Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T515_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1pz1a_ | Putative oxidoreductase YhdN | NAD(P)-linked oxidoreductase | TIM beta/alpha-barrel | α/β |
| Hit | d1o7d.3 | Lysosomal alpha-mannosidase | Glycoside hydrolase/deacetylase | 7-stranded beta/alpha barrel | α/β |
Query <-- 0.744 --> IntermediateDALI alignment (Z-score: 8.9 Raw score:955.20) query 1 mietpyylidkakltrnmeriAHVR-----eksgaKALLALKCF-----------aTWSV 44 :::: ::::::::: :::: d1pz1a_ 1 ---------------------MEYTsiadtgieasRIGLGTWAIggtmwggtdektSIET 39 query 45 FDLMR-DYMDGTTSSS----LFEVRLGRERF-------gKETHAYSVA------------ 80 ::::: :::::::::: ::::::::::: ::::::::: d1pz1a_ 40 IRAALdQGITLIDTAPaygfGQSEEIVGKAIkeymkrdqVILATKTALdwknnqlfrhan 99 query 81 --yGDNEIDEVVSH-----ADKIIFNSIS-------QLERFADKA---AGIARGLRlnpq 123 ::::::::::: :::::::::: ::::::::: :::::::: d1pz1a_ 100 rarIVEEVENSLKRlqtdyIDLYQVHWPDplvpieeTAEVMKELYdagKIRAIGVS---- 155 query 124 rlGEWDvPKVERVM--DRINGFMIHNncenkdfglFDRMlGEIEERFGALIA-RVDWVSL 180 :::: ::::::: :::::::::: :::: :::::::::::: ::::::: d1pz1a_ 156 --NFSI-EQMDTFRavAPLHTIQPPY---------NLFE-REMEESVLPYAKdNKITTLL 202 query 181 GGGI--HFTGD---------------------------------------------DYPV 193 :::: ::::: :::: d1pz1a_ 203 YGSLcrGLLTGkmteeytfegddlrnhdpkfqkprfkeylsavnqldklaktrygkSVIH 262 query 194 DAFSARLRAFSdrygvqIYLEPGE--asITKSttlevtvldtlynknlaivdssieahml 251 ::::::::::: ::::::: :::: d1pz1a_ 263 LAVRWILDQPG-----aDIALWGArkpgQLEA---------------------------- 289 query 252 dlliyretakvlpnegshsymicgksclagdvfgefrfaeelkvgdrisfqdaagytmvk 311 d1pz1a_ 290 -----------------------------------------------------lseitgw 296 query 312 knwfngvkmpaiaireldgsvrtvreftyadyeqsls 348 d1pz1a_ 297 tlnsedqkdintilentisdpvgpefmapptreeipg 333 FAST alignment (Normalized score: 3.92 Raw score:1333.00) query 1 MIETPYYLIDKAKLTRNMERIAHVREKSGA--------------KALLALKCFA------ 40 ::::::::: d1pz1a_ 1 ------------------------------MEYTSIADTGIEASRIGLGTWAI-GGTMWG 29 query 41 ------TWSVFDLMRD-YMDGTTSS-----SLFEVRLGRERFG----------KETHAYS 78 :::::::::: ::::::: :::::::::: :::::: d1pz1a_ 30 GTDEKTSIETIRAALDQGITLIDT-APAYGFGQSEEIVGK---AIKEYMKRDQVILATK- 84 query 79 VAY------------------GDNEIDEVVS-----HADKIIFNS-------ISQLERFA 108 :::::::::: ::::::::: :::::::: d1pz1a_ 85 ---TALDWKNNQLFRHANRARIVEEVENSLKRLQTDYIDLYQVHWPDPLVPIEETAEVMK 141 query 109 DKAAG----IARGLRLNPQRLGE--WDVPKVERVMD--RINGFMIHNNCENKDFGLFDRM 160 :::: ::::: ::::::::::: :::::::: d1pz1a_ 142 ELYD-AGKIRAIGV---------SNFSIEQMDTFRAVAPLHTIQPP-------------- 177 query 161 ----LGEIEERFGALIARV-DWVSLGGGIHFTGDDYPV---------------------- 193 ::::::::::::::: ::::: d1pz1a_ 178 YNLFEREMEESVLPYAKDNKITTLL-------------YGSLCRGLLTGKMTEEYTFEGD 224 query 194 ----------------------------------DAFSARLRAFSDRYGVQ----IYLEP 215 :::::::::::: ::::: d1pz1a_ 225 DLRNHDPKFQKPRFKEYLSAVNQLDKLAKTRYGKSVIHLAVRWILD-----QPGADIALW 279 query 216 GEASITKSTTLEVTVLDTLYNKNLAIVDSSIEAHMLDLLIYRETAKVLPNEGSHSYMICG 275 d1pz1a_ 280 ------------------------------------------------------------ 280 query 276 KSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTV 335 d1pz1a_ 280 ------------------------------------------------------------ 280 query 336 REFTYADYEQSLS----------------------------------------------- 348 d1pz1a_ 280 -------------GARKPGQLEALSEITGWTLNSEDQKDINTILENTISDPVGPEFMAPP 326 query 349 ------- 349 d1pz1a_ 327 TREEIPG 333 TMalign alignment (TM-score: 0.37 Raw score:128.42) query 1 -MIETPYYLIDKAKLTRNMERIAHVREKSGA---K-ALLALKCFA-----------TWSV 44 : : :::::: : ::::::::: d1pz1a_ 1 M-----------------E---Y--TSIADTGIEASRIGLGTWAIGGTMWGGTDEK---- 34 query 45 FDLMRDYMDGTTSSSLFEVRLGRERFGKETHAY--------SVAYGDNEIDEVVSHADKI 96 :::::::::::: ::::::: ::::::::::::::::::: d1pz1a_ 35 -------------TSIETIRAALDQ-GITLIDTAPAYGFGQSEEIVGKAIKEYMKRDQVI 80 query 97 IFNSISQLERFADKAAGIARGLRLNPQRL--------G---EWDVPKVE-RVM---DRIN 141 : : ::::::: : :::::::: :: :::: d1pz1a_ 81 L-------------------A-TKTALDWKNNQLFRHANRARIVEEVENS-LKRLQTDYI 119 query 142 GFMIHNNCENKDFGL--FDRMLGEIEERFGALIARV-DWVSLGG---------------- 182 :::::::: : ::::::::::::::::: ::::::: d1pz1a_ 120 DLYQVHWP------DPL--VPIEETAEVMKELYDAGKIRAIGVSNFSIEQMDTFRAVAPL 171 query 183 ---GIHFT---G--DDYPVDAFSARLRAFSDRYGVQIYLEPGEASITK-STTLEVTVLDT 233 ::::: : ::::::::::::: : ::::: :::: ::::::: d1pz1a_ 172 HTIQPPYNLFEREMEESVLPYAKDNKI---------T-TLLYG-SLCRGLLTGKMT---- 216 query 234 LYNKNLAIVDSSIEA--HMLDLLIYRETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAE 291 : ::::: :::: ::::: ::::: d1pz1a_ 217 --------E-EYTFEGD--DLRN--HDPKF----------------------QKPRF--- 238 query 292 ELKVGDRISFQDAAGYTMVKKNWFNGVKMP-AIAIRELDGSVRTVR-------------- 336 ::::::: : :::::::::::::: d1pz1a_ 239 ------KEYLSAV----------------NQ-LDKLAKTRYGKSVIHLAVRWILDQPGAD 275 query 337 ---------EFTYAD--------------------------------------------- 342 : d1pz1a_ 276 IALWGARKP-----GQLEALSEITGWTLNSEDQKDINTILENTISDPVGPEFMAPPTREE 330 query 343 ---YEQSLS 348 d1pz1a_ 331 IPG------ 333 HHsearch alignment (Probability: 0.04 E-value:0.15) query 58 SSLFEVRLGRERFGKE-THAYSVAYGDNEIDEVVS-HADKIIFNSISQLERFADKAAGIA 115 :::::::::::::::: :::::::::::::::::: :::::::::::::::::::::::: d1pz1a_ 258 KSVIHLAVRWILDQPGADIALWGARKPGQLEALSEITGWTLNSEDQKDINTILENTISDP 317 query 116 RGLR 119 :::: d1pz1a_ 318 VGPE 321
Intermediate <-- 0.757 --> HitDALI alignment (Z-score: 6.2 Raw score:846.60) d1pz1a_ 1 meytsiadTGIEA--------sRIGLGTWaiGGTM---------------wGGTDEKTSI 37 ::::: ::::::: :::: ::::::::: d1o7d.3 1 -------gYKTCPkvkpdmlnvHLVPHTH--DDVGwlktvdqyfygiynniQPAGVQYIL 51 d1pz1a_ 38 ETIRAALDQ--GITLIDTAPaygfGQSEEIV----gkaiKEYMK-RDQV--ILAT----K 84 ::::::::: ::::::::: ::::::: ::::: :::: :::: : d1o7d.3 52 DSVISSLLAnpTRRFIYVEI----AFFSRWWrqqtnatqKIVRElVRQGrlEFANggwvM 107 d1pz1a_ 85 TALdwknnqlfRHANRARIVEEVENSLKRL--QTDY---IDLYQV-HWPDplvpIEETAE 138 ::: ::::::::::::::::::: :::: :::::: :::: :::::: d1o7d.3 108 NDE--------ATTHYGAIIDQMTLGLRFLeeTFGSdgrPRVAWHiDPFG---hSREQAS 156 d1pz1a_ 139 VMKELYdagkIRAIGVSNFSIE----------qmdtFRAV--------APLHTIQPPynl 180 :::::: :::::::::::: :::: ::::::::: d1o7d.3 157 LFAQMG----FDGFFFGRLDYQdkkvrkktlqmeqvWRAStslkpptaDLFTSVLPN--- 209 d1pz1a_ 181 feremeesvlpyakdnkittllyGSLC-----rGLLTGkmteeytfegddlrnhdpkfqk 235 :::: ::::: d1o7d.3 210 ---------------------myNPPEglcwdmLCADK---------------------- 226 d1pz1a_ 236 prfkeylsavnqldKLAKtrYGKSvihlavrWILD--QPGA----DIALWG----ARKPG 285 :::: :::: :::: :::: :::::: ::::: d1o7d.3 227 -----pvvedtrspEYNA--KELV---ryflKLATdqGKLYrtkhTVMTMGsdfqYENAN 276 d1pz1a_ 286 QL-EALSEIT--GWTLN--sedqkdintilentisdpvgpefmapptreeipg 333 :: ::::::: ::::: d1o7d.3 277 TWfKNLDKLIqlVNAIRvnvlystpacylwelnkanlswsvkkddffpyadgp 329 FAST alignment (Normalized score: 3.09 Raw score:1021.00) d1pz1a_ 1 MEYTSIADTGIEAS---------------RIGLGTWA--IGGTMW--------------- 28 :::::: :::: d1o7d.3 1 --------------GYKTCPKVKPDMLNVHLVPHT--HDDVGW--LKTVDQYFYGIYNNI 42 d1pz1a_ 29 GGTDEKTSIETIRAALDQGIT-----LIDTAPAYGFGQ-SEEIVGKAIKEYMKR------ 76 ::::::::::::::::: :::: :::::::::: d1o7d.3 43 QPAGVQYILDSVISSLL----ANPTRRFIY--------VEIAFFSRWWR-----QQTNAT 85 d1pz1a_ 77 ----------DQVILATKTALDWKNNQLFR-----------HANRARIVEEVENSLKRLQ 115 ::::: ::::::::::::::::: d1o7d.3 86 QKIVRELVRQGRLEF---------------ANGGWVMNDEATTHYGAIIDQMTLGLRF-- 128 d1pz1a_ 116 T--------DYIDLYQVHWPDPLVP----IEETAEVMKELYDAG-KIRAIGVSNFSIEQM 162 :::::::::: :::::::::: :::::::::::::: d1o7d.3 129 -LEETFGSDGRPRVAWHID------PFGHSREQASLFAQ-----MGFDGFFFGRLDYQD- 175 d1pz1a_ 163 DTFRAVAPL----------------------------HTIQPPYNLFEREMEESVLPYAK 194 :::: d1o7d.3 176 ---------KKVRKKTLQMEQVWRASTSLKPPTADLFTSVL------------------- 207 d1pz1a_ 195 DNKITTLLYGSLCRGLLTGKMTEEYTFEGDDLRNHDPKFQKPRFKEYLSAVNQLDKLAKT 254 d1o7d.3 208 ------------------------------------------------------------ 208 d1pz1a_ 255 RYGK------------------------------------SVIHLAVRWILDQPGA---- 274 :::::::::::: d1o7d.3 208 ----PNMYNPPEGLCWDMLCADKPVVEDTRSPEYNAKELVRYFLKLATDQGK----LYRT 259 d1pz1a_ 275 --DIALWGAR---------KPGQLEALSEITGWTLNSEDQKDINTILENTISDPVGPEFM 323 :::: ::::::::::::: d1o7d.3 260 KHTVMT----MGSDFQYENANTWFKNLDKLIQ---------------------------- 287 d1pz1a_ 324 APPTREEIPG------------------------------------------ 333 d1o7d.3 288 ----------LVNAIRVNVLYSTPACYLWELNKANLSWSVKKDDFFPYADGP 329 TMalign alignment (TM-score: 0.49 Raw score:162.04) d1pz1a_ 1 MEYTSIADTGIEAS--------RIGLGTWAIGGTM--------------WGGTDEKTSIE 38 : :::::: ::::::::::::: ::::::::::: d1o7d.3 1 -----G--YKTCPKVKPDMLNVHLVPHTHDDVGWLKTVDQYFYGIYNNIQPAGVQYILDS 53 d1pz1a_ 39 TIRAALDQ-GITLIDTAPAYGFGQSEEIVG-K---AIKEYMK-RDQV--ILATKT-ALDW 89 :::::::: ::::::::: :::::::: : ::::::: :::: :::::: ::: d1o7d.3 54 VISSLLANPTRRFIYVEI----AFFSRWWRQQTNATQKIVRELVRQGRLEFANGGWVMN- 108 d1pz1a_ 90 KNNQLFRHANRARIVEEVENSLKRL--QTDY--IDLYQVH--WPDPLVPIEETAEVMKEL 143 ::::::::::::::::::::: :::: ::::::: :::: : : ::::::::: d1o7d.3 109 ----DEATTHYGAIIDQMTLGLRFLEETFGSDGRPRVAWHIDPFGH-S-R-EQASLFAQM 161 d1pz1a_ 144 YDAGKIRAIGVS-NF---S---I----E--QMDTFR----AV-APLHTIQPPYNLFEREM 185 : : ::::: :: : : : :::::: :: :::::::::: d1o7d.3 162 G----F-DGFFFGRLDYQDKKVRKKTLQMEQVWRASTSLKPPTADLFTSVLPN------- 209 d1pz1a_ 186 EESVLPYAKDNKITTLLYGSLCRGLLTGKMTEEYTFEGDDLRNHDPKFQKPRFKEYLSAV 245 :::::: :::::: : : : : d1o7d.3 210 ----------------MYNPPE--GLCWDM-----L-----C--------------A--D 225 d1pz1a_ 246 N-QLD--KLA--KTRYGKSVIHLAVRWILDQP--G---ADIALWG----ARKPGQ-LEAL 290 : :: : :::::::::::::::::::: : ::::::: :::::: :::: d1o7d.3 226 KP-VVED--TRSPEYNAKELVRYFLKLATDQGKLYRTKHTVMTMGSDFQYENANTWFKNL 282 d1pz1a_ 291 SEITG-WTLNS--------------------------------EDQKDINTILENTISDP 317 ::::: ::::: d1o7d.3 283 DKLIQLVNAIRVNVLYSTPACYLWELNKANLSWSVKKDDFFPY----------------- 325 d1pz1a_ 318 VGPEF-MAPPTREEIPG 333 ::: d1o7d.3 326 --ADGP----------- 329 HHsearch alignment (Probability: 0.03 E-value:0.04) d1pz1a_ 102 RIVEEVENSLKRLQTDYIDLYQVHWPDPLVPIEETAEVMKE----LYDA-GK--IR---- 150 ::::::::::::::::::::::::::::::::::::::::: :::: :: :: d1o7d.3 84 ATQKIVRELVRQGRLEFANGGWVMNDEATTHYGAIIDQMTLGLRFLEETFGSDGRPRVAW 143 d1pz1a_ 151 ---AIGVSNFSIEQMDTFRAVAPLHTIQPPYNLFEREM 185 :::::::::: :::::::::::::::::::::::: d1o7d.3 144 HIDPFGHSREQAS-LFAQMGFDGFFFGRLDYQDKKVRK 180