Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T515_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d2tpsa_ | Thiamin phosphate synthase | Thiamin phosphate synthase | TIM beta/alpha-barrel | α/β |
| Hit | d1jrla_ | Thioesterase I, TAP | SGNH hydrolase | Flavodoxin-like | α/β |
Query <-- 0.821 --> IntermediateDALI alignment (Z-score: 9.1 Raw score:858.90) query 1 ---------------mietpyylidkakltRNMERIAHVREKSGAKALLALKC------f 39 ::::::::::::::::::::::: d2tpsa_ 1 hgirmtrisremmkellsvyfimgsnntkaDPVTVVQKALKGGATLYQFREKGgdaltge 60 query 40 aTWSVFDLMRDYM-----DGTTSSslfEVRLGRERfGKETHAYSVAYGdnEIDEVVSHA- 93 :::::::::::: :::::: :::::::: :::::::::::: ::::::::: d2tpsa_ 61 aRIKFAEKAQAACreagvPFIVND---DVELALNL-KADGIHIGQEDA--NAKEVRAAIg 114 query 94 --DKIIFNSI-SQLERFADKAagIARGLRLNPQ-------RLGEWDVPKVERVM---DRI 140 :::::::: :::::::::: :::::::::: :::::::::::::: ::: d2tpsa_ 115 dmILGVSAHTmSEVKQAEEDG--ADYVGLGPIYptetkkdTRAVQGVSLIEAVRrqgISI 172 query 141 NGFMIHNncenkdfglfdrMLGEIEeRFGALiaRVDWVSLggGIHFTGddYPVDAFSARL 200 ::::::: :::::: ::::: ::::::: :::::: :::::::::: d2tpsa_ 173 PIVGIGG-----------iTIDNAA-PVIQA--GADGVSM--ISAISQ-aEDPESAARKF 215 query 201 RAFSDRYGvqiylepgeasitksttlevtvldtlynknlaivdssieahmldlliyreta 260 :::::::: d2tpsa_ 216 REEIQTYK---------------------------------------------------- 223 query 261 kvlpnegshsymicgksclagdvfgefrfaeelkvgdrisfqdaagytmvkknwfngvkm 320 d2tpsa_ 224 ------------------------------------------------------------ 224 query 321 paiaireldgsvrtvreftyadyeqsls 348 d2tpsa_ 224 -------------------------tgr 226 FAST alignment (Normalized score: 3.17 Raw score:888.50) query 1 MIETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYM-------- 52 d2tpsa_ 1 ----------------------------------------------------HGIRMTRI 8 query 53 ----------DGTTSS--------SLFEVRLGRERF-GKETHAYSVAY-----------G 82 ::::: ::::::::::: ::::::: : d2tpsa_ 9 SREMMKELLSVYFIM-GSNNTKADPVTVVQKALKG-GATLYQFR----EKGGDALTGEAR 62 query 83 DNEIDEVVSHA-----DKIIFN-SISQLERFADKAAGIA---RGLRLNPQRLGE--WDVP 131 :::::::::: :::::: ::::::: ::::::: :::: d2tpsa_ 63 IKFAEKAQAA-CREAGVPFIVNDDVELALN---------LKADGIHIGQ-----EDANAK 107 query 132 KVERVMDRI--NGFMIHNNCENKDFGL--FDRMLGEIEERFGALIA-RVDWVSLGGGIHF 186 :::::: :::::: :::::::::: ::::::: d2tpsa_ 108 EVRAAI---GDMILGVS----------AHTMSEVKQAEE-------DGADYVGL------ 141 query 187 TGDDYPVDA----------------FSARLRAFSD-RYGVQIYLEPGEASITKSTTLEVT 229 :::::::::: ::::::::: :::: d2tpsa_ 142 ---------GPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGI-GGIT---------- 181 query 230 VLDTLYNKNLAIVDSSIEAHMLDLLIYRETAKVLPNEGSHSYMICGKSCLAGDVFGEFRF 289 d2tpsa_ 182 ------------------------------------------------------------ 182 query 290 AEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVREFTYADYEQSLS- 348 d2tpsa_ 182 -----------------------------------------------------------I 182 query 349 -------------------------------------------- 349 d2tpsa_ 183 DNAAPVIQAGADGVSMISAISQAEDPESAARKFREEIQTYKTGR 226 TMalign alignment (TM-score: 0.41 Raw score:143.89) query 1 ----------------------------MIETPYYLIDKAKLTRNMERIAHVREKSGAKA 32 ::::::::::::::::::: d2tpsa_ 1 HGIRMTRISREMMKELLSVYFIMGSNNT-------------KADPVTVVQKALKGGATLY 47 query 33 LLALKC--F-A---TWSVFDLMRDYM-----DGTTSSSLFEVRLGRERFGKETHAYSVAY 81 :::::: : : :::::::::::: :::::: : :::::::::::::::::: d2tpsa_ 48 QFREKGGDALTGEARIKFAEKAQAACREAGVPFIVND---D-VELALNLKADGIHIGQED 103 query 82 GDNEIDEVVS-H--ADKIIFN-SISQLERFADKAAGIARGLRLNPQ--------RLGE-W 128 : ::::::: : ::::::: :::::::::::: :::::::::: :::: : d2tpsa_ 104 A--NAKEVRAAIGDMILGVSAHTMSEVKQAEEDG--ADYVGLGPIYPTETKKDTRAVQGV 159 query 129 D-VPKVERVMDRINGFMIHNNCENKDFGLFDRMLGEIEERFGALIARVDWVSLGGGIHFT 187 : ::::::::::::::::::: ::: : ::::::::: : :::::::::: d2tpsa_ 160 SLIEAVRRQGISIPIVGIGGI--------TID--N-AAPVIQAGA--D--GVSMISAISQ 204 query 188 GDDYPVDAFSARLRAFSDRYGV--QIYLEPGEASITKSTTLEVTVLDTLYNKNLAIVDSS 245 : ::::::::::::::::::: d2tpsa_ 205 A--EDPESAARKFREEIQTYKTGR------------------------------------ 226 query 246 IEAHMLDLLIYRETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAA 305 d2tpsa_ 227 ------------------------------------------------------------ 227 query 306 GYTMVKKNWFNGVKMPAIAIRELDGSVRTVREFTYADYEQSLS 348 d2tpsa_ 227 ------------------------------------------- 227 HHsearch alignment (Probability: 0.39 E-value:0.03) query 9 IDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSSSLFEVRLGRE 68 :::::::::::::::::::::::::: :::::::::::::::::::::::::: :: d2tpsa_ 57 LTGEARIKFAEKAQAACREAGVPFIV----NDDVELALNLKADGIHIGQEDANAKE--VR 110 query 69 RFGKETHAYSVAYGDNEIDEVVSHADKII----------------FNSISQLERFADKAA 112 ::::::::::::::::::::::::::::: ::::::::::::::: d2tpsa_ 111 AAIGDMILGVSAHTMSEVKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGI 170 query 113 GIARGLRLNPQRLGEWDVPKVERVMDRINGFMIHNNCENKDFGLFDRMLGEIEERFGAL 171 :::::: ::::::::::::::::::::: ::::::::::::::::::::::::: d2tpsa_ 171 SIPIVG-----IGGITIDNAAPVIQAGADGVS--MISAISQAEDPESAARKFREEIQTY 222
Intermediate <-- 1.298 --> HitDALI alignment (Z-score: 4.1 Raw score:437.00) d2tpsa_ 1 hgirmtrisremmkellSVYFIMGS-----------------------------nNTKA- 30 :::::::: :::: d1jrla_ 1 ----------------aDTLLILGDslsagyrmsasaawpallndkwsktsvvnaSISGd 44 d2tpsa_ 31 ---DPVTVVQKALKGG-ATLYQFREKGGD---alTGEARIKFAEKAQAACREAGVPFIVN 83 ::::::::::::: :::::::::::: :::::::::::::::::::::::::: d1jrla_ 45 tsqQGLARLPALLKQHqPRWVLVELGGNDglrgfQPQQTEQTLRQILQDVKAANAEPLLM 104 d2tpsa_ 84 D------------------DVELALNLKAdGIHI-GQEDanakevraaigdmilgvsaht 124 : :::::::::: :::: :::: d1jrla_ 105 QirppanygrryneafsaiYPKLAKEFDV-PLLPfFMEE--------------------- 142 d2tpsa_ 125 msevkqaeedgadyvglgpiyptetkKDTRAVqgvslieavrrqgisiPIVGiggitidn 184 :::::: :::: d1jrla_ 143 --------------vylkpqwmqddgIHPNRD------aqpfiadwmaKQLQ-------- 174 d2tpsa_ 185 aapviqagadgvsmisaisqaedpesaarkfreeiqtyktgr 226 d1jrla_ 175 --------------------------------------plvn 178 FAST alignment (Normalized score: 3.69 Raw score:739.00) d2tpsa_ 1 HGIRMTRISREMMKELL-SVYFIMGSNNTKA----------------------------- 30 :::::::: d1jrla_ 1 -----------------ADTLLILGD-----SLSAGYRMSASAAWPALLNDKWSKTSVVN 38 d2tpsa_ 31 ---------DPVTVVQKALK-GGATLYQFREKGGDALT--------GEARIKFAEKAQAA 72 ::::::::::: :::::::::::: :::::::::::::: d1jrla_ 39 ASISGDTSQQGLARLPALLKQHQPRWVLVELGG-----NDGLRGFQPQQTEQTLRQILQD 93 d2tpsa_ 73 CREAGVPFIVND---------------DVELALNLKA------DGIHIGQEDANAKEVRA 111 ::::::::::: ::::::: :::: d1jrla_ 94 VKAANAEPLLM-QIRPPANYGRRYNEAFSAIYPK---LAKEFDVPLL------------- 136 d2tpsa_ 112 AIGDMILGVSAHTMSEVKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGIS 171 d1jrla_ 137 ------------------------------------------------------------ 137 d2tpsa_ 172 IPIVGIGGITIDNAAPVIQAGADGVSMISAISQAEDPESAARKFREEIQTYKTGR----- 226 d1jrla_ 137 -------------------------------------------------------PFFME 141 d2tpsa_ 227 ------------------------------------- 227 d1jrla_ 142 EVYLKPQWMQDDGIHPNRDAQPFIADWMAKQLQPLVN 178 TMalign alignment (TM-score: 0.37 Raw score:83.65) d2tpsa_ 1 HGIRMTRISREMMKELLSVYFIMG-------------------------------S-NNT 28 :: ::::::: : ::: d1jrla_ 1 --------------AD-TLLILGDSLSAGYRMSASAAWPALLNDKWSKTSVVNASISGDT 45 d2tpsa_ 29 -KADPVTVVQKALKGG-ATLY-QFREKG--GDALTGEARIKFAEKAQAACREAGVPFIVN 83 :::::::::::::: :::: :::::: :::::::::::::::::::::::::::::: d1jrla_ 46 S-QQGLARLPALLKQHQPRWVLVELGGNDGLRGFQPQQTEQTLRQILQDVKAANAEPLLM 104 d2tpsa_ 84 D---------------D--VELALNLKADGIHI-GQEDANAKEVRAAIGDMILGVSAHT- 124 : : :::::::::::::: :::: :::: d1jrla_ 105 QIRPPANYGRRYNEAFSAIYPKLAKEFDVPLLPFFMEE-----------------VYLKP 147 d2tpsa_ 125 -MSEVKQAEEDGADYVGLGPIYPTE-TKKDTRAVQGVSLIEAVRRQGISIPIVGIGGITI 182 : ::: ::::::::::::: : ::::: d1jrla_ 148 Q------------------W--MQDD-GIHPNRDAQPFIA--D------WMAKQ------ 172 d2tpsa_ 183 DNAAPVIQAGAD----GVSMISAISQAEDPESAARKFREEIQTYKTGR 226 :: d1jrla_ 173 ----------LQPLVN-------------------------------- 178 HHsearch alignment (Probability: 0.78 E-value:0.00) d2tpsa_ 27 NTKADPVTVVQKALKGGATLYQFREKGGDALTGEARIKFAEKAQAACREAGVPFIVNDD- 85 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: d1jrla_ 82 QTEQTLRQILQDVKAANAEPLLMQIRPPANYGRRYNEAFSAIYPKLAKEFDVPLLPFFME 141 d2tpsa_ 86 --VELALNLKADGIHIGQEDA 104 ::::::::::::::::::: d1jrla_ 142 EVYLKPQWMQDDGIHPNRDAQ 162