Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T515_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1p1xa_ | Deoxyribose-phosphate aldolase DeoC | Aldolase | TIM beta/alpha-barrel | α/β |
| Hit | d1p1ma2 | Hypothetical protein TM0936, probable catalytic domain | Metallo-dependent hydrolases | TIM beta/alpha-barrel | α/β |
Query <-- 0.888 --> IntermediateDALI alignment (Z-score: 10.1 Raw score:992.70) query 1 mietpyylidkakltrnmeriAHVReksgaKALLALKC----faTWSV-FDLMRD---YM 52 :::: :::::::: :::: :::::: :: d1p1xa_ 1 --------------mtdlkasSLRA---lkLMDLTTLNdddtdeKVIAlCHQAKTpvgNT 43 query 53 DGTTSSSlFEVRLGRERF------GKETHAYSV---------AYGDnEIDEVVS-HADKI 96 ::::::: :::::::::: ::::::::: :::: ::::::: ::::: d1p1xa_ 44 AAICIYP-RFIPIARKTLkeqgtpEIRIATVTNfphgnddidIALA-ETRAAIAyGADEV 101 query 97 IFNS-------------ISQLERFADKAA--GIARGLRLNPQ--rlgeWDVPKVERVMD- 138 :::: :::::::::::: ::::::::::: ::::::::::: d1p1xa_ 102 DVVFpyralmagneqvgFDLVKACKEACAaaNVLLKVIIETGelkdeaLIRKASEISIKa 161 query 139 RINGFMIHnncenkdfglfdrMLGEIEeRFGALI-----ARVDWVSLGGGIHFTgddypv 193 :::::::: :::::: :::::: ::::::::::::::: d1p1xa_ 162 GADFIKTS-----tgkvavnaTPESAR-IMMEVIrdmgvEKTVGFKPAGGVRTA------ 209 query 194 dAFSARLRAFSDRYG-------vQIYLEPGEASITksttlevtvldtlynknlaivdssi 246 :::::::::::::: :::::::::::: d1p1xa_ 210 -EDAQKYLAIADELFgadwadarHYRFGASSLLAS------------------------- 243 query 247 eahmldlliyretakvlpnegshsymicgksclagdvfgefrfaeelkvgdrisfqdaag 306 d1p1xa_ 244 ------------------------------------------------------------ 244 query 307 ytmvkknwfngvkmpaiaireldgsvrtvreftyadyeqsls 348 d1p1xa_ 244 -----------------------------------llkalgh 250 FAST alignment (Normalized score: 3.13 Raw score:922.50) query 1 MIETPY---------------------YLIDKAKLTRNMERIAHVREKSG-------AKA 32 ::::::::::::::: ::: d1p1xa_ 1 ------MTDLKASSLRALKLMDLTTLNDDDTDEKVIALCHQA--------KTPVGNTAAI 46 query 33 LLALKCFATWSVFDLMRDYM-----------DGTTSS------------SLFEVRLGRER 69 :: :::::::::: :::: :::::::::: d1p1xa_ 47 CI------YPRFIPIARK--TLKEQGTPEIRIATV--TNFPHGNDDIDIALAETRAAIA- 95 query 70 F--GKETHAYSVAY-----------------GDNEIDEVVSHADKIIFNSISQLERFADK 110 ::::::: :::::::::: d1p1xa_ 96 -YGADEVDVV----FPYRALMAGNEQVGFDLVKACKEACAA------------------- 131 query 111 AAGIARGLRLNPQRL------------GEWDVPKVERVMD--------RINGFMIHNNCE 150 :::::::::: :::::: d1p1xa_ 132 ---------------ANVLLKVIIETGELKDEALIRK---ASEISIKAGADFIK------ 167 query 151 NKDFGL----------FDRMLGEIEERFGALIARV----------DWVSLGGGIHFTGDD 190 :::::::::: ::::::::: d1p1xa_ 168 ------TSTGKVAVNATPESARIMME---------VIRDMGVEKTVGFKPAGGV------ 206 query 191 YP-VDAFSARLRAFSDRYGV----------QIYLEPGEASITKSTTLEVTVLDTLYNKNL 239 :::::::::::::: :::::::: d1p1xa_ 207 --RTAEDAQKYLAIADE---LFGADWADARHYRFGASS---------------------- 239 query 240 AIVDSSIEAHMLDLLIYRETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRI 299 d1p1xa_ 240 ------------------------------------------------------------ 240 query 300 SFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVREFTYADYEQSLS----------- 348 d1p1xa_ 240 -------------------------------------------------LLASLLKALGH 250 TMalign alignment (TM-score: 0.43 Raw score:149.66) query 1 ---MIETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKC--F---ATWSVFDLMRD-- 50 :::::::::::::::::: : ::::::::::: d1p1xa_ 1 MTD--------------------LKASSLRALKLMDLTTLNDDDTDEKVIALCHQAKTPV 40 query 51 Y-MDGTTSSSLFEVRLGRERF-----G-KETHAYSVA---------YGDNEIDEVVS-HA 93 : :::::: :::::::::::: : ::::::::: ::: ::::::: :: d1p1xa_ 41 GNTAAICI-YPRFIPIARKTLKEQGTPEIRIATVTNFPHGNDDIDIALA-ETRAAIAYGA 98 query 94 DKIIFNS------------I-SQLERFADKAA--GIARGLRLNPQRLG---EWDVPKVER 135 ::::::: : ::::::::::: :::::::::::::: ::::::::: d1p1xa_ 99 DEVDVVFPYRALMAGNEQVGFDLVKACKEACAAANVLLKVIIETGELKDEALIRKASEIS 158 query 136 VMDRINGFMIHNN-CEN-KDFGLFDRMLGEIEERFGALIAR-VDWVSLGGGIHFTGDDYP 192 ::::::::::::: ::: ::::::::::::::::::: ::::::::::::: :: d1p1xa_ 159 IKAGADFIKTSTGKVAVN----ATPESARIMMEVIRDMGVEKTVGFKPAGGVRTA---ED 211 query 193 VDAFSARLRAFSDRYGV---QIYLEPGEASIT-KS-----TTLEVTVLDTLYNKNLAIVD 243 ::::::::::::::::: :::::::::::: : d1p1xa_ 212 AQKYLAIADELFGADWADARHYRFGASSLLASL-LKALGH-------------------- 250 query 244 SSIEAHMLDLLIYRETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQD 303 d1p1xa_ 251 ------------------------------------------------------------ 251 query 304 AAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVREFTYADYEQSLS 348 d1p1xa_ 251 --------------------------------------------- 251 HHsearch alignment (Probability: 0.04 E-value:0.12) query 83 DNEIDEVVSHADKIIF---NSISQLERFADKAAG---IARGLRLNPQRLGEWDVPKVER- 135 :::::::::::::::: ::::::::::::::: :::::::::::::::::::::: d1p1xa_ 5 KASSLRALKLMDLTTLNDDDTDEKVIALCHQAKTPVGNTAAICIYPRFIPIARKTLKEQG 64 query 136 --VMDRINGFMIHNNCENKDFGLFDRMLGEIEERFGALIARVDWVSLGGGIHFTGDDYPV 193 ::::::::::::::: :::::::::::::::::::::::::::::::: ::::: d1p1xa_ 65 TPEIRIATVTNFPHGND-DIDIALAETRAAIAYGADEVDVVFPYRALMAG-----NEQVG 118 query 194 DAFSARLRAFSDRYGV--QIYLEPG 216 :::::::::::::::: ::::::: d1p1xa_ 119 FDLVKACKEACAAANVLLKVIIETG 143
Intermediate <-- 0.885 --> HitDALI alignment (Z-score: 8.2 Raw score:912.90) d1p1xa_ 1 mtdlkasslraLKLMDLTT------------------------lNDDDTDEKVIALCHQA 36 :::::::: :::::::::::::::: d1p1ma2 1 ----------aLFNTHTHApmtllrgvaedlsfeewlfskvlpiEDRLTEKMAYYGTILA 50 d1p1xa_ 37 K---TPVG-NTAAICIYprFIPIARKTLKEQGTpEIRIATVTNfphgNDDIDIalAETRA 92 : :::: :::::::: :::::::::::::: ::::::::: :::::: ::::: d1p1ma2 51 QmemARHGiAGFVDMYF--HEEWIAKAVRDFGM-RALLTRGLV----DSNGDD-gGRLEE 102 d1p1xa_ 93 AIAYG----------ADEVDVVFPYralmagneqvGFDLVKACKEACAAANVLLKVIIET 142 ::::: :::::::::: ::::::::::::::::::::::::: d1p1ma2 103 NLKLYnewngfegriFVGFGPHSPY--------lcSEEYLKRVFDTAKSLNAPVTIHLYE 154 d1p1xa_ 143 GELKdeaLIRKasEISIKAGA----DFIKTStgkvavnatpesarimmEVIRDmGVEK-T 197 :::: :::: :::::::: :::::: ::::: :::: : d1p1ma2 155 TSKE---EYDL--EDILNIGLkevkTIAAHC-------------vhlpERYFG-VLKDiP 195 d1p1xa_ 198 VGFKPAGGV-------------------------------------RTAEDAQKYLA--- 217 ::::::::: ::::::::::: d1p1ma2 196 FFVSHNPASnlklgngiapvqrmiehgmkvtlgtdgaasnnslnlfFEMRLASLLQKaqn 255 d1p1xa_ 218 -----iadelfgadwADARHyrfgassllasllkalgh 250 ::::: d1p1ma2 256 prnldvntclkmvtyDGAQA------------mgfksg 281 FAST alignment (Normalized score: 4.52 Raw score:1198.00) d1p1xa_ 1 MTDLKASSLRALKLMDLTTLNDDDTDEKVIALCHQAKTPVGNTAAICIYPRFIPIARKTL 60 d1p1ma2 1 ------------------------------------------------------------ 1 d1p1xa_ 61 KEQGTPEIR----IATVTNFPHGN----------------------------DDIDIALA 88 ::::: :::::::: d1p1ma2 1 ---------ALFNTHTHA------PMTLLRGVAEDLSFEEWLFSKVLPIEDRLTEKMAYY 45 d1p1xa_ 89 ETRAAIA----YGADEVDVVFPYRALMAGNEQVGFD--LVKACKEACAAANVLLKVIIET 142 ::::::: ::::::::: ::::::::::::::::::::: d1p1ma2 46 GTILAQMEMARHGIAGFVDM----------------YFHEEWIAKAVRDFGMRALLTRG- 88 d1p1xa_ 143 GE--LKDE--ALIRKASEISIKAGA--------DFIKTSTGKVAV-----NATPESARIM 185 :::: :::::::::::::: :::: :::::::::: d1p1ma2 89 --LVDSNGDDGGRLEENLKLYNEW-NGFEGRIFVGFG--------PHSPYLCSEEYLKRV 137 d1p1xa_ 186 MEVIRDMGVEKTVGFKPAGGVRTAE---------DAQKYLA-IADELFGADWADAR-HYR 234 :::::::: :::::: ::::::: :::: ::: d1p1ma2 138 FDTAKSLN----APVTIH-------LYETSKEEYDLEDILNIGLKE----------VKTI 176 d1p1xa_ 235 F-GASSL-LASLLKALGH------------------------------------------ 250 : :::: ::::: d1p1ma2 177 AAHCVH-LPERYF-----GVLKDIPFFVSHNPASNLKLGNGIAPVQRMIEHGMKVTLGTD 230 d1p1xa_ 251 --------------------------------------------------- 251 d1p1ma2 231 GAASNNSLNLFFEMRLASLLQKAQNPRNLDVNTCLKMVTYDGAQAMGFKSG 281 TMalign alignment (TM-score: 0.60 Raw score:149.93) d1p1xa_ 1 MTDLKASSLRALKLMDLT-TL-----------------------NDDD---T-DEKVIAL 32 : ::::::: :: :::: : ::::::: d1p1ma2 1 --------A--LFNTHTHAPMTLLRGVAEDLSFEEWLFSKVLPIEDRLTEKMAYYGTILA 50 d1p1xa_ 33 CHQAKTPVGNTAAICIYPRFIPIARKTLKEQGTPEIRIATVTNFPHGNDDIDIALAETRA 92 ::::::::::::::::: : ::::::::::::: ::::::::: :: :: :::::::: d1p1ma2 51 QMEMARHGIAGFVDMYF-H-EEWIAKAVRDFGM-RALLTRGLV---DS-NG-DDGGRLEE 102 d1p1xa_ 93 AIAYG----------ADEVDVVFPYRALMAGNEQVGFDLVKACKEACAAANVLLKVIIET 142 ::::: :::::::::::: :: ::::::::::::::::::::::: d1p1ma2 103 NLKLYNEWNGFEGRIFVGFGPHSPYLC-------SE-EYLKRVFDTAKSLNAPVTIHLYE 154 d1p1xa_ 143 GELKDEALIRKASEISIKAGA----DFIKTSTGKVAVNATPESARIMMEVIRDMGVE-KT 197 : :: :::: ::::::::: ::::: :: :::::::: ::: :: d1p1ma2 155 T-SK---EEYD-LEDILNIGLKEVKTIAAH------------CV-HLPERYFG-VLKDIP 195 d1p1xa_ 198 VGFKPAGGVRTA-ED-AQKYLAIADELFGADWADARHYRFGAS---SLLASLLKAL---- 248 :::::::::::: : ::: ::::::::::::: :::::: :::::::::: d1p1ma2 196 FFVSHNPASNLKL-GN-GIA--PVQRMIEHGMKVT--LGTDGAASNNSLNLFFEMRLASL 249 d1p1xa_ 249 --------------------------------GH 250 d1p1ma2 250 LQKAQNPRNLDVNTCLKMVTYDGAQAMGFKSG-- 281 HHsearch alignment (Probability: 0.53 E-value:0.03) d1p1xa_ 19 TLNDDDTDEKVIALCHQAKTPVGNTAAICIYPRFIPIARKTLKEQGTPEIRIATVTNFPH 78 :::::::::::::::::::: :::::::::::::::::::::::: ::::::::::: d1p1ma2 37 RLTEKMAYYGTILAQMEMAR--HGIAGFVDMYFHEEWIAKAVRDFG---MRALLTRGLVD 91 d1p1xa_ 79 GNDDIDIALAETRAAIAY--G-ADEVDVVFPYRALMAGNEQVGFDLVKACKEACAAANVL 135 :::::::::::::::::: : ::::::::::::::::::: ::::::::::::::: d1p1ma2 92 SNGDDGGRLEENLKLYNEWNGFEGRIFVGFGPHSPYLCSEE----YLKRVFDTAKSLNAP 147 d1p1xa_ 136 LKVIIETGELKDEALIRKASEISIKAGADFIKTSTGKVAVNATPESARIMMEVIRDMGVE 195 :::::: :: ::: ::: ::::::::::::::: ::::::::::::::::::::::::: d1p1ma2 148 VTIHLY--ET-SKE-EYD-LEDILNIGLKEVKTI-AAHCVHLPERYFGVLKDIPFFVSHN 201 d1p1xa_ 196 KTVGFKPAGGVRTAEDAQKYLAIADE-LFGAD 226 :::::::::::: ::::::::::: ::::: d1p1ma2 202 PASNLKLGNGIA---PVQRMIEHGMKVTLGTD 230