA--------------MPENSPVY    144

Query        179 FIFPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVFLSSYQK    238
d1qwya_      145 SLT---------------------------------------------------------    147

Query        239 RGG--------------ENQAVIYHQHAHISIIYKADEQ--FKHWVVYNADGKQGYLC--    280
d1qwya_      148 ---DGTVVQAGWSNYGGGNQVTIKEANSNNYQWY-----MHNNRLTV-----------SA    188

Query        281 ----------PEPYTWVTNAVNLDLPSSLTGLQVLEPGEET------TAKSSITIELN--    322
d1qwya_      189 GDKVKAGDQIAYSG---------------------------STGNSTAPHVHFQRMS-GG    220

Query        323 --------------    323
d1qwya_      221 IGNQYAVDPTSYLQ    234

hit structure alignment

TMalign alignment (TM-score: 0.25 Raw score:80.40)

Query          1 -------------------------ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVI     35
d1qwya_        1 VSYGTYYTIDSNGDYHHTPDGNWNQ-------AMFDN--------------K--EY-S-Y     35

Query         36 SLVDKTTNVQLLREPETAESFHDTPTLY-------GIPIL----------FPPNRISDGT     78
d1qwya_       36 TFVD-AQGHT-HYFY--------N-CYPKNANANGSGQTYVNPATAGDNNDYTASQSQQ-     83

Query         79 FSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDEGVIVETEIDLSELPHVQKQF    138
d1qwya_       84 -----------H-I-NQYGYQSNVG------------------------------P--DA     98

Query        139 PHHA--------------------VVRMTYTIKENTLFKHATVMN---KGKEAFPWG---    172
d1qwya_       99 SYYSSGHAKDASWLTSRKQLQPYG--------------------QYHG---GGAHYGVDY    135

Query        173 -----IGYHTTFIFPAESSLFSLTADQQWELDE--------------RLLP--TGKL---    208
d1qwya_      136 AMPEN----------------SPVYSLTDGTVVQAGWSNYGGGNQVT-IKEANSNNYQWY    178

Query        209 ------MDVPYKEALHEGMDLRHKQLDDVFLSSYQKRGGENQAVIYHQHAHISIIYKA--    260
d1qwya_      179 MHNNRL------------T-V--SAGDKVKAGD-------QIAY-----------SGSTG    205

Query        261 ----DEQFKHWVVYNADGKQGYLCPEPYTWVT---NA-VNLDLPSSLTG-LQVLEPGEET    311
d1qwya_      206 NSTAPHVHF--------------------QRMSGGIGNQYA-VDPTSYLQ----------    234

Query        312 TAKSSITIELN    322
d1qwya_      235 -----------    235

hit structure alignment

HHsearch alignment (Probability: 0.01 E-value:0.61)

DALI match                          
Query         83 GRTYHFDINEKDKHNHLHG    101
d1qwya_        4 GTYYTIDSNGDYHHTPDGN     22

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57: d1f0la1 Diphtheria toxin, C-terminal domain (svm: -0.596)

SCOP Superfamily: Diphtheria toxin, C-terminal domain | SCOP Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f | SCOP Class: All beta proteins

Consensus: 0.41 Contact: 747
Modified z-scores:
dali:0.95 daliz:0.95 gdtts:0.95 tmscore:0.97 rmsd:0.36 AHM:0.46 LBcontacta:0.95 LBcontactb:0.91 LHM:0.31
id:0.82 blosum:0.12 compass:0.65 pearson:0.95
Scaled scores:
dali:0.75 daliz:0.42 gdtts:0.53 tmscore:0.60 rmsd:0.81 AHM:0.66 LBcontacta:0.60 LBcontactb:0.64 LHM:0.26
id:0.01 blosum:0.04 compass:0.03 pearson:0.15

hit structure alignment

DALI alignment (Z-score: 2.9 Raw score:391.30)

Query          1 anfiekitylgtpaikagnehlemivvpewgsnvislvdkttnvqllrepetaesfhdtp     60
d1f0la1        1 ------------------------------------------------------------      1

Query         61 tlygipilfppnrisdgtfsfrgrtyhfdinekdkhnhlhgflyhekwnvvttkqtdegv    120
d1f0la1        1 ---------------------------------------------------------spg      3

Query        121 iveTEIDLSelphvqkqfphHAVVRM----TYTIK---ENTLFKHATVMNKGkEAFPWGI    173
d1f0la1        4 hktQPFLHD-----------GYAVSWntveDSIIRtgfQGESGHDIKITAEN-TPLPIAG     51

Query        174 GYHTTFIfpaesslfsltadqqwelderllptgklmdvpykealhegmdlrhkqlddvfl    233
d1f0la1       52 VLLPTIP-----------------------------------------------------     58

Query        234 ssyqkrggenqaviyhqhahiSIIY---KADE------QFKHWVVYNadgkqgYLCPEPY    284
d1f0la1       59 --------------------gKLDVnksKTHIsvngrkIRMRCRAID------GDVTFCR     92

Query        285 TWvtnavnldlpssltGLQVLEPGEETTAKSSITIELN----------------------    322
d1f0la1       93 PK--------------SPVYVGNGVHANLHVAFHRSSSekihsneissdsigvlgyqktv    138

Query        323 -----------------    323
d1f0la1      139 dhtkvnsklslffeiks    155

hit structure alignment

FAST alignment (Normalized score: 2.61 Raw score:583.60)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d1f0la1        1 ------------------------------------------------------------      1

Query         61 TLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDEGV    120
d1f0la1        1 ------------------------------------------------------------      1

Query        121 IV-----ETEIDLSELPHVQKQFP-HHAVVRMTYTI----------KENTLFKHATVMNK    164
d1f0la1        1 --SPGHKTQPFL------------HDGYAVSWN---TVEDSIIRTGFQGESGHDIKITA-     42

Query        165 GKEAFPWGIGYHTTFIFPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLR    224
d1f0la1       43 ENTPLPI-AGVLLPT---------------------------------------------     56

Query        225 HKQLDDVFLSSYQKRGGENQAVIYHQHAHI---SIIYKADEQF--------------KHW    267
d1f0la1       57 ------------------------------IPGKLDVN-----KSKTHISVNGRKIRMRC     81

Query        268 VVYNADGKQG--YLCPEPYTWVTNAVNLDLPSSLT--GLQVLEPGEETTAKSSITIELN-    322
d1f0la1       82 RA--------IDGDVTFCR----------------PKSPVYVGNGVHANLHVAFHRS--S    115

Query        323 ----------------------------------------    323
d1f0la1      116 SEKIHSNEISSDSIGVLGYQKTVDHTKVNSKLSLFFEIKS    155

hit structure alignment

TMalign alignment (TM-score: 0.21 Raw score:67.98)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d1f0la1        1 --------S--------------PGHKT--------------------------------      6

Query         61 TLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDEGV    120
d1f0la1        7 -------------------------------------------------Q-PFLH--DGY     14

Query        121 IVET----EIDLSELPHVQKQFPHHAVVRMTYTIKENTLFK-HATVMNKGKE-AFPWG--    172
d1f0la1       15 AVSWNTVEDSII-RTG--FQGE---SGHDIKITAENTPLPIAGVLLPT-IPGKLDVNKSK     67

Query        173 IGYHTTFIFPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVF    232
d1f0la1       68 THISVN------------------------------------------------------     73

Query        233 LSSYQKRGGENQAVIYHQHAHISIIYKADEQFKHWVVYNADGKQGYLCPEPYTWVTNAVN    292
d1f0la1       74 -----------------------------------------------GRKIRM-------     79

Query        293 LDLPSSLTGLQVLE-PGEETTAK---SSITIE----------------------------    320
d1f0la1       80 --------R-CRAIDGDVTFCRPKSPVYVGNGVHANLHVAFHRSSSEKIHSNEISSDSIG    130

Query        321 -------------------------LN    322
d1f0la1      131 VLGYQKTVDHTKVNSKLSLFFEIKS--    155

hit structure alignment

HHsearch alignment (Probability: 0.01 E-value:0.53)

DALI match        .............
Query        151 KENTLFKHATVMNK    164
d1f0la1       32 GESGHDIKITAENT     45

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58: d1rwha2 Chondroitinase AC (svm: -1.102)

SCOP Superfamily: Hyaluronate lyase-like, C-terminal domain | SCOP Fold: Hyaluronate lyase-like, C-terminal domain | SCOP Class: All beta proteins

Consensus: 0.44 Contact: 706
Modified z-scores:
dali:0.95 daliz:0.94 gdtts:0.94 tmscore:0.96 rmsd:0.45 AHM:0.49 LBcontacta:0.95 LBcontactb:0.93 LHM:0.23
id:0.82 blosum:0.10 compass:0.53 pearson:0.89
Scaled scores:
dali:0.74 daliz:0.40 gdtts:0.49 tmscore:0.53 rmsd:0.75 AHM:0.66 LBcontacta:0.60 LBcontactb:0.70 LHM:0.37
id:0.01 blosum:0.02 compass:0.04 pearson:0.07

hit structure alignment

DALI alignment (Z-score: 3.0 Raw score:349.30)

Query          1 anfiekitylgtpaikagnehlemivVPEWgsnvislvdkttnvqllrepetaesfhdtp     60
d1rwha2        1 ----------------------kysvIRND------------------------------      8

Query         61 tlygipilfppnrisdgtfsfrgrtyhfdinekdkhnhlhgflyhEKWNVvTTKQTdeGV    120
d1rwha2        9 ---------------------------------------------ATAQS-VEFKT--AK     20

Query        121 IVETEIDLselphvqkqfphhaVVRMTYTIKENTLFKHATVMNkgkeaFPWGIGYHTtfi    180
d1rwha2       21 TTAATFWK---pgmagdlgasgPACVVFSRHGNELSLAVSEPT----qKAAGLTLTL---     70

Query        181 fpaesslfsltadqqwelderllptgklmdvpykealhegmdlrhkqlddvflssyqkrg    240
d1rwha2       71 ------------------------------------------------------------     71

Query        241 genqaviyhqhahisIIYKADeqFKHWvvynadgkqgYLCPEPYTWvtnavnldlpsslt    300
d1rwha2       71 ---------pegtwsSVLEGA--GTLG-------tdaDGRSTLTLD--------------     98

Query        301 glQVLEpgeETTAKSSITIeln    322
d1rwha2       99 -tTGLS---GKTKLIKLKR---    113

hit structure alignment

FAST alignment (Normalized score: 2.51 Raw score:479.60)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d1rwha2        1 ------------------------------------------------------------      1

Query         61 TLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNV----------    110
d1rwha2        1 --------------------------------------------------KYSVIRNDAT     10

Query        111 --VTTKQTD-EGVIVETEIDLSELPHVQKQFPHH------------AVVRMTYTIKENTL    155
d1rwha2       11 AQSVEF---KTAKTTAATF---------------WKPGMAGDLGASGPACVVFSRHGNEL     52

Query        156 FKHATVMNKGKEAFP-----WGIGYHTTFIFPAESSLFSLTADQQWELDERLLPTGKLMD    210
d1rwha2       53 SLAVSE---------PTQKAAGLTL-----------------------------------     68

Query        211 VPYKEALHEGMDLRHKQLDDVFLSSYQKRGGENQAVIYHQHAHISII---------YKAD    261
d1rwha2       69 -----------------------------------------------TLPEGTWSSVLEG     81

Query        262 EQFKHWVVYNADGKQG--YLCPEPYTWVTNAVNLDLPSSLTGLQVLEPG------EETTA    313
d1rwha2       82 A--GTLGT--------DADGRSTLT------------------------LDTTGLSGKTK    107

Query        314 KSSITIELN--    322
d1rwha2      108 LIKL-----KR    113

hit structure alignment

TMalign alignment (TM-score: 0.24 Raw score:78.60)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d1rwha2        1 ----KY--------S-----------VIRND-----------------------------      8

Query         61 TLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDEGV    120
d1rwha2        9 --------------------------------------------ATAQSV-EFKT----A     19

Query        121 IVETEIDLSELPHV-----------QKQFPHHAVVRMTYTIKENTLFKHATVMNKGKEAF    169
d1rwha2       20 KTTAATFW-----KPGMAGDLGASG-------PACVVFSRH--GNELSLAVSEP-T-QKA     63

Query        170 PWGIGYHTTFIFPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLD    229
d1rwha2       64 AGLTLTLPEG--------------------------------------------------     73

Query        230 DVFLSSYQKRGGENQAVIYHQHAHISIIYKAD-EQFKHWVVYNADGKQGYLCPEPYTWVT    288
d1rwha2       74 ---------------T-----------WSSVLEGAGTLGTDAD--------GRSTLTL--     97

Query        289 NAVNLDLPSSLTGLQVLEPGEETTAKSSITIELN    322
d1rwha2       98 -------------DTTGLSGKTKLIKLKR-----    113

hit structure alignment

HHsearch alignment (Probability: 0.02 E-value:0.87)

DALI match       ******************** .   .........                          
Query        144 VRMTYTIKENTLFKHATVMNKGKEAFPWGIGYHTTFIFPAESSLFSLTADQ--QWELDER    201
d1rwha2       41 ACVVFSRHGNELSLAVSEPTQKAAGLTLTLPEGTWSSVLEGAGTLGTDADGRSTLTLDTT    100

DALI match         
Query        202 LL    203
d1rwha2      101 GL    102

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59: d1gmea_ Small heat shock protein (svm: -1.053)

SCOP Superfamily: HSP20-like chaperones | SCOP Fold: HSP20-like chaperones | SCOP Class: All beta proteins

Consensus: 0.47 Contact: 595
Modified z-scores:
dali:0.91 daliz:0.92 gdtts:0.94 tmscore:0.96 rmsd:0.34 AHM:0.40 LBcontacta:0.93 LBcontactb:0.90 LHM:0.35
id:0.92 blosum:0.26 compass:0.22 pearson:0.83
Scaled scores:
dali:0.73 daliz:0.40 gdtts:0.53 tmscore:0.55 rmsd:0.80 AHM:0.71 LBcontacta:0.58 LBcontactb:0.69 LHM:0.21
id:0.05 blosum:0.07 compass:0.09 pearson:0.13

hit structure alignment

DALI alignment (Z-score: 2.2 Raw score:326.40)

Query          1 ------------------anfIEKItylgtpaikaGNEHlemivvpewgsnvislvDKTT     42
d1gmea_        1 sivrrsnvfdpfadlwadpfdTFRS----ivpaisGGGS-----------------ETAA     39

Query         43 nVQLLRepetaesfhdtptlyGIPILFPpnrisdgtfsfrgrtyhfdinekdkhnhlhgf    102
d1gmea_       40 fANARM---------------DWKETPE--------------------------------     52

Query        103 lyhekwnvvttkqtdegviveteidlselphvqkqfphhavvrmtytikentlfkhatvm    162
d1gmea_       53 ------------------------------------------------------------     53

Query        163 nkgkeafpwgiGYHTTFIFP---AESSLFSLTadqqwelderllptgklmdvpykealhe    219
d1gmea_       53 -----------AHVFKADLPgvkKEEVKVEVE----------------------------     73

Query        220 gmdlrhkqlddvflssyqkrgGENQAVIYHQH------------------AHISIIYKAD    261
d1gmea_       74 ---------------------DGNVLVVSGERtkekedkndkwhrverssGKFVRRFRLL    112

Query        262 EQFK--HWVVYNAdgkQGYLCPEPYTWvtnavnldlpssltgLQVL-EPGEettakssit    318
d1gmea_      113 EDAKveEVKAGLE---NGVLTVTVPKA---------------EVKKpEVKA--------i    146

Query        319 ieln    322
d1gmea_      147 qisg    150

hit structure alignment

FAST alignment (Normalized score: 1.35 Raw score:297.90)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d1gmea_        1 ------------------------------------------------------------      1

Query         61 TLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDEGV    120
d1gmea_        1 ------------------------------------------------------------      1

Query        121 IVETEIDLSELPHVQKQFPHHA--------------------------------------    142
d1gmea_        1 ----------------------SIVRRSNVFDPFADLWADPFDTFRSIVPAISGGGSETA     38

Query        143 ---VVRMTYTIKENTLFKHATVMNKG----------------------------------    165
d1gmea_       39 AFANARMDWKETPEAHVFKADL----PGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDK     94

Query        166 -----KEAFPWGIGYHTTFIFPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEG    220
d1gmea_       95 WHRVERSSGKFVRRFRL-------------------------------------------    111

Query        221 MDLRHKQLDDVFLSSYQKRGGENQAVIYHQHAHIS------IIYKADEQFKHWVVYNADG    274
d1gmea_      112 -----------------------------------LEDAKVEEVKA--------------    122

Query        275 KQGYLCPEPYTWVTNAVNLDLPSSLTGLQVLEPGEE----TTAKSSITIELN--------    322
d1gmea_      123 ------------------------------------GLENGVLTVTVPKA--EVKKPEVK    144

Query        323 ------    323
d1gmea_      145 AIQISG    150

hit structure alignment

TMalign alignment (TM-score: 0.23 Raw score:74.98)

Query          1 ---------------------ANF----IEKITYLGTPAIKAGNE-----HLEMIVVPEW     30
d1gmea_        1 SIVRRSNVFDPFADLWADPFDTFRSIVP---------------AISGGGS----------     35

Query         31 GSNVISLVDKTTNVQLLREPETAESFHDTPTLYGIPILFPPNRISDGTFSFRGRTYHFDI     90
d1gmea_       36 --------ETAAFANARM---------------DWKET-PE-------------------     52

Query         91 NEKDKHNHLHGFLYHEKWNVVTTKQTDEGVIVETEIDLSELPHVQKQFPHHAVVRMTYTI    150
d1gmea_       53 ------------------------------------------------------------     53

Query        151 KENTLFKHATVMNKGKEAFPWGIGYHTTFIF--PAESSLFSLTADQQWELDERLLPTGKL    208
d1gmea_       53 -----------------------AHVFKADLPGVKKEEVKVEV-----------------     72

Query        209 MDVPYKEALHEGMDLRHKQLDDVFLSSYQKRGGENQAVIYHQH-----------------    251
d1gmea_       73 ---------------------------E----DGNVLVVSGERTKEKEDKNDKWHRVERS    101

Query        252 -AHISIIYKADEQFK--HWVVYNADGKQGYLCPEPYTWVTNAVNLDLPSSLTGLQV-LEP    307
d1gmea_      102 SGKFVRRFRLLEDAKVEEVKAGL--E-NGVLTVTVPK---------------AEVKKPEV    143

Query        308 GE-----ETTAKSSITIELN    322
d1gmea_      144 KAIQISG-------------    150

hit structure alignment

HHsearch alignment (Probability: 0.01 E-value:0.84)

DALI match                                               
Query        145 RMTYTIKENTLFKHATVMNKGKEAFPWGIGYHTTFIFPAE    184
d1gmea_       44 RMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGE     83

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60: d1q15a2 beta-Lactam synthetase (svm: -1.450)

SCOP Superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) | SCOP Fold: Ntn hydrolase-like | SCOP Class: Alpha and beta proteins (a+b)

Consensus: 0.25 Contact: 650
Modified z-scores:
dali:0.95 daliz:0.95 gdtts:0.93 tmscore:0.96 rmsd:0.51 AHM:0.49 LBcontacta:0.95 LBcontactb:0.94 LHM:0.38
id:0.81 blosum:0.09 compass:0.47 pearson:0.60
Scaled scores:
dali:0.75 daliz:0.43 gdtts:0.46 tmscore:0.51 rmsd:0.70 AHM:0.66 LBcontacta:0.58 LBcontactb:0.71 LHM:0.16
id:0.01 blosum:0.02 compass:0.01 pearson:0.02

hit structure alignment

DALI alignment (Z-score: 2.0 Raw score:350.20)

Query          1 anfiekitylgtpaikagnehlemivvpEWGSNViSLVDkttnvqllrepetaesfhdtp     60
d1q15a2        1 ----------------------------SNSFCV-VYKG---------------------     10

Query         61 tlygipilfppnrisdgtfsfrgrtyhfdinekdkhnhlhgflyheKWNVvTTKQTDEGV    120
d1q15a2       11 ------------------sdtdinniqrdfdgkgealsngylfieqNGHY-QKCEMERGT     51

Query        121 IVETEIDLSELP---------------------------hvqkqfphhAVVRMTYTIKE-    152
d1q15a2       52 AYLIGSLYNRTFliglagvwegeaylandaellallftrlganalalaEGDFCFFIDEPn    111

Query        153 NTLFKHATVMnkgkeafpwgIGYHTTFIfpaesslfsltadqqwelderllptgklmdvp    212
d1q15a2      112 GELTVITESR-------gfsPVHVVQGK---------------------------kawmt    137

Query        213 ykealhegmdlrhkqLDDVflssyqkrggenqaviyhqhahisiiykadeqfKHWVVYna    272
d1q15a2      138 nslklvtaaegegalWFEE---------------------ealvcqslmradTYTPVK--    174

Query        273 dgkqgylCPEPytwvtnavnldlpssltglqvlepgeeTTAKSSITIELN----------    322
d1q15a2      175 -------NAQR-------------------------lkPGAVHVLTHDSEgysfvesrtl    202

Query        323 --    323
d1q15a2      203 tt    204

hit structure alignment

FAST alignment (Normalized score: 2.11 Raw score:540.10)

Query          1 ANFIEKITY---------------------LGTPAIKAGNEHL--EMIVVPEWGSNVISL     37
d1q15a2        1 ---------SNSFCVVYKGSDTDINNIQRDFDGKGEA------LSNGYLF----------     35

Query         38 VDKTTNVQLLREPETAESFHDTPTLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHN     97
d1q15a2       36 ------------------------------------------------------------     36

Query         98 HLHGFLYHE---KWNVVTTKQTDEGVIVETEIDLSELPHVQKQFPHH-------------    141
d1q15a2       36 ---------IEQNGHY-QKCEMERGTAYLIGSLY-------------NRTFLIGLAGVWE     72

Query        142 ---------------------------AVVRMTYTIKE-NTLFKHATVMNKGKEAFPW--    171
d1q15a2       73 GEAYLANDAELLALLFTRLGANALALAEGDFCFFIDEPNGELTVITE-----------SR    121

Query        172 -GIGYHTTFIFPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDD    230
d1q15a2      122 GFSPVHVV----------------------------------------------------    129

Query        231 VFLSSYQKRGGENQAVIYHQHAHISIIYKADEQFKHWVVYNADGKQGY------------    278
d1q15a2      130 ------------------------------------------------QGKKAWMTNSLK    141

Query        279 ---------------------------------LCPEPYTWVTNAVNLDLPSSLTGLQVL    305
d1q15a2      142 LVTAAEGEGALWFEEEALVCQSLMRADTYTPVKNAQRL----------------------    179

Query        306 EPGEET--TAKSSITIELN-------------    322
d1q15a2      180 ------KPGAVHVLTHDS-EGYSFVESRTLTT    204

hit structure alignment

TMalign alignment (TM-score: 0.24 Raw score:75.83)

Query          1 ---ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFH     57
d1q15a2        1 SNS---------------------------------------------------------      3

Query         58 DTPTLYGIPILFPPNR--ISD--GT-FSFRGRTYHFDINEKDKHNHLH------G-FL-Y    104
d1q15a2        4 ------------FCVVYKGSDTDINNIQRDFDGKGEALSN----GYLFIEQNGHYQKCEM     47

Query        105 --HEKW-----------NVV--TTKQTDEGVIVET-EIDLSELPHVQKQFPHHAVV-RM-    146
d1q15a2       48 ERGTAYLIGSLYNRTFL--IGLAGVW-----EGEAYLAN---------------DAELLA     85

Query        147 -TY-TIKENTLFKHATVMNKGKEAFPWGIGY------HTT----------FIFPAESSLF    188
d1q15a2       86 LLFTRLG--ANALALAEG-------DFCFFIDEPNGELTVITESRGFSPV----------    126

Query        189 SLTADQQWELDERLL-------P-------TGKLMD------------------VPYKEA    216
d1q15a2      127 -----HVVQGK-KAWMTNSLKLVTAAEGEGALWFEEEALVCQSLMRADTYTPVK------    174

Query        217 LHEGMDLRHKQLDDVFLSSYQKRGGENQAVIYHQHAHISIIYKADEQFKHWVVYNADGK-    275
d1q15a2      175 -------------NAQRL--------K----------------PG--A-VHVLTHDSEGY    194

Query        276 -QGYLCPEPYTWVTNAVNLDLPSSLTGLQVLEPGEETTAKSSITIELN    322
d1q15a2      195 S---FVESR-------------------------------TLTT----    204

hit structure alignment

HHsearch alignment (Probability: 0.01 E-value:0.20)

DALI match              .   ......
Query        300 TGLQVLEPGEETTAKSS    316
d1q15a2      174 KNAQRLKPGAVHVLTHD    190

hit structures.

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61: d1qhva_ Adenovirus fiber protein "knob" domain (svm: -1.143)

SCOP Superfamily: Virus attachment protein globular domain | SCOP Fold: Virus attachment protein globular domain | SCOP Class: All beta proteins

Consensus: 0.27 Contact: 622
Modified z-scores:
dali:0.92 daliz:0.89 gdtts:0.92 tmscore:0.95 rmsd:0.49 AHM:0.50 LBcontacta:0.92 LBcontactb:0.92 LHM:0.22
id:0.83 blosum:0.09 compass:0.15 pearson:0.85
Scaled scores:
dali:0.73 daliz:0.35 gdtts:0.44 tmscore:0.48 rmsd:0.71 AHM:0.65 LBcontacta:0.52 LBcontactb:0.67 LHM:0.32
id:0.01 blosum:0.01 compass:0.06 pearson:0.08

hit structure alignment

DALI alignment (Z-score: 1.6 Raw score:341.00)

Query          1 ----ANFIekitylgtpaIKAGnehlemivvpewgsnvislvdkttnvqllrepetaesf     56
d1qhva_        1 aitiGNKN----------DDKL--------------------------------------     12

Query         57 hdtptlygipilfppnrisdgtfsfrgrtyhfdinekdkhnhlhgflyhekwnvvttkqt    116
d1qhva_       13 ------------------------------------------------------------     13

Query        117 degviveTEIDLselphvqkqFPHHAVVRMTYTIKENTLFKHATVMNKGKEA-------f    169
d1qhva_       13 --tlwttPDPSP----ncrihSDNDCKFTLVLTKCGSQVLATVAALAVSGDLssmtgtva     66

Query        170 PWGIGYHTTFI--------------------------------fpaesslfSLTADqqwe    197
d1qhva_       67 SVSIFLRFDQNgvlmensslkkhywnfrngnstnanpytnavgfmpnllayPKTQS----    122

Query        198 lderllptgklmdvpykealhegmdlrhkqlddvflssyqkrgGENQaviyhqhahisii    257
d1qhva_      123 ------------------------------------------qTAKNnivsqvylhgdkt    140

Query        258 ykadEQFK---HWVVynadgkqgylCPEPYTWvtnaVNLDlpssltglqvlepGEET-TA    313
d1qhva_      141 kpmiLTITlngTSES---tetsevsTYSMSFT--wsWESG--------kytteTFATnSY    187

Query        314 KSSITIeln    322
d1qhva_      188 TFSYIA-qe    195

hit structure alignment

FAST alignment (Normalized score: 1.70 Raw score:426.80)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d1qhva_        1 ------------------------------------------------------------      1

Query         61 TLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDEGV    120
d1qhva_        1 ------------------------------------------------------------      1

Query        121 IV----------------ETEIDLSELPHVQKQFP---------HHAVVRMTYTIKENTL    155
d1qhva_        1 --AITIGNKNDDKLTLWTTPDP-------------SPNCRIHSDNDCKFTLVLTKCGSQV     45

Query        156 FKHATVMNKGKEA---------FPWGIGYHTTFIFPAESSLFSLTADQQWELDERLLPTG    206
d1qhva_       46 LATVAALAVSG--DLSSMTGTVASVSIFLRF-----------------------------     74

Query        207 KLMDVPYKEALHEGMDLRHKQ---------------------------------------    227
d1qhva_       75 ---------------------DQNGVLMENSSLKKHYWNFRNGNSTNANPYTNAVGFMPN    113

Query        228 ------LDDVFLSSYQKRGGENQAVIYHQHAHISIIYKADEQFKHW--------------    267
d1qhva_      114 LLAYPKTQSQT-----------------------------------AKNNIVSQVYLHGD    138

Query        268 --------------VVYNADGKQGYL-CPEPYTWVTNAVNLDLPSSLTGLQVLE------    306
d1qhva_      139 KTKPMILTITLNGTSESTE---TSEVSTYSMS----------------------FTWSWE    173

Query        307 ------PGEE-TTAKSSITIELN---    322
d1qhva_      174 SGKYTTETFATNSYTFSYI----AQE    195

hit structure alignment

TMalign alignment (TM-score: 0.27 Raw score:88.04)

Query          1 ------ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAE     54
d1qhva_        1 AITIGNKND--------------DK--LTLWT----------------------------     16

Query         55 SFHDTPTLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTK    114
d1qhva_       17 ------------------------------------------------------------     17

Query        115 QTDEGVIVETEIDL---SELPHVQKQFPHHAVVRMTYTIKEN---TLFKHATVMNKGKEA    168
d1qhva_       17 ------TPDPSPNCRIH-----SD------NDCKFTLVLTKCGSQVLATVAALAVSGDLS     59

Query        169 F-P----WGIGYHTTFIF------------------------------P----AESSLFS    189
d1qhva_       60 SMTGTVASVSIFLRFDQNGVLMENSSLKKHYWNFRNGNSTNANPYTNAVGFMP---NLLA    116

Query        190 LTADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVFLSSYQKRGGENQAVIYH    249
d1qhva_      117 Y--------------------------P----------K-TQSQTA------KNN-----    128

Query        250 QHAHISIIYKAD------------EQFKH---WVVYNAD--GKQGYLCPEPYTWVTNAVN    292
d1qhva_      129 ---------IVSQVYLHGDKTKPMILTITLNGTSESTETSE--V-STYSMSFTW------    170

Query        293 LDLPSSLTGLQVLEPGEETTA-KSSITIELN    322
d1qhva_      171 ----SW--ESGKYTTETFATNSYTFSYIAQE    195

hit structure alignment

HHsearch alignment (Probability: 0.04 E-value:0.09)

DALI match                                             
Query        244 QAVIYHQHAHISIIYKADEQFKHWVVYNADGKQGYLCP    281
d1qhva_        1 AITIGNKNDDKLTLWTTPDPSPNCRIHSDNDCKFTLVL     38

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62: d1t16a_ Long-chain fatty acid transport protein FadL (svm: -1.123)

SCOP Superfamily: Porins | SCOP Fold: Transmembrane beta-barrels | SCOP Class: Membrane and cell surface proteins and peptides

Consensus: 0.04 Contact: 450
Modified z-scores:
dali:0.89 daliz:0.84 gdtts:0.92 tmscore:0.96 rmsd:0.50 AHM:0.51 LBcontacta:0.94 LBcontactb:0.94 LHM:0.35
id:0.83 blosum:0.07 compass:0.08 pearson:0.46
Scaled scores:
dali:0.70 daliz:0.34 gdtts:0.40 tmscore:0.47 rmsd:0.74 AHM:0.67 LBcontacta:0.53 LBcontactb:0.66 LHM:0.25
id:0.01 blosum:0.01 compass:-0.02 pearson:-0.02

hit structure alignment

DALI alignment (Z-score: 1.4 Raw score:348.50)

Query          1 ----anfiekitylgtpaikagnehlemIVVPewgsnvislvdkttnvqllREPET----     52
d1t16a_        1 agfqlnefsssglgraysgegaiaddagNVSR-------npalitmfdrptFSAGAvyid     53

Query         53 -----------------aesfhdtpTLYG---------------iPILFpPNRISDgtfs     80
d1t16a_       54 pdvnisgtspsgrslkadniaptawVPNMhfvapindqfgwgasiTSNY-GLATEF----    108

Query         81 frgrtyhfdinekDKHNHLhgflYHEK---------------------------------    107
d1t16a_      109 -----ndtyaggsVGGTTDletmNLNLsgayrlnnawsfglgfnavyarakierfagdlg    163

Query        108 ---------------------------------------------wNVVTTKQTD-EGVI    121
d1t16a_      164 qlvagqimqspagqtqqgqalaatangidsntkiahlngnqwgfgwNAGILYELDkNNRY    223

Query        122 VETEIDLSelphVQKQ--------------------------------FPHHAVVRMTYT    149
d1t16a_      224 ALTYRSEV----KIDFkgnyssdlnrafnnyglpiptatggatqsgylTLNLPEMWEVSG    279

Query        150 IKE-----NTLFKHATVMN-KGKE---------------AFPWgigyhttfifpaesslf    188
d1t16a_      280 YNRvdpqwAIHYSLAYTSWsQFQQlkatstsgdtlfqkhEGFK-----------------    322

Query        189 sltadqqwelderllptgklmdvpykealhegmdlrhkqlddvflssyqkrggenqaviy    248
d1t16a_      323 ------------------------------------------------dayrialgttyy    334

Query        249 HQHAHISIIYKADEQ---------------FKHW--------------------------    267
d1t16a_      335 YDDNWTFRTGIAFDDspvpaqnrsisipdqDRFWlsagttyafnkdasvdvgvsymhgqs    394

Query        268 ---------------VVYNadgkqgylcpepytwvtnavnldlpssltglqvlepgeett    312
d1t16a_      395 vkinegpyqfesegkAWLF-------------------------------------gtnf    417

Query        313 akssitieln    322
d1t16a_      418 nyafhhhhhh    427

hit structure alignment

FAST alignment (Normalized score: 1.09 Raw score:405.60)

Query          1 ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTP     60
d1t16a_        1 ------------------------------------------------------------      1

Query         61 TLYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNV----------    110
d1t16a_        1 --------------------------------------------------AGFQLNEFSS     10

Query        111 ------------------------------------------------------------    111
d1t16a_       11 SGLGRAYSGEGAIADDAGNVSRNPALITMFDRPTFSAGAVYIDPDVNISGTSPSGRSLKA     70

Query        111 ------------------------------------------------------------    111
d1t16a_       71 DNIAPTAWVPNMHFVAPINDQFGWGASITSNYGLATEFNDTYAGGSVGGTTDLETMNLNL    130

Query        111 VTTKQ-TDEGVIVETEIDLSELPHVQKQF-------------------------------    138
d1t16a_      131 SGAYRLNNAWSFGLGFNA-----------VYARAKIERFAGDLGQLVAGQIMQSPAGQTQ    179

Query        139 -----------------------PHHAVVRMTYTIKE-------NTLFKHATVMNKG---    165
d1t16a_      180 QGQALAATANGIDSNTKIAHLNGNQWGFGWNAGIL--YELDKNNRYALTYRSEVK--IDF    235

Query        166 ------------------------------KEAFPWGIGYHTTFIFPAESSLFSLTADQQ    195
d1t16a_      236 KGNYSSDLNRAFNNYGLPIPTATGGATQSGYLTLNLPE----------------------    273

Query        196 WELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVFLSSYQKRGGENQ----AVIYHQH    251
d1t16a_      274 -------------------------------------------------MWEVSGYNR--    282

Query        252 ---AHISIIYKADEQF-----------------------------KHWVVYNADGKQ---    276
d1t16a_      283 VDPQWAIHYSL-----AYTSWSQFQQLKATSTSGDTLFQKHEGFKDAYRI-------ALG    330

Query        277 ------------GYLCPEPYTWVTNAVNLDLPSSLTGLQVLEPGEETTAKSSITIELN--    322
d1t16a_      331 TTYYYDDNWTFRTGIAFDDSP-------------------------------------VP    353

Query        323 ------------------------------------------------------------    323
d1t16a_      354 AQNRSISIPDQDRFWLSAGTTYAFNKDASVDVGVSYMHGQSVKINEGPYQFESEGKAWLF    413

Query        323 --------------    323
d1t16a_      414 GTNFNYAFHHHHHH    427

hit structure alignment

TMalign alignment (TM-score: 0.33 Raw score:105.16)

Query          1 ---------------------ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVI-SLV     38
d1t16a_        1 AGFQLNEFSSSGLGRAYSGEG--------------------AIADDAGN--VSRNPALIT     38

Query         39 DKTTNVQ-LLREPETAESFH----------------------------DTPTLYG-----     64
d1t16a_       39 MF--D-RP--TFS----AGAVYIDPDVNISGTSPSGRSLKADNIAPTAWVPNMHFVAPIN     89

Query         65 -------IPILFPPNRISDGT-----FS-FRGRTYHFDINEKDKHNHLHGFLYHEKWNVV    111
d1t16a_       90 DQFGWGASITSNYG-LATEFNDTYAG-GS-VGGTTDLE-----------TMN--L-NLSG    132

Query        112 TTKQTDEGVIVETEIDLSELPHVQ------------------------------------    135
d1t16a_      133 AYRLNNAWSFGLGFNAV--YARAKIERFAGDLGQLVAGQIMQSPAGQTQQGQALAATANG    190

Query        136 ----------KQFPHHAVVRMTYTIKE---NTLFKHATVMNKGK----------------    166
d1t16a_      191 IDSNTKIAHLNGNQWGFGWNAGILYELDKNNRYALTYRSEVKIDFKGNYSSDLNRAFNNY    250

Query        167 -----------------EAFPWGIGY--------HTTFIFPAESSLFSLT----------    191
d1t16a_      251 GLPIPTATGGATQSGYLTLNLPEMWEVSGYNRVD---------PQWAIHYSLAYTSWSQF    301

Query        192 -----------------------ADQQWELDERLLPTGKLMDVPYKEALHEGMDLRHKQL    228
d1t16a_      302 QQLKATSTSGDTLFQKHEGFKDA-------------------------------------    324

Query        229 DDVFLSSYQKRGGENQAVIYHQHA--HISIIYKADEQF---------------KHWVVYN    271
d1t16a_      325 --------Y--R-IALGTTYYYDDNW-TFRTGIAFDDSPVPAQNRSISIPDQDRFWLSAG    372

Query        272 ADGK-----QGYLCPEPYTWVTNA-VNLDLP--------SSLT-----------------    300
d1t16a_      373 TTYAFNKDASVDVGVSY---MHGQS--VKINEGPYQFES---EGKAWLFGTNFNYAFHHH    424

Query        301 ---GLQVLEPGEETTAKSSITIELN    322
d1t16a_      425 HHH----------------------    427

hit structure alignment

HHsearch alignment (Probability: 0.03 E-value:0.75)

DALI match                                                                   
Query        117 DEGVIVETEIDLSELPHVQKQFP--------HHAVVRMTYTIKENTLFKHATVMNKGKEA    168
d1t16a_      336 DDNWTFRTGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTYAFNKDA-SVDVGVSYMHGQS    394

DALI match              
Query        169 FPWGIGY    175
d1t16a_      395 VKINEGP    401

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63: d1ecfa2 Glutamine PRPP amidotransferase, N-terminal domain (svm: -1.194)

SCOP Superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) | SCOP Fold: Ntn hydrolase-like | SCOP Class: Alpha and beta proteins (a+b)

Consensus: 0.26 Contact: 677
Modified z-scores:
dali:0.93 daliz:0.93 gdtts:0.91 tmscore:0.94 rmsd:0.58 AHM:0.61 LBcontacta:0.97 LBcontactb:0.95 LHM:0.44
id:0.70 blosum:0.03 compass:0.14 pearson:0.61
Scaled scores:
dali:0.75 daliz:0.42 gdtts:0.44 tmscore:0.50 rmsd:0.67 AHM:0.60 LBcontacta:0.62 LBcontactb:0.71 LHM:0.17
id:-0.00 blosum:-0.02 compass:0.01 pearson:0.01

hit structure alignment

DALI alignment (Z-score: 2.0 Raw score:377.60)

Query          1 -----------------anfiekitylGTPAIKAGNE-----------------------     20
d1ecfa2        1 cgivgiagvmpvnqsiydaltvlqhrgQDAAGIITIDanncfrlrkanglvsdvfearhm     60

Query         21 -----HLEMIVVPEWgsnvislvdkttnvqllrepetaesfhdtptlygipilfppnris     75
d1ecfa2       61 qrlqgNMGIGHVRYP---------------------------------------------     75

Query         76 dgtfsfrgrtyhfdinekdkhnhlhgflyhekwnvvtTKQTD---EGVIVETEIDLSELP    132
d1ecfa2       76 --------------------------tagsssaseaqPFYVNspyGITLAHNGNLTNAHE    109

Query        133 ---------------------------------------------hvqkqfphhAVVRMT    147
d1ecfa2      110 lrkklfeekrrhinttsdseillnifaseldnfrhypleadnifaaiaatnrliRGAYAC    169

Query        148 YTIKE-NTLFKHATVMnkgkeafpwgigYHTTFifpaesslfsltadqqwelderllptg    206
d1ecfa2      170 VAMIIgHGMVAFRDPN--------girpLVLGK---------------------------    194

Query        207 klmdvpykealhegmdlrhkqlddvflssyqkrggenqavIYHQHAhISIIykadeqfkh    266
d1ecfa2      195 ----------------------------------------RDIDEN-RTEY-------mv    206

Query        267 wvvynadgkqgYLCPEPytwvtnavnldlpssltglqvlepgeeTTAKSSITIE------    320
d1ecfa2      207 asesvaldtlgFDFLRD-------------------------vaPGEAIYITEEgqlftr    241

Query        321 ------ln    322
d1ecfa2      242 qcadnpvs    249

hit structure alignment

FAST alignment (Normalized score: 1.83 Raw score:517.90)

Query          1 ANFIEKITYLG----------------------------TPAIKAGN-------------     19
d1ecfa2        1 -----------CGIVGIAGVMPVNQSIYDALTVLQHRGQDAAGIIT-IDANNCFRLRKAN     48

Query         20 ----------------EHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAESFHDTPTLY     63
d1ecfa2       49 GLVSDVFEARHMQRLQGNMGIGHV------------------------------------     72

Query         64 GIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVV------------    111
d1ecfa2       73 ------------------------------------------------RYPTAGSSSASE     84

Query        112 -TTKQ---TDEGVIVETEIDLSELPHVQKQFPHH--------------------------    141
d1ecfa2       85 AQPFYVNSPYGITLAHN-----------------GNLTNAHELRKKLFEEKRRHINTTSD    127

Query        142 ------------------------------------AVVRMTYTI-KENTLFKHATVMNK    164
d1ecfa2      128 SEILLNIFASELDNFRHYPLEADNIFAAIAATNRLIRGAYACVAMIIGHGMVAFRD----    183

Query        165 GKEAFPW---GIGYHTTFIFPAESSLFSLTADQQWELDERLLPTGKLMDVPYKEALHEGM    221
d1ecfa2      184 -------PNGIRPLVLG-------------------------------------------    193

Query        222 DLRHKQLDDVFLSSYQKRGGENQAVIYHQHAHISIIYKADEQFKHWVVYNADGKQ-----    276
d1ecfa2      194 ------------------------KRDID-ENRTEY-------------------MVASE    209

Query        277 -------GYLCPEPYTWVTNAVNLDLPSSLTGLQVLEPGEET-----TAKSSITIELN--    322
d1ecfa2      210 SVALDTLGFDFL------------------------------RDVAPGEAIYIT----EE    235

Query        323 --------------    323
d1ecfa2      236 GQLFTRQCADNPVS    249

hit structure alignment

TMalign alignment (TM-score: 0.28 Raw score:90.73)

Query          1 ----ANFIEKITYLGTPAIKAGNEHLEMIVVPEWGSNVISLVDKTTNVQLLR--------     48
d1ecfa2        1 CGIV---------------------------------GIAG-------VMPVNQSIYDAL     20

Query         49 ---------------EPETAESFHDT---------------PTLY-GIPILFPPNRISDG     77
d1ecfa2       21 TVLQHRGQDAAGIITIDANNCFRLRKANGLVSDVFEARHMQRLQGNMGI-G--HVR-Y-P     75

Query         78 TFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNV----------------VTTKQTDEGVI    121
d1ecfa2       76 T-------AGSSSAS-----EAQP-F-YVNSPYGITLAHNGNLTNAHEL-----------    110

Query        122 VETEI-DLS----ELPHVQKQFPHHA--VV--RM--T----YTIKENTLFKH--AT-VMN    163
d1ecfa2      111 ----RKKLFEEKRRHINT-TSDSEILLNIFASELDNFRHYPLEAD----NIFAAIAATNR    161

Query        164 KGKEAFPWGIGYHT---------------TFIFPAESSLFSLTADQQWELDERLLPTGKL    208
d1ecfa2      162 L---IRGAYACVAMIIGHGMVAFRDPNGI-------------------------------    187

Query        209 MDVPYKEALHEGMDLRHKQLDDVFLSSYQKRGGENQAVIYHQHAHISIIYKADEQFKHWV    268
d1ecfa2      188 ----------------------RPLV---------LGKRDID--ENRTEYMV---ASESV    211

Query        269 VYNADGKQGYL-CP-EPYTWVTNAVNLDLPSSLTGLQVLEPGEETTAKSSI---TIE---    320
d1ecfa2      212 ALDT-L---GFD-FL-RDV------------A--P----------GEAIYITEEGQLFTR    241

Query        321 --------LN    322
d1ecfa2      242 QCADNPVS--    249

hit structure alignment

HHsearch alignment (Probability: 0.01 E-value:0.80)

DALI match                             
Query        242 ENQAVIYHQHAHISIIYKADEQ    263
d1ecfa2      226 PGEAIYITEEGQLFTRQCADNP    247