Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T515_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1odza_ | Mannanase A, ManA | (Trans)glycosidases | TIM beta/alpha-barrel | α/β |
| Hit | d2plca_ | Phosphatidylinositol-specific phospholipase C | PLC-like phosphodiesterases | TIM beta/alpha-barrel | α/β |
Query <-- 0.639 --> IntermediateDALI alignment (Z-score: 8.6 Raw score:998.60) query 1 --mietpyylidkakltrnmeriahvreksGAKALLALkcFATW------SVFDLM---- 48 :::::::: :::: :::::: d1odza_ 1 vkpvtvklvdsqatmetrslfafmqeqrrhSIMFGHQH--ETTQgltitrTDGTQSdtfn 58 query 49 --rDYMDGTTSSSLF--------evRLGRERFG---KETHAYSVA--------------- 80 :::::::::::: :::::::: ::::::::: d1odza_ 59 avgDFAAVYGWDTLSivapkaegdiVAQVKKAYargGIITVSSHFdnpktdtqkgvwpvg 118 query 81 -----------------------yGDNEIDEVVS---------HADKIIFN--------- 99 :::::::::: :::::::: d1odza_ 119 tswdqtpavvdslpggaynpvlngYLDQVAEWANnlkdeqgrlIPVIFRLYhentgswfw 178 query 100 ----------sISQLERFADKAA------GIARGLRLNPQ--rlgeWDVPKVErVMDRIN 141 :::::::::::: ::::::::::: ::::::: :::::: d1odza_ 179 wgdkqstpeqyKQLFRYSVEYLRdvkgvrNFLYAYSPNNFwdvteaNYLERYP-GDEWVD 237 query 142 GFMIHNNcENKD-FGLFDRMLGEIeeRFGALIA-RVDWVSL-GGGI------hftGDDYP 192 ::::::: :::: ::::::::::: ::::::: ::::::: :::: ::::: d1odza_ 238 VLGFDTY-GPVAdNADWFRNVVANaaLVARMAEaRGKIPVIsGIGIrapdieaglYDNQW 296 query 193 VDAFSARLRAfsDRYG-VQIYLEPG---------------EASItKSTTlevtvldtlyn 236 :::::::::: :::: :::::::: :::: :::: d1odza_ 297 YRKLISGLKA--DPDArEIAFLLVWrnapqgvpggtqvphYWVP-ANRP----------- 342 query 237 knlaivdssieahmldlliyretakvlpnegshsymicgksclagdvfgefrfaeelkvg 296 d1odza_ 343 ------------------------------------------------------------ 343 query 297 drisfqdaagytmvkknwfngvkmpaiaireldgsvrtvreftyadyeqsls 348 d1odza_ 343 ---------------eninngtledfqafyadeftafnrdieqvyqrptliv 379 FAST alignment (Normalized score: 3.29 Raw score:1195.00) query 1 MIETPYYLIDKAKLTRNMERIAHVREKS------------------------------GA 30 :: d1odza_ 1 ----------------------------VKPVTVKLVDSQATMETRSLFAFMQEQRRHSI 32 query 31 KALLALKCFATWSVFDLMRD--------------------------YMDGTTSS------ 58 :::: ::::::: d1odza_ 33 MFGH----------------QHETTQGLTITRTDGTQSDTFNAVGDFAAVYGW-DTLSIV 75 query 59 -------SLFEVRLGRERFG--KETHAYSVAY---------------------------- 81 :::::::::: ::::::: d1odza_ 76 APKAEGDIVAQVKKAYA---RGGIITVSS---HFDNPKTDTQKGVWPVGTSWDQTPAVVD 129 query 82 ----------GDNEIDEVVSHA--------------DKIIFN------------------ 99 :::::::::: :::: d1odza_ 130 SLPGGAYNPVLNGYLDQVAE--WANNLKDEQGRLIPVIFR--LYHENTGSWFWWGDKQST 185 query 100 ---SISQLERFADK------AAGIARGLRLNPQRLGE----WDVPKVER---VMDRINGF 143 ::::::::::: ::::::::::: :::::::: :::::::: d1odza_ 186 PEQYKQLFRYSVEYLRDVKGVRNFLYAYSPN------NFWDVTEANYLERYPGDEWVDVL 239 query 144 MIHNNCE----NKDFGLFDRMLGEIEERFGALIARV-DWVSLGGGIHFTGDDY------- 191 ::: ::::::::::::::::::::::::: :::::: d1odza_ 240 GFD----TYGPVADNADWFRNVVANAALVARMAEARGKIPVIS----------GIGIRAP 285 query 192 ----------PVDAFSARLRAFSDRYGVQ-------IYLEPGEASITKSTTLEVTVLDTL 234 ::::::::::: :::: d1odza_ 286 DIEAGLYDNQWYRKLISGLKA--------DPDAREIAFLL-------------------- 317 query 235 YNKNLAIVDSSIEAHMLDLLIYRETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELK 294 d1odza_ 318 ------------------------------------------------------------ 318 query 295 VGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVREFTYADYEQSLS------ 348 d1odza_ 318 ------------------------------------------------------VWRNAP 323 query 349 -------------------------------------------------------- 349 d1odza_ 324 QGVPGGTQVPHYWVPANRPENINNGTLEDFQAFYADEFTAFNRDIEQVYQRPTLIV 379 TMalign alignment (TM-score: 0.35 Raw score:120.82) query 1 ------MIETPYYLIDKAKLTRNMERIAHVREKSGA-----------------KALLALK 37 ::: d1odza_ 1 VKPVTV---------------------------KLVDSQATMETRSLFAFMQE------- 26 query 38 CFATWSVFDLMRDYMDGTTS-SSL-------------FEVR-LGRERFGKETHAYS---- 78 :::::::::: ::: :::: ::::::: ::::: d1odza_ 27 ----------QRRHSIMFGHQHETTQGLTITRTDGTQSDTFNAVGDFAA--VYGWDTLSI 74 query 79 -----VAYGDNEIDEVVSHADKIIFNSISQLERFADKAAGIARGLRLNPQ---------- 123 ::::::::::::::::::::: ::::: d1odza_ 75 VAPKAEGDIVAQVKKAYARGGIITVS-------------------SHFDNPKTDTQKGVW 115 query 124 ---RL------------------GEWD-VPKVERVMDRI--------NGFMIHNNCENK- 152 :: :::: ::::::::::: :::::::::::: d1odza_ 116 PVGTSWDQTPAVVDSLPGGAYNPVLNGYLDQVAEWANNLKDEQGRLIPVIFRLYHENTGS 175 query 153 ----DF--GLFDRMLGEIEERFGALIA--RVD-WVSLGGGIHFTGDDYPVDAFSARLRAF 203 :: ::::::::::::::::::: ::: ::::::::::::::::::::::::::: d1odza_ 176 WFWWGDKQSTPEQYKQLFRYSVEYLRDVKGVRNFLYAYSPNNFWDVTEANYLERYPGDEW 235 query 204 SDRYGVQIYLEPGEAS----I-TKSTT-------------------------LEVTVLDT 233 : ::::::::: : ::::: d1odza_ 236 V------DVLGFDTYGPVADNADWFRNVVANAALVARMAEARGKIPVISGIG-------- 281 query 234 LYNKNLAIVDSSIEAHMLDLLIYRETAKVLPNEGSHSYMICGKSCLAGDVF--GEFRFAE 291 ::::::: : : : : d1odza_ 282 ---------------IRAPDIE-A-------------------G----L-YDN------- 294 query 292 ELKVGDRISF--QDAA-----------------GY--------------TMVKKN-WFNG 317 :: :: :: :::::: :::: d1odza_ 295 --------QWYR--KLISGLKADPDAREIAFLLVWRNAPQGVPGGTQVPHYWVPANRPEN 344 query 318 VKMPAIAI-RELDGSVRTVR-----------------------EFTYADYEQSLS 348 :::::::: ::: d1odza_ 345 INNGTLEDF--------QAFYADEFTAFNRDIEQVYQRPTLIV------------ 379 HHsearch alignment (Probability: 0.04 E-value:0.13) query 101 ISQLERFADKAAG-----IARGLRLNPQRLGEWDVPKVERVMDRINGFMIHNNCENKDFG 155 ::::::::::::: ::::::::::::::: ::::::::::: d1odza_ 144 LDQVAEWANNLKDEQGRLIPVIFRLYHENTGSW----------------FWWGDKQSTPE 187 query 156 LFDRMLGEIEERFGA 170 ::::::::::::::: d1odza_ 188 QYKQLFRYSVEYLRD 202
Intermediate <-- 0.749 --> HitDALI alignment (Z-score: 7.7 Raw score:948.90) d1odza_ 1 ---------VKPVtvklvdsqatmetrslfAFMQEQrrhsIMFGHQHEtTQGL------- 44 :::: :::::: :::::::: :::: d2plca_ 1 vttkqwmsaLPDT-----------------TNLAAL----SIPGTHDT-MSYNgditwtl 38 d1odza_ 45 -----titrtdGTQSdtfnavGDFAAVYGWDtlSIVApKAEG--------DIVAQVKKAY 91 :::: :::::::::: :::: :::: :::::::::: d2plca_ 39 tkplaqtqtmsLYQQ-----lEAGIRYIDIR--AKDN-LNIYhgpiflnaSLSGVLETIT 90 d1odza_ 92 ARG-------GIITVSSHFDNpktdtqkgvwpvgtswdqtpavvdslpggaynpvLNGYL 144 ::: ::::::::::: ::::: d2plca_ 91 QFLkknpketIIMRLKDEQNS----------------------------------NDSFD 116 d1odza_ 145 DQVAEWANNLKdeqgRLIP----------------------VIFRLyhentgswfwwgdk 182 ::::::::::: :::: ::::: d2plca_ 117 YRIQPLINIYK----DYFYttprtdtsnkiptlkdvrgkilLLSEN-------------- 158 d1odza_ 183 qstpeqykqlfRYSVeyLRDVkGVRNFLYAYspnnfwdvteanylerypgdeWVDVLGFD 242 :::: :::: ::::::::: :::::::: d2plca_ 159 ----------hTKKP--LVIN-SRKFGMQFG---------------------APNQVIQD 184 d1odza_ 243 TYGPVAdNADWFRNVVANAALVARMAearGKIPVIsGIGIRAPDIEaglydNQWYRKLIS 302 :::::: ::::::::::::::::::: :::::: :::::::::: ::::::::: d2plca_ 185 DYNGPS-VKTKFKEIVQTAYQASKAD---NKLFLN-HISATSLTFTprqyaAALNNKVEQ 239 d1odza_ 303 GLKADP--daREIAFLLVWrnapqgvpggtqvphywvpanrpeninngtledFQAFYadE 360 :::::: ::::::::: ::::: : d2plca_ 240 FVLNLTsekvRGLGILIMD-------------------------------fpEKQTI--K 266 d1odza_ 361 FTAfnrdieqvyqrptliv 379 ::: d2plca_ 267 NII-----------knnkf 274 FAST alignment (Normalized score: 3.59 Raw score:1156.00) d1odza_ 1 VKPVTVKLVDSQATMETRSLFAFMQEQR----------------RHSIMFGHQHETTQGL 44 ::::::::::: d2plca_ 1 ----------------------------VTTKQWMSALPDTTNLAALSIPGTHDT----- 27 d1odza_ 45 TITRTDGTQ-----------------------SDTFNAVGD-FAAVYGWDTLSIVAPKAE 80 ::::: ::::::: d2plca_ 28 ---------MSYNGDITWTLTKPLAQTQTMSLYQQLE----AGIRYIDI----------- 63 d1odza_ 81 G--------------------DIVAQVKKAYA--RGGIITVSSHFDNPKTDTQKGVWPVG 118 ::::::::::: ::::::::: d2plca_ 64 -RAKDNLNIYHGPIFLNASLSGVLETITQFLKKNPKETIIMRL----------------- 105 d1odza_ 119 T-SWDQTPAVVDSLPGGA-YNPVLNGYLDQVAEWANNLKDEQGRL--------------- 161 :::: :::::::::::::: d2plca_ 106 -KDEQN------------SNDSFDYRIQPLINI------------YKDYFYTTPRTDTSN 140 d1odza_ 162 ---------IPVIFRLYHENTGSWFWWGDKQSTPEQYKQLFRYSVEYLRDVKGV------ 206 :::::: d2plca_ 141 KIPTLKDVRGKILLL---------------------------------------SENHTK 161 d1odza_ 207 --------RNFLYAYSPNNFWDVTEANYLERYPGDEW---VDVLGFDTYGPVADNAD--- 252 ::::: ::::::::: d2plca_ 162 KPLVINSRKFGMQ------------------------FGAPNQVIQDDY--------NGP 189 d1odza_ 253 WFRNVVANAALVARMAEA-RGKIPVISGIGIRAPDIEAGLYDN---------QWYRKLIS 302 :::::::::::::::::: :::::: :::: :::::::: d2plca_ 190 SVKTKFKEIVQTAYQASKADNKLFL-NHIS-------------ATSLTFTPRQYAAALNN 235 d1odza_ 303 GLKADPDARE------------IAFLLVWRNAPQGVPGGTQVPHYWVPANRPENINNG-- 348 :::: :::::: d2plca_ 236 KVEQ------FVLNLTSEKVRGLGILIM------------------------------DF 259 d1odza_ 349 -TLEDFQAFYADEFTAFNRDIEQVYQRPTLIV---- 379 :::::::::: d2plca_ 260 PEKQTIKNIIK---------------------NNKF 274 TMalign alignment (TM-score: 0.45 Raw score:168.75) d1odza_ 1 ----------VKPVTVKLVDSQATMETRSLFAFMQEQRRHSIMFGHQHETTQG------- 43 :::::::: : :::::::::::: d2plca_ 1 VTTKQWMSAL------------------PDTTNLAA-L---SIPGTHDTMSYNGDITWTL 38 d1odza_ 44 -------LTITRTDGTQSDTFNAVGDFAAVYGWDTLSIVAPKAE--------GD--IVAQ 86 ::: : :::: :: ::::::::: :: :::::: :: :::: d2plca_ 39 TKPLAQTQTM--S-LYQQ-LE----AGIRYIDIR-AK-DNLNIYHGPIFLNASLSGVLET 88 d1odza_ 87 VKKAYA-R--GGIITVSSHFDNPKTDTQKGVWPVGTSWDQTPAVVDSLPGGAYNPVLNGY 143 :::::: : ::::::::::::: :: :: d2plca_ 89 ITQFLKKNPKETIIMRLKDEQNS--------------------------------ND-SF 115 d1odza_ 144 LDQVAEWANNLKDEQGRL--------------------IPVIFRLYHENTGSWFWWGDKQ 183 :::::::::::: ::: :::::::: : d2plca_ 116 DYRIQPLINIYK---DYFYTTPRTDTSNKIPTLKDVRGKILLLSEN---------H---- 159 d1odza_ 184 STPEQYKQLFRYSVEYLRDVKGVRNFLYAYSPNNFWDVTEANYLERYPGDEWVDVLGFDT 243 :: :: :: ::::::::::: ::::::::: d2plca_ 160 --------TK--KP--LV-INSRKFGMQFG---------------------APNQVIQDD 185 d1odza_ 244 YGPVADNADWFRNVVANAALVARMAEARGKIPVISGIGIRAP-DIEAGLYDNQWYRKLIS 302 :::: :::::::::::::::::: :: :::::: ::::::: ::: ::::::::::::: d2plca_ 186 YNGP-SVKTKFKEIVQTAYQASK-AD--NKLFLN-HISATSLTFTP-RQYAAALNNKVEQ 239 d1odza_ 303 GLKAD--P-DAREIAFLLVWRNAPQGVPGGTQVPHYWVPANRPENINNGTLEDFQAFYAD 359 ::::: : ::::::::: ::: ::::::: d2plca_ 240 FVLNLTSEK-VRGLGILIM-----------------DFP--------------EKQTIKN 267 d1odza_ 360 EFTAFNRDIEQVYQRPTLIV 379 ::: :::: d2plca_ 268 --IIK--NNKF--------- 274 HHsearch alignment (Probability: 0.01 E-value:0.17) d1odza_ 23 FMQEQRRHS-----IMFGHQHETTQG 43 ::::::::: :::::::::::: d2plca_ 6 WMSALPDTTNLAALSIPGTHDTMSYN 31