Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T515_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1o4ua1 | Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain | Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain | TIM beta/alpha-barrel | α/β |
| Hit | d1eg5a_ | NifS-like protein/selenocysteine lyase | PLP-dependent transferases | PLP-dependent transferases | α/β |
Query <-- 0.718 --> IntermediateDALI alignment (Z-score: 6.5 Raw score:622.00) query 1 mietpyylidkakltrNMERIAHVREKSG-AKALLALKCFATW-sVFDLM-RDYMDGtts 57 ::::::::::::: ::::::::::::: ::::: :::::: d1o4ua1 1 ----------------VATTTRRFAEKLKhAKIAATRKILPGLgvLQKIAvVHGGGD--- 41 query 58 sslfevrlgrerfgkethAYSVAYgdneidevvshadkiifnSISQLERFADKA-AGIAR 116 :::::: :::::::::::: ::::: d1o4ua1 42 ----------------cvMIKDNH------------lkmygsAERAVQEVRKIIpFTTKI 73 query 117 GLRLNPqrlgEWDVpkVERVmdrINGFMIHNncenkdfglfdrMLGEIEERFGALIA--R 174 :::::: :::: :::: :::::::: :::::::::::::: : d1o4ua1 74 EVEVEN--leDALR-aVEAG---ADIVMLDN-----------lSPEEVKDISRRIKDinP 116 query 175 VDWVSLGGGIHFtgddypvDAFSaRLRAFSdrygvqIYLEPGEASITKSTtlevtvldtl 234 :::::::::::: :::: :::::: :::::::::::::: d1o4ua1 117 NVIVEVSGGITE-------ENVS-LYDFET-----vDVISSSRLTLQEVF---------- 153 query 235 ynknlaivdssieahmldlliyretakvlpnegshsymicgksclagdvfgefrfaeelk 294 d1o4ua1 154 ------------------------------------------------------------ 154 query 295 vgdrisfqdaagytmvkknwfngvkmpaiaiRELDgsvrtvreftyadyeqsls 348 :::: d1o4ua1 154 ------------------------------vDLSL---------------eiqr 162 FAST alignment (Normalized score: 3.50 Raw score:832.30) query 1 MIETPYYLIDKAKL-TRNMERIAHVREKSGAKALLALKCFA------TWSVFDLMRDYMD 53 ::::::::::: ::::::::: :::::::::: d1o4ua1 1 --------------VATTTRRFAEKL--KHAKIAATR----KILPGLGVLQKIAVVH--- 37 query 54 GTTSSSLFEVRLGRERFGKETHAYSVAYGDNEIDEVVSHAD----KIIFN---------- 99 :::: d1o4ua1 38 -----------------------------------------GGGDCVMI-KDNHLKMYGS 55 query 100 SISQLERFADK-AAGIARGLRLNPQRLGEWDVPKVERVMD------------RINGFMIH 146 ::::::::::: :::::::::: ::::::: d1o4ua1 56 AERAVQEVRKIIPFTTKIEVEV------------------ENLEDALRAVEAGADIVML- 96 query 147 NNCEN--KDFGLFDRMLGEIEERFGALIARV--DWVSLGGGIHFTGDDY---PVDAFSAR 199 ::::::::::::::::: ::::::::: ::::: d1o4ua1 97 -----DNLSPEEVKDISRRIKDIN-------PNVIVEVSGGI-------TEENVSLY--- 134 query 200 LRAFSDRYGVQ-----IYLEPGEASITK-------STTLEVTVLDTLYNKNLAIVDSSIE 247 :::::: ::::::::: d1o4ua1 135 -----------DFETVDVISSS------RLTLQEVFVDLSLEIQ---------------- 161 query 248 AHMLDLLIYRETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGY 307 d1o4ua1 162 ------------------------------------------------------------ 162 query 308 TMVKKNWFNGVKMPAIAIRELDGSVRTVREFTYADYEQSLS- 348 d1o4ua1 162 -----------------------------------------R 162 TMalign alignment (TM-score: 0.28 Raw score:96.08) query 1 MIETPYYLIDKAKLTRNMERIAHVREK--S------GAKALLALKCFATWSVFDLMRDYM 52 : ::::: : :::::::: :: : :::::: d1o4ua1 1 --------------------V-ATTTRRFAEKLKHAKIAATRKI-LP----G--LGVLQK 32 query 53 D--------GTTSSSLFEVRLGRERFGKETHAYSVAYG-DNEI-DEV-VS---H----AD 94 : :::::::::: :::: ::: :: : :: d1o4ua1 33 IAVVHGGGD-------------------CVMIKDNHLKMYGSAERAVQEVRKIIPFTTKI 73 query 95 KIIFNSISQLERFADKAAGIARGLRLNPQRLGEWDVPKVERVMD-R--INGFMIHNNCEN 151 :::::::::::::::: :::::::::::: :::::::::::: : ::::::::: d1o4ua1 74 EVEVENLEDALRAVEA-GADIVMLDNLSP---EEVKDISRRIKDINPNVIVEVSGGI--- 126 query 152 KDFGLFDRMLGEIEERFGALIARVDWVSLGGGI-HFTGDDY-------PVDAFSARLRAF 203 ::::: :: :: ::::::::: ::: ::::::: d1o4ua1 127 -----TEENV--SL--YD--FETVDVISS-SRLTLQEVFVDLSLEIQR------------ 162 query 204 SDRYGVQIYLEPGEASITKSTTLEVTVLDTLYNKNLAIVDSSIEAHMLDLLIYRETAKVL 263 d1o4ua1 163 ------------------------------------------------------------ 163 query 264 PNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAI 323 d1o4ua1 163 ------------------------------------------------------------ 163 query 324 AIRELDGSVRTVREFTYADYEQSLS 348 d1o4ua1 163 ------------------------- 163 HHsearch alignment (Probability: 0.39 E-value:0.01) query 14 LTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSS------------SLF 61 :::::::::::: ::::::::::::::::::::::::::::::: ::: d1o4ua1 1 VATTTRRFAEKL--KHAKIAATRKILPGLGVLQKIAVVHGGGDCVMIKDNHLKMYGSAER 58 query 62 EVRLGRERFGKETHAYSVAYGDNEIDEVVSHADK-IIFNSISQ--LERFADKAAGIARGL 118 :::::::::::::::::::::::::::::::::: :::::::: ::::::::::::::: d1o4ua1 59 AVQEVRKIIPFTTKIEVEVENLEDALRAVEAGADIVMLDNLSPEEVKDISRRIKDINPNV 118 query 119 RLNPQRLGEWDVPKVERVMDRINGFMI 145 ::::: ::::::::::::::::::::: d1o4ua1 119 IVEVS-GGITEENVSLYDFETVDVISS 144
Intermediate <-- 1.017 --> HitDALI alignment (Z-score: 3.0 Raw score:374.00) d1o4ua1 1 ---------------------------------------------vattTRRFAEKLK-- 13 ::::::::: d1eg5a_ 1 mrvyfdnnattrvddrvleemivfyrekygnpnsahgmgieanlhmekaREKVAKVLGvs 60 d1o4ua1 14 ---hakiaaTRKIlpglgvlqkiavvhgggdcvmikdnhlkmygsaeravqevrkiiPFT 70 :::: ::: d1eg5a_ 61 pseifftscATES--------------------------------inwilktvaetfEKR 88 d1o4ua1 71 TKIEVEV-------------------------------ENLEDALRAVEAGADIVMLDNL 99 ::::::: :::::::::::::::::::::: d1eg5a_ 89 KRTIITTpiehkavletmkylsmkgfkvkyvpvdsrgvVKLEELEKLVDEDTFLVSIMAA 148 d1o4ua1 100 -----speEVKDISRRIKDINPNVIVEVSG-GITE-ENVSlYDFETVDVISSsRLTL--- 149 :::::::::::::::::::::: :::: :::: ::::::::::: :::: d1eg5a_ 149 nnevgtiqPVEDVTRIVKKKNKETLVHVDAvQTIGkIPFS-LEKLEVDYASF-SAHKfhg 206 d1o4ua1 150 -------------------------------qEVFV------------------------ 154 :::: d1eg5a_ 207 pkgvgityirkgvpirplihgggqerglrsgtQNVPgivgaarameiaveelseaakhme 266 d1o4ua1 155 ------------------------------------------------------------ 155 d1eg5a_ 267 klrsklvsglmnlgahiitpleislpntlsvsfpnirgstlqnllsgygiyvsthvldam 326 d1o4ua1 155 ------------------------------dlsleiqr 162 d1eg5a_ 327 gvdrriaqgairislckynteeevdyflkkieeilsfl 364 FAST alignment (Normalized score: 2.39 Raw score:580.90) d1o4ua1 1 ---------------------------------------------VATTTRRFAEKLKHA 15 :::::::::::: d1eg5a_ 1 MRVYFDNNATTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVL--- 57 d1o4ua1 16 KIAATRKILPGLGVLQKIAVVHGGG-------------------------------DCVM 44 :::: d1eg5a_ 58 -------------------------GVSPSEIFFTSCATESINWILKTVAETFEKRKRTI 92 d1o4ua1 45 IKDNHLKMYGSA--------ERAVQEVRKIIPFT--TKIEVEV---------ENLEDALR 85 :: ::::::::: :::: :::::::: d1eg5a_ 93 IT----------TPIEHKAVLETMKYLSM-----KGFKVK---YVPVDSRGVVKLEELEK 134 d1o4ua1 86 AVEA---GADIVMLDNLSPE-----------EVKDISRRIKDINPNVIVEVSGGITEE-- 129 : ::::::: ::::::::::::::::::::: d1eg5a_ 135 L---VDEDTFLVSI------MAANNEVGTIQPVEDVTRIVKKKNKETLVHVD------AV 179 d1o4ua1 130 --------NVSLYDFE-TVDVISSSRLTLQEVFVDLSLEIQR------------------ 162 :::: ::::::: d1eg5a_ 180 QTIGKIPFSLEK----LEVDYASF------------------SAHKFHGPKGVGITYIRK 217 d1o4ua1 163 ------------------------------------------------------------ 163 d1eg5a_ 218 GVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLM 277 d1o4ua1 163 ------------------------------------------------------------ 163 d1eg5a_ 278 NLGAHIITPLEISLPNTLSVSFPNIRGSTLQNLLSGYGIYVSTHVLDAMGVDRRIAQGAI 337 d1o4ua1 163 --------------------------- 163 d1eg5a_ 338 RISLCKYNTEEEVDYFLKKIEEILSFL 364 TMalign alignment (TM-score: 0.49 Raw score:78.95) d1o4ua1 1 --------------------V------------------------A-TTTRRFAEK-LKH 14 : : ::::::::: ::: d1eg5a_ 1 MRVYFDNNATTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVS 60 d1o4ua1 15 --AKIA-A-TRKILPGLG--VLQK---IAVVHGGGDC-VM--------I---------KD 47 ::: : :::: : : : :: : :: d1eg5a_ 61 PS-EIFFTSCATE----SIN---WILK---------TVAETFEKRKRTIITTPIEHKAVL 103 d1o4ua1 48 NHLKMYGSAERAVQEVRKIIPFTTKIEVEV-E-----N-L-EDALRAVEAGADIVMLDNL 99 ::: :: : :::::: :::: : : : ::::: ::::::::::::: d1eg5a_ 104 ETM-KY--L--SMKGFK---------VKYVPVDSRGVVKLEELEKL-VDEDTFLVSIMAA 148 d1o4ua1 100 ------SPEEVKDISRRIKDINPNVIVEVSGG-ITE-ENVSLYDFETVDVISSSRLTL-Q 150 :: ::::::::::::::::::::::: ::: :::: :::::::::::::::: : d1eg5a_ 149 NNEVGTIQ-PVEDVTRIVKKKNKETLVHVDAVQTIGKIPFS-LEKLEVDYASFSAHKFHG 206 d1o4ua1 151 E-----------------------------------V--FV------------------- 154 : : :: d1eg5a_ 207 PKGVGITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHME 266 d1o4ua1 155 ------------------------------------------------------------ 155 d1eg5a_ 267 KLRSKLVSGLMNLGAHIITPLEISLPNTLSVSFPNIRGSTLQNLLSGYGIYVSTHVLDAM 326 d1o4ua1 155 --------------------------------------DLSLEIQR 162 d1eg5a_ 327 GVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSFL-------- 364 HHsearch alignment (Probability: 0.74 E-value:0.00) d1o4ua1 15 AKIAATRKILPGLGVLQKIA--VVHGGGDCVMIKDN-HLKMYGSAERAVQEVRKIIPFTT 71 :::::::::::::::::::: :::::::::::::: :::::: ::::::: :: :: d1eg5a_ 62 SEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLE----TMKYLSM-KG-FK 115 d1o4ua1 72 KIEVEVE-----NLEDALRAVEAGADIVMLDNL-----SPEEVKDISRRIKDINPNVIVE 121 ::::::: ::::::::::::::::::::: :::::::::::::::::::::: d1eg5a_ 116 VKYVPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVH 175 d1o4ua1 122 VSGGITEENV-SLYDFETVDVISSSRL 147 :::::::::: :::::::::::::::: d1eg5a_ 176 VDAVQTIGKIPFSLEKLEVDYASFSAH 202