Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T515_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d7odca2 | Eukaryotic ornithine decarboxylase | PLP-binding barrel | TIM beta/alpha-barrel | α/β |
| Hit | d1f6ya_ | corrinoid/iron-sulfur protein methyltransferase MetR | Dihydropteroate synthetase-like | TIM beta/alpha-barrel | α/β |
Query <-- 1.000 --> IntermediateDALI alignment (Z-score: 19.4 Raw score:1731.40) query 1 mietpyyliDKAKLTRNMERIAHVREksGAKALLALKCFATWSVFDLMRDYMDGTTSSSL 60 ::::::::::::::::: :::::::::::::::::::::::::::::::: d7odca2 1 ---------DLGDILKKHLRWLKALP--RVTPFYAVKCNDSRAIVSTLAAIGTGFDCASK 49 query 61 FEVRLGRE-RFGK-ETHAYSVAYGDNEIDEVV-SHADKIIFNSISQLERFADKAAGIARG 117 :::::::: :::: :::::::::::::::::: ::::::::::::::::::::::::::: d7odca2 50 TEIQLVQGlGVPAeRVIYANPCKQVSQIKYAAsNGVQMMTFDSEIELMKVARAHPKAKLV 109 query 118 LRLNPqRLGEW--DVPKVERVMD----RINGFMIHNNCENkdfGLFDrMLGEIEERFGAL 171 ::::: ::::: :::::::::: ::::::::::::: :::: :::::::::::: d7odca2 110 LRIAT-KFGATlkTSRLLLERAKelniDVIGVSFHVGSGC---TDPD-TFVQAVSDARCV 164 query 172 IA-------RVDWVSLGGGIHfTGDDY--PVDAFSARLRAFSDRYG-----VQIYLEPGE 217 :: :::::::::::: ::::: ::::::::::::::::: ::::::::: d7odca2 165 FDmatevgfSMHLLDIGGGFP-GSEDTklKFEEITSVINPALDKYFpsdsgVRIIAEPGR 223 query 218 ASITKSttlevtvldtlynknlaivdssieahmldlliyretakvlpnegshsymicgks 277 :::::: d7odca2 224 YYVASA------------------------------------------------------ 229 query 278 clagdvfgefrfaeelkvgdrisfqdaagytmvkknwfngvkmpaiaireldgsvrtvre 337 d7odca2 230 ------------------------------------------------------------ 230 query 338 ftyadyeqsls 348 d7odca2 230 ----------- 230 FAST alignment (Normalized score: 11.24 Raw score:3173.00) query 1 MIETPYYLIDKAKLTRNMERIAHVREK--SGAKALLALKCFATWSVFDLMRDYM--DGTT 56 :::::::::::::: ::::::::::::::::::::::: :::: d7odca2 1 ---------DLGDILKKHLRWLK----ALPRVTPFYAVKCNDSRAIVSTLAA--IGTGFD 45 query 57 SSSLFEVRLGRERFGK------ETHAYSVAYGDNEIDEVVS-HADKIIFNSISQLERFAD 109 :::::::::::: ::::::::::::::::::: :::::::::::::::::: d7odca2 46 CASKTEIQLVQG----LGVPAERVIYANPCKQVSQIKYAASNGVQMMTFDSEIELMKVAR 101 query 110 KAAGIARGLRLNPQRLGEWDVPKVERVMD-------RINGFMIHNN--CENKDFGLFDRM 160 :::::::::::: :::: ::::::::::: :::::::: :::::::::::: d7odca2 102 AHPKAKLVLRIA-TKFG-ATLKTSRLLLERAKELNIDVIGVSFH--VGSGCTDPDTFVQA 157 query 161 LGEIEERFGALIA----------RVDWVSLGGGIHFTG------DDYPVDAFSARLRAFS 204 :::::: :::::::::: :::::::::::::::: d7odca2 158 VSDARC-------VFDMATEVGFSMHLLDIGGG-----FPGSEDTKLKFEEITSVINPAL 205 query 205 DR-----YGVQIYLEPGEASITKSTTLEVTVLDTLYNKNLAIVDSSIEAHMLDLLIYRET 259 :: :::::::::::::::: d7odca2 206 DKYFPSDSGVRIIAEPGRYYVAS------------------------------------- 228 query 260 AKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVK 319 d7odca2 229 ------------------------------------------------------------ 229 query 320 MPAIAIRELDGSVRTVREFTYADYEQSLS- 348 d7odca2 229 -----------------------------A 229 TMalign alignment (TM-score: 0.53 Raw score:182.79) query 1 MIETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSSSL 60 :::::::::::::::: :: ::::::::::::::::::::::::::::::: d7odca2 1 ---------DLGDILKKHLRWLKAL-PR-VTPFYAVKCNDSRAIVSTLAAIGTGFDCASK 49 query 61 FEVRLGRERFGK--ETHAYSVAYGDNEIDEVVSH-ADKIIFNSISQLERFADKAAGIARG 117 :::::::::::: :::::::::::::::::::: ::::::::::::::::::::::::: d7odca2 50 TEIQLVQGLGVPAERVIYANPCKQVSQIKYAASNGVQMMTFDSEIELMKVARAHPKAKLV 109 query 118 LRLNPQRLGEW--DVPKVERVMD---R-INGFMIHNNCENKDFGLFDRMLGEIEERFGAL 171 ::::: ::::: :::::::::: : ::::::::::::::::::::::::::: :::: d7odca2 110 LRIAT-KFGATLKTSRLLLERAKELNIDVIGVSFHVGSGCTDPDTFVQAVSDARC-VFDM 167 query 172 IA----RVDWVSLGGGIHFTG----DDYP-VDAFSARLRAFSDR-YGVQIYLEPGEASIT 221 :: ::::::::::::::: :::: :::::::::::::: ::::::::::::::: d7odca2 168 ATEVGFSMHLLDIGGGFPGSEDTKLKFEEITSVINPALDKYFPSDSGVRIIAEPGRYYVA 227 query 222 KSTTLEVTVLDTLYNKNLAIVDSSIEAHMLDLLIYRETAKVLPNEGSHSYMICGKSCLAG 281 :: d7odca2 228 SA---------------------------------------------------------- 229 query 282 DVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVREFTYA 341 d7odca2 230 ------------------------------------------------------------ 230 query 342 DYEQSLS 348 d7odca2 230 ------- 230 HHsearch alignment (Probability: 1.00 E-value:0.00) query 10 DKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSSSLFEVRLGRER 69 :::::::::::::::: :::::::::::::::::::::::::::::::::::::::::: d7odca2 1 DLGDILKKHLRWLKAL--PRVTPFYAVKCNDSRAIVSTLAAIGTGFDCASKTEIQLVQGL 58 query 70 FGKETHAYSVA--YGDNEIDEVVSHAD-KIIFNSISQLERFADKAAGIARGLRLNPQRLG 126 ::::::::::: :::::::::::::: :::::::::::::::::::::::::::: ::: d7odca2 59 GVPAERVIYANPCKQVSQIKYAASNGVQMMTFDSEIELMKVARAHPKAKLVLRIAT-KFG 117 query 127 EWDVPKVERVMDR------INGFMIHNNCENKDFGLFDRMLGEIEE---RFGALIARVDW 177 ::::::::::::: ::::::::::::::::::::::::::: ::::::::::: d7odca2 118 ATLKTSRLLLERAKELNIDVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGFSMHL 177 query 178 VSLGGGIHFTGDD-YPVDAFSARLRAFSDRY-----GVQIYLEPGEASITKS 223 ::::::::::::: ::::::::::::::::: :::::::::::::::: d7odca2 178 LDIGGGFPGSEDTKLKFEEITSVINPALDKYFPSDSGVRIIAEPGRYYVASA 229
Intermediate <-- 0.909 --> HitDALI alignment (Z-score: 9.7 Raw score:991.10) d7odca2 1 dlgdilkkhlrwlkalprVTPFYAVKC---------------ndSRAIVSTLAAIGT-GF 44 ::::::::: ::::::::::::: :: d1f6ya_ 1 ------------------MLIIGERINgmfgdikraiqerdpapVQEWARRQEEGGArAL 42 d7odca2 45 DCA-------SKTEIQLVQGLGVPaeRVIYANpcKQVSQIKYAASN--GVQM-MTFD-SE 93 ::: :::::::::::::: :::::: :::::::::::: :::: :::: :: d1f6ya_ 43 DLNvgdkvsaMEWLVEVTQEVSNL--TLCLDS--TNIKAIEAGLKKckNRAMiNSTNaER 98 d7odca2 94 IELMKVARAHP--KAKLVLRIA------tkfgaTLKTSRLLLERAKELNIDV--IGVSFH 143 ::::::::::: ::::::::: ::::::::::::::::::: :::::: d1f6ya_ 99 EKVEKLFPLAVehGAALIGLTMnktgipkdsdtRLAFAMELVAAADEFGLPMedLYIDPL 158 d7odca2 144 VGsGCTD-PDTFVQAVSDARCVFDMatevGFSMhLLDIGGGFpgsedTKLKFEEITSVIN 202 :: :::: ::::::::::::::::: :::: :::::::: ::::::::::::: d1f6ya_ 159 IL-PANVaQDHAPEVLKTLQQIKML---aDPAP-KTVLGLSN--vsqNCQNRPLINRTFL 211 d7odca2 203 PALDKYFpsdsgvrIIAEPG--------------------------ryyvasa 229 ::::::: :::::: d1f6ya_ 212 AMAMACG------lMSAIADacdealietaataeillnqtvycdsfvkmfktr 258 FAST alignment (Normalized score: 5.09 Raw score:1236.00) d7odca2 1 ----------------------DLGDILKKHLRWLKALPR---VTPFYAVKCND---SRA 32 :::::::::::::: :::::: ::: d1f6ya_ 1 MLIIGERINGMFGDIKRAIQERDPAPVQEWARRQEE----GGARALDLN-----VGDKVS 51 d7odca2 33 IVSTLAAIG---------TGFDCASKTEIQLVQGLGVPAE----RVIYANPCKQ------ 73 ::::::: :::::::::::::::: ::::: d1f6ya_ 52 AMEWLVE--VTQEVSNLTLCLDSTNIKAIEAGLK------KCKNRAMIN-----STNAER 98 d7odca2 74 ---VSQIKYAASNGVQMMTFD--------------SEIELMKVARAHP---------KAK 107 ::::::::::: ::::: ::::::::::: ::: d1f6ya_ 99 EKVEKLFPLAVEHG-AALIG-LTMNKTGIPKDSDTRLAFAMELVAA--ADEFGLPMEDLY 154 d7odca2 108 LVLRIATKFGA-----TLKTSRLLLERAKELNIDV----------IGVSFHVGSGCTDPD 152 ::::: :::::::::::::: :::: d1f6ya_ 155 IDPLI------LPANVAQDHAPEVLKTLQQ-----IKMLADPAPKTVLG----------- 192 d7odca2 153 TFV---------QAVSDARCVFDMATEVGFSMHLLDIGGGFPGSEDTKLKFEEI-----T 198 :::::::::::::::: ::::: : d1f6ya_ 193 ---LSNVSQNCQNRPLINRTFLAMAMAC--GLMSA-------------------IADACD 228 d7odca2 199 SVINPALDKYFPSDSGVRIIAEPGRYYVASA-------------------- 229 :::::::::: d1f6ya_ 229 EALIETAATA---------------------EILLNQTVYCDSFVKMFKTR 258 TMalign alignment (TM-score: 0.64 Raw score:147.63) d7odca2 1 ----------------------DLGDILKKHLRWLKALPRVTPFYAVKC-ND-S-RAIVS 35 :::::::::::::: : :::::::::: :: : ::::: d1f6ya_ 1 MLIIGERINGMFGDIKRAIQERDPAPVQEWARRQEE-G-GARALDLNVGDKVSAMEWLVE 58 d7odca2 36 TLAAIG-TGFDC-A-SKTEIQLVQGLGVPAERVIYANPC----KQVSQIKYAASNGVQMM 88 :::::: ::::: : :::::::::::::: : ::::::: :::::::::::::: :: d1f6ya_ 59 VTQEVSNLTLCLDSTNIKAIEAGLKKCKN-R-AMINSTNAEREKVEKLFPLAVEHGA-AL 115 d7odca2 89 TF-D----------------SEIELMKVARAHPKA-KLVLRIATK-------FG-ATLKT 122 :: : ::::::::::::::: ::::::::: :: ::::: d1f6ya_ 116 IGLTMNKTGIPKDSDTRLAFAMELVAAADEFGLPMEDLYIDPLILPANVAQDHAPEVLKT 175 d7odca2 123 SRLLLERAKELNIDVIGVSFH-VG-SGCT--DPDTFVQAVSDARCVFDMATEVGFSMHLL 178 :::::: :: :::: ::::: :: :::: :::::::::::::::: :: d1f6ya_ 176 LQQIKM-LA--DPAP-KTVLGLSNVSQNCQNRPLINRTFLAMAMACG-----------LM 220 d7odca2 179 DIGGGFPGSEDTKLKFEEITSVINPALDKYFP--SDSG----V--RII--AEPGRYYVAS 228 :::: : :: ::::::::::::: :::: : ::: d1f6ya_ 221 SAIA-D---------AC--DEALIETAATAEILLNQTVYCDSFVKMFKTR---------- 258 d7odca2 229 A 229 d1f6ya_ 259 - 259 HHsearch alignment (Probability: 0.91 E-value:0.00) d7odca2 88 MTFDSEIE--LMKVARAHPKAKLVLRIATKFGATLKTSRLLLERAKELNIDVIGVSFHVG 145 :::::::: :::::::::::::: ::::::: ::::::::::::::::::::::::: d1f6ya_ 68 LCLDSTNIKAIEAGLKKCKNRAMI---NSTNAER-EKVEKLFPLAVEHGAALIGLTMNKT 123 d7odca2 146 SGCTDPDTFVQAVSDARCVFDMATEVGFSMH--LLDIG 181 ::: ::::::::::::::::::::::::: ::::: d1f6ya_ 124 GIP---KDSDTRLAFAMELVAAADEFGLPMEDLYIDPL 158