Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T515_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d7odca2 | Eukaryotic ornithine decarboxylase | PLP-binding barrel | TIM beta/alpha-barrel | α/β |
| Hit | d1tv8a_ | Molybdenum cofactor biosynthesis protein A MoaA | Radical SAM enzymes | TIM beta/alpha-barrel | α/β |
Query <-- 1.000 --> IntermediateDALI alignment (Z-score: 19.4 Raw score:1731.40) query 1 mietpyyliDKAKLTRNMERIAHVREksGAKALLALKCFATWSVFDLMRDYMDGTTSSSL 60 ::::::::::::::::: :::::::::::::::::::::::::::::::: d7odca2 1 ---------DLGDILKKHLRWLKALP--RVTPFYAVKCNDSRAIVSTLAAIGTGFDCASK 49 query 61 FEVRLGRE-RFGK-ETHAYSVAYGDNEIDEVV-SHADKIIFNSISQLERFADKAAGIARG 117 :::::::: :::: :::::::::::::::::: ::::::::::::::::::::::::::: d7odca2 50 TEIQLVQGlGVPAeRVIYANPCKQVSQIKYAAsNGVQMMTFDSEIELMKVARAHPKAKLV 109 query 118 LRLNPqRLGEW--DVPKVERVMD----RINGFMIHNNCENkdfGLFDrMLGEIEERFGAL 171 ::::: ::::: :::::::::: ::::::::::::: :::: :::::::::::: d7odca2 110 LRIAT-KFGATlkTSRLLLERAKelniDVIGVSFHVGSGC---TDPD-TFVQAVSDARCV 164 query 172 IA-------RVDWVSLGGGIHfTGDDY--PVDAFSARLRAFSDRYG-----VQIYLEPGE 217 :: :::::::::::: ::::: ::::::::::::::::: ::::::::: d7odca2 165 FDmatevgfSMHLLDIGGGFP-GSEDTklKFEEITSVINPALDKYFpsdsgVRIIAEPGR 223 query 218 ASITKSttlevtvldtlynknlaivdssieahmldlliyretakvlpnegshsymicgks 277 :::::: d7odca2 224 YYVASA------------------------------------------------------ 229 query 278 clagdvfgefrfaeelkvgdrisfqdaagytmvkknwfngvkmpaiaireldgsvrtvre 337 d7odca2 230 ------------------------------------------------------------ 230 query 338 ftyadyeqsls 348 d7odca2 230 ----------- 230 FAST alignment (Normalized score: 11.24 Raw score:3173.00) query 1 MIETPYYLIDKAKLTRNMERIAHVREK--SGAKALLALKCFATWSVFDLMRDYM--DGTT 56 :::::::::::::: ::::::::::::::::::::::: :::: d7odca2 1 ---------DLGDILKKHLRWLK----ALPRVTPFYAVKCNDSRAIVSTLAA--IGTGFD 45 query 57 SSSLFEVRLGRERFGK------ETHAYSVAYGDNEIDEVVS-HADKIIFNSISQLERFAD 109 :::::::::::: ::::::::::::::::::: :::::::::::::::::: d7odca2 46 CASKTEIQLVQG----LGVPAERVIYANPCKQVSQIKYAASNGVQMMTFDSEIELMKVAR 101 query 110 KAAGIARGLRLNPQRLGEWDVPKVERVMD-------RINGFMIHNN--CENKDFGLFDRM 160 :::::::::::: :::: ::::::::::: :::::::: :::::::::::: d7odca2 102 AHPKAKLVLRIA-TKFG-ATLKTSRLLLERAKELNIDVIGVSFH--VGSGCTDPDTFVQA 157 query 161 LGEIEERFGALIA----------RVDWVSLGGGIHFTG------DDYPVDAFSARLRAFS 204 :::::: :::::::::: :::::::::::::::: d7odca2 158 VSDARC-------VFDMATEVGFSMHLLDIGGG-----FPGSEDTKLKFEEITSVINPAL 205 query 205 DR-----YGVQIYLEPGEASITKSTTLEVTVLDTLYNKNLAIVDSSIEAHMLDLLIYRET 259 :: :::::::::::::::: d7odca2 206 DKYFPSDSGVRIIAEPGRYYVAS------------------------------------- 228 query 260 AKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVK 319 d7odca2 229 ------------------------------------------------------------ 229 query 320 MPAIAIRELDGSVRTVREFTYADYEQSLS- 348 d7odca2 229 -----------------------------A 229 TMalign alignment (TM-score: 0.53 Raw score:182.79) query 1 MIETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSSSL 60 :::::::::::::::: :: ::::::::::::::::::::::::::::::: d7odca2 1 ---------DLGDILKKHLRWLKAL-PR-VTPFYAVKCNDSRAIVSTLAAIGTGFDCASK 49 query 61 FEVRLGRERFGK--ETHAYSVAYGDNEIDEVVSH-ADKIIFNSISQLERFADKAAGIARG 117 :::::::::::: :::::::::::::::::::: ::::::::::::::::::::::::: d7odca2 50 TEIQLVQGLGVPAERVIYANPCKQVSQIKYAASNGVQMMTFDSEIELMKVARAHPKAKLV 109 query 118 LRLNPQRLGEW--DVPKVERVMD---R-INGFMIHNNCENKDFGLFDRMLGEIEERFGAL 171 ::::: ::::: :::::::::: : ::::::::::::::::::::::::::: :::: d7odca2 110 LRIAT-KFGATLKTSRLLLERAKELNIDVIGVSFHVGSGCTDPDTFVQAVSDARC-VFDM 167 query 172 IA----RVDWVSLGGGIHFTG----DDYP-VDAFSARLRAFSDR-YGVQIYLEPGEASIT 221 :: ::::::::::::::: :::: :::::::::::::: ::::::::::::::: d7odca2 168 ATEVGFSMHLLDIGGGFPGSEDTKLKFEEITSVINPALDKYFPSDSGVRIIAEPGRYYVA 227 query 222 KSTTLEVTVLDTLYNKNLAIVDSSIEAHMLDLLIYRETAKVLPNEGSHSYMICGKSCLAG 281 :: d7odca2 228 SA---------------------------------------------------------- 229 query 282 DVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVREFTYA 341 d7odca2 230 ------------------------------------------------------------ 230 query 342 DYEQSLS 348 d7odca2 230 ------- 230 HHsearch alignment (Probability: 1.00 E-value:0.00) query 10 DKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSSSLFEVRLGRER 69 :::::::::::::::: :::::::::::::::::::::::::::::::::::::::::: d7odca2 1 DLGDILKKHLRWLKAL--PRVTPFYAVKCNDSRAIVSTLAAIGTGFDCASKTEIQLVQGL 58 query 70 FGKETHAYSVA--YGDNEIDEVVSHAD-KIIFNSISQLERFADKAAGIARGLRLNPQRLG 126 ::::::::::: :::::::::::::: :::::::::::::::::::::::::::: ::: d7odca2 59 GVPAERVIYANPCKQVSQIKYAASNGVQMMTFDSEIELMKVARAHPKAKLVLRIAT-KFG 117 query 127 EWDVPKVERVMDR------INGFMIHNNCENKDFGLFDRMLGEIEE---RFGALIARVDW 177 ::::::::::::: ::::::::::::::::::::::::::: ::::::::::: d7odca2 118 ATLKTSRLLLERAKELNIDVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGFSMHL 177 query 178 VSLGGGIHFTGDD-YPVDAFSARLRAFSDRY-----GVQIYLEPGEASITKS 223 ::::::::::::: ::::::::::::::::: :::::::::::::::: d7odca2 178 LDIGGGFPGSEDTKLKFEEITSVINPALDKYFPSDSGVRIIAEPGRYYVASA 229
Intermediate <-- 0.940 --> HitDALI alignment (Z-score: 5.7 Raw score:710.40) d7odca2 1 dlgdilkkhlrwlkalprvtpfyavkcndsraivSTLAaigtGFDCA------------- 47 :::: ::::: d1tv8a_ 1 ---------------------------eqikdklGRPI---rDLRLSvtdrcnfrcdycm 30 d7odca2 48 ----------------------SKTEIQLVQGLGVPAerVIYA---NPCK--QVSQIKYA 80 ::::::::::::::: :::: :::: :::::::: d1tv8a_ 31 pkevfgddfvflpknelltfdeMARIAKVYAELGVKK--IRITggePLMRrdLDVLIAKL 88 d7odca2 81 ASN---GVQMMTFD---SEIELMKVARAHPkAKLVLRIAT----------kfgaTLKTSR 124 ::: :::::::: ::::::::::::: ::::::::: :::::: d1tv8a_ 89 NQIdgiEDIGLTTNgllLKKHGQKLYDAGL-RRINVSLDAiddtlfqsinnrniKATTIL 147 d7odca2 125 LLLERAKELNIDViGVSFHVgsgctDPDTFvQAVSDARCVFDMATevgfsMHLLdIGGGF 184 ::::::::::::: :::::: ::::: :::::::::::::: :::: ::::: d1tv8a_ 148 EQIDYATSIGLNV-KVNVVI----qKGIND-DQIIPMLEYFKDKH-----IEIR-FIEFM 195 d7odca2 185 PG--sEDTKLKfeeITSVINPALD-----------------kyFPSD--SGVRII----- 218 :: :::::: :::::::::: :::: :::::: d1tv8a_ 196 DVgndNGWDFSkvvTKDEMLTMIEqhfeidpvepkyfgevakyYRHKdnGVQFGLitsvs 255 d7odca2 219 ---------------------------------------------------aepgryyVA 227 :: d1tv8a_ 256 qsfcstctrarlssdgkfygclfatvdgfnvkafirsgvtdeelkeqfkalwqirddrYS 315 d7odca2 228 SA---------- 229 :: d1tv8a_ 316 DErtaqtvanrq 327 FAST alignment (Normalized score: 4.70 Raw score:1287.00) d7odca2 1 DLGDILKKHLRWLKALPRVTPFYAVKCNDSRAIVSTLAAIG-----------TGFDCA-- 47 ::::: d1tv8a_ 1 -----------------------------------------EQIKDKLGRPIRDLRL-SV 18 d7odca2 48 ----------------------------------SKTEIQLVQGLGVPAE-RVIYA---N 69 ::::::::::::: ::::: : d1tv8a_ 19 TDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGV---KKIRITGGEP 75 d7odca2 70 PCK--QVSQIKYAAS----NGVQMMTFD----SEIELMKVARAHPK---AKLVLRIATKF 116 ::: ::::::::: :::::::: :::::::::: ::::::: d1tv8a_ 76 LMRRDLDVLIAKLN-QIDGIEDIGLTT-NGLLLKKHGQKLYD----AGLRRINVSL---- 125 d7odca2 117 G---------------ATLKTSRLLLERAKELNIDVIGVSFHVGSGC--TDPDTFVQAVS 159 ::::::::::::::::::: :::::::: ::::::::::: d1tv8a_ 126 -DAIDDTLFQSINNRNIKATTILEQIDYATSIGLN-VKVNVVIQ---KGINDDQIIPMLE 180 d7odca2 160 DARCVFDMATEVGFSM--HLLDIGGGFPGS----------EDTK--LKFEEITSVINPAL 205 :::: :::::: :::: ::::::::::::: d1tv8a_ 181 YFKD------------KHIEIRFI------EFMDVGNDNGWDFSKVVTKDEMLTMIEQH- 221 d7odca2 206 DKYFP--------------------SDSGVRIIAEPGRYYVASA---------------- 229 :::::::::::::: d1tv8a_ 222 -----FEIDPVEPKYFGEVAKYYRHKDNGVQFGLITSVS-----QSFCSTCTRARLSSDG 271 d7odca2 230 -------------------------------------------------------- 230 d1tv8a_ 272 KFYGCLFATVDGFNVKAFIRSGVTDEELKEQFKALWQIRDDRYSDERTAQTVANRQ 327 TMalign alignment (TM-score: 0.55 Raw score:125.93) d7odca2 1 DLGDILKKHLRWLKALPRVTPFYAVKC---------------------------ND---S 30 :: ::::::: : ::::::::: :: : d1tv8a_ 1 -----EQ-IKDKLGR-P-IRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDE 52 d7odca2 31 R-AIVSTLAAI-GTGFDC----AS-K-TEIQLVQGL-GV-PAERVIYANPCKQ-VSQIKY 79 : ::::::::: :::::: :: : ::::::::: :: ::::::::::::: :::::: d1tv8a_ 53 MARIAKVYAELGVKKIRITGGEPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQK 112 d7odca2 80 AAS-NGVQMMTFD-----------------SEIELMKVARAHP-K-AKLVLRIAT--KFG 117 ::: ::::::::: ::::::::::::: : ::::::::: d1tv8a_ 113 LYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKG--- 169 d7odca2 118 ATLKTSRLLLERAKELNIDVIGVSFHVGSGCTDPDTF-VQAVSDARCVFDMA-TEV---- 171 ::::::::::::::: ::::::::::::::::::::: ::::::::::::: ::: d1tv8a_ 170 INDDQIIPMLEYFKD-KHIEIRFIEFMDVGNDNGWDFS-KVVTKDEMLTMIEQHFEIDPV 227 d7odca2 172 -------------G----FSMHLLDI----------G-----------GGFPGSED---- 189 : :::::::: : :::::::: d1tv8a_ 228 EPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATVDGFNVK 287 d7odca2 190 -----------------------TKLKFEEITSVIN-------PALDKYFPSDSGVRIIA 219 :::::::::: d1tv8a_ 288 AFIRSGVTDEELKEQFKALWQIR---DDRYSDERTAQTVANRQ----------------- 327 d7odca2 220 EPGRYYVASA 229 d1tv8a_ 328 ---------- 328 HHsearch alignment (Probability: 0.94 E-value:0.00) d7odca2 31 RAIVSTLAAIGTGFDCASKTEI-------QLVQGLGV-PA-ERVIY-ANPCKQVSQIKYA 80 :::::::::::::::::::::: :::::::: :: ::::: ::::::::::::: d1tv8a_ 54 ARIAKVYAELGVKKIRITGGEPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKL 113 d7odca2 81 ASNGVQM--MTFDSEI 94 ::::::: ::::::: d1tv8a_ 114 YDAGLRRINVSLDAID 129