Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T515_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1ceoa_ | Endoglucanase CelC | (Trans)glycosidases | TIM beta/alpha-barrel | α/β |
| Hit | d1sfsa_ | Unnamed hypothetical protein | (Trans)glycosidases | TIM beta/alpha-barrel | α/β |
Query <-- 0.976 --> IntermediateDALI alignment (Z-score: 8.4 Raw score:929.10) query 1 mietpyylidkakltrnmeriahvreksgaKALLALKCF---------------ATWSVF 45 ::::::::: :::::: d1ceoa_ 1 --------------------------mvsfKAGINLGGWisqyqvfskehfdtfITEKDI 34 query 46 DLMRD-YMDGTTSSS------------------lFEVRLGRERFG---KETHAYSV---- 79 ::::: ::::::::: ::::::::::: :::::::: d1ceoa_ 35 ETIAEaGFDHVRLPFdypiiesddnvgeykedglSYIDRCLEWCKkynLGLVLDMHhapg 94 query 80 ---------------AYGDnEIDEVVSH--aDKIIFN--------------SISQLERFA 108 :::: :::::::: :::::: ::::::::: d1ceoa_ 95 stlfedpnqqkrfvdIWRF-LAKRYINErehIAFELLnqvvepdstrwnklMLECIKAIR 153 query 109 DKAAGIARGLR----LNPQrlgEWDVpkVERVMDRINGFMIHNN---------------- 148 ::::::::::: :::: :::: :::::::::::::::: d1ceoa_ 154 EIDSTMWLYIGgnnyNSPD---ELKN--LADIDDDYIVYNFHFYnpfffthqkahwsesa 208 query 149 ---------------------------------cenkDFGLFDRMLGEIEERFGAliARV 175 :::::::::::::::::: ::: d1ceoa_ 209 maynrtvkypgqyegieefvknnpkysfmmelnnlklNKELLRKDLKPAIEFREK--KKC 266 query 176 DwVSLGGGIH----ftgDDYP-VDAFSARLRAFSdrygvqIYLEPGE-----ASITKstt 225 : :::::::: :::: :::::::::::: ::::::: ::::: d1ceoa_ 267 K-LYCGEFGViaiadleSRIKwHEDYISLLEEYD------IGGAVWNykkmdFEIYN--- 316 query 226 levtvldtlynknlaivdssieahmldlliyretakvlpnegshsymicgksclagdvfg 285 d1ceoa_ 317 ------------------------------------------------------------ 317 query 286 efrfaeelkvgdrisfqdaagytmvkknwfngvkmpaiaireldgsvrtvreftyadyeq 345 d1ceoa_ 317 -----------------------------------------------edrkpvsqelvni 329 query 346 sls 348 d1ceoa_ 330 lar 332 FAST alignment (Normalized score: 3.69 Raw score:1256.00) query 1 MIETPYYLIDKAKLTRNMERIAHVREKSGA----KALLALKC------------------ 38 ::::: d1ceoa_ 1 ------------------------------MVSFKAGIN---LGGWISQYQVFSKEHFDT 27 query 39 FATWSVFDLMRD-YMDGTTSS-------------------SLFEVRLGRERF----GKET 74 :::::::::::: ::::::: ::::::::::: :::: d1ceoa_ 28 FITEKDIETIAEAGFDHVRL-PFDYPIIESDDNVGEYKEDGLSYIDRCLEW-CKKYNLGL 85 query 75 HAYSVAY---------------GDNEIDEVVSHA--------DKIIFN------------ 99 :::::: :::::::::: :::: d1ceoa_ 86 VLDMHH-APGSTLFEDPNQQKRFVDIWRFLAK--RYINEREHIAFE--LLNQVVEPDSTR 140 query 100 ----SISQLERFADKAAGIARGLRLNPQRLGEWDVPKVERVMDR---------------- 139 ::::::::::::::::::::: d1ceoa_ 141 WNKLMLECIKAIREIDSTMWLYIGG-------------------NNYNSPDELKNLADID 181 query 140 --INGFMIHNNCEN---------------------------------------------- 151 ::::::: d1ceoa_ 182 DDYIVYNFH-----FYNPFFFTHQKAHWSESAMAYNRTVKYPGQYEGIEEFVKNNPKYSF 236 query 152 --------KDFGLFDRMLGEIEERFGALIARV--DWVSLGGGIHFTGDD-------YPVD 194 ::::::::::::::::::: :::::: :::: d1ceoa_ 237 MMELNNLKLNKELLRKDLKPAIEFREK-----KKCKLYCG---------EFGVIAIADLE 282 query 195 AFSARLRAFS---DRYGVQIYLEPGEASITKSTTLEVTVLDTLYNKNLAIVDSSIEAHML 251 :::::::::: ::::::::::: d1ceoa_ 283 SRIKWHEDYISLLEEYDIGGAVWN------------------------------------ 306 query 252 DLLIYRETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVK 311 d1ceoa_ 307 ------------------------------------------------------------ 307 query 312 KNWFNGVKMPAIAIRELDGSVRTVREFTYADYEQSLS----------------------- 348 d1ceoa_ 307 -------------------------------------YKKMDFEIYNEDRKPVSQELVNI 329 query 349 --- 349 d1ceoa_ 330 LAR 332 TMalign alignment (TM-score: 0.35 Raw score:121.31) query 1 --MIETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSS 58 : :::::: d1ceoa_ 1 MV--------------------------------S-------------------FKAGIN 9 query 59 S----------------LFEVRLGRERFGKETHAYSVAYGDNEIDEVV-SHADKIIFN-- 99 : ::::::::::::: ::::::::: d1ceoa_ 10 LGGWISQYQVFSKEHFD------------------TFITEKDIETIAEAGFDHVRLPFDY 51 query 100 SISQLERFADKAAGIARGLRLNPQ-----RLGEWDVPKVE-RVMD-RI--N-----GFMI 145 ::::: :::::::: ::: :: : :::: d1ceoa_ 52 -------------------PIIESDDNVG---EYKEDGLSY-IDRCLEWCKKYNLGLVLD 88 query 146 HNNC-ENKDFGLFDRMLGEIEERFGALIARVD-----WVSLGGGIHFTGDDYP-VDAFSA 198 :::: :::::::::::::::::::::::::: :::::::::: ::::: :::::: d1ceoa_ 89 MHHAP-GSTLFEDPNQQKRFVDIWRFLAKRYINEREHIAFELLNQVV-EPDSTRWNKLML 146 query 199 RLRAFSDRYGV-QIYLEPG--EASITK-----------------STTLEVTVLDTLYNKN 238 ::::::::::: ::::::: :::::: ::::: d1ceoa_ 147 ECIKAIREIDSTMWLYIGGNNYNSPDELKNLADIDDDYIVYNFHFYNPF----------- 195 query 239 LAIVDSSIEAHMLDLLIYRETAKVLPNEGSHSYMICGKS-----------CLAGDVF--G 285 : :::: ::::::::: :::::: :: : d1ceoa_ 196 -------F-FTHQ-KAHWSESAM----------AYNRTVKYPGQYEGIEE-----FVKNN 231 query 286 -EFRFAEEL-KVGDRISF---QD--AA----------------GYTMVKKNWFNGVKMPA 322 :::::: : ::::: :: :: :::::::::: :::::: d1ceoa_ 232 PKYSFMM-EL---NNLKLNKELLRKDLKPAIEFREKKKCKLYCGEFGVIAIAD-LESRIK 286 query 323 I--AI--RE----------------------------LDGSVRTVREFTYADY-EQS--- 346 : :: : : :: d1ceoa_ 287 WHEDYIS-LLEEYDIGGAVWNYKKMDFEIYNEDRKPV---------------SQ-ELVNI 329 query 347 ---LS 348 d1ceoa_ 330 LAR-- 332 HHsearch alignment (Probability: 0.02 E-value:0.54) query 149 CENKDFGLFDRMLGEIEERFGALIARVDWVSL-GGGIHFTGDDYPVDAFSARLRAFSDR 206 :::::::::::::::::::::::::::::::: ::::::::::: ::::::::::::: d1ceoa_ 276 IAIADLESRIKWHEDYISLLEEYDIGGAVWNYKKMDFEIYNEDR--KPVSQELVNILAR 332
Intermediate <-- 0.805 --> HitDALI alignment (Z-score: 6.5 Raw score:744.50) d1ceoa_ 1 mvsfKAGINLGGWisqyqvfskehfdtfITEKDIETIAE--AGFDHVRLPFDYPIiesdd 58 ::::::::: ::::::::::: :::::::::::::: d1sfsa_ 1 ---gIWGVDSAQV---------------VTDQLFQCVRTelGYPKFWGRYLSEVP----- 37 d1ceoa_ 59 nvgeykedglsyIDRCLEWCKKYNLGLVLDMHHAPgstlfedpNQQKRFVDIWRFLAKRY 118 ::::::::::::::::::::::: ::::::::::::::::: d1sfsa_ 38 ------nvseglTRDEIVRIRNYGVKVLPIYNAFR---eavgyANGQVAARNAVFHARRL 88 d1ceoa_ 119 INErehiAFELLNQVVEPDSTRWNKLMLECIKAIReidstMWLYIGgnnyNSPD---ELK 175 ::: :::::::::::::::::::::::::::: :::::: :::: ::: d1sfsa_ 89 GIP-knkLLFANIEDFFAVDAAWIAAWVETLYPTG-----YRPGLY----ADPTkgdFAA 138 d1ceoa_ 176 NL-------aDIDDdYIVYNFHFYNPfffthqkahwsesamaynrtvkypgqyegieefv 228 :: :::: ::::::::::: d1sfsa_ 139 AYceavsrnnQVAV-QAVIWSAAPRP---------------------------------- 163 d1ceoa_ 229 knnpkysfmmelnnlklnkellrkdlkpAIEFRekkkCKLYCGEFGviaiadlesrikwh 288 ::::: ::::::::: d1sfsa_ 164 --------------gttkeqkapryqpaAPPCS----ANVWVWQYG-------------- 191 d1ceoa_ 289 edyislleeydiggavwnykkmdFEIYnedrkpvsqelvnilar 332 :::: d1sfsa_ 192 ----------------------rDAEVcpvdtnladrrlldfly 213 FAST alignment (Normalized score: 4.81 Raw score:1279.00) d1ceoa_ 1 MVSF-KAGINLGGWISQYQVFSKEHFDT-FITEKDIETIAE--AGFDHVRLPFDYPIIES 56 ::::::: :::::::::::: ::::::::: d1sfsa_ 1 ----GIWGVDSA----------------QVVTDQLFQCVRTELGYPKFWGRY-------- 32 d1ceoa_ 57 DDNVGEYKEDGLSY-----------IDRCLEWCKKYNLGLVLDMHHAPGSTLFEDPNQQK 105 :::::::::::::::::::: :::: :::::::: d1sfsa_ 33 --------------LSEVPNVSEGLTRDEIVRIRNYGVKVLPIYN--AFRE-AVGYANGQ 75 d1ceoa_ 106 RFVDIWRFLAKRYINEREH------IAFELLNQVVEPDSTR---------WNKLMLECIK 150 :::::::::::: :::: :::::::::: d1sfsa_ 76 VAARNAVFHARR-------LGIPKNKLLF------------ANIEDFFAVDAAWIAAWVE 116 d1ceoa_ 151 AIREIDSTMWLYIGGNNYN-------SPDELKNLADID---------DDYIVYNFHFYNP 194 :::: :::::::: :::::: ::::::::: d1sfsa_ 117 TLYP--TGYRPGLY-----ADPTKGDFAAAYC------EAVSRNNQVAVQAVIWSA---- 159 d1ceoa_ 195 FFFTHQKAHWSESAMAYNRTVKYPGQYEGIEEFVKNNPKYSFMMELNNLKLNKELLRKDL 254 d1sfsa_ 160 ------------------------------------------------------------ 160 d1ceoa_ 255 KPAIEFRE--------------------KKKCKLYCGEFGVIAIADLESRIKWHEDYISL 294 :::::: d1sfsa_ 160 --------APRPGTTKEQKAPRYQPAAPPCSANV-------------------------- 185 d1ceoa_ 295 LEEYDIGG----AVWNYKKMDFEIYNEDRKPVSQELVNILAR------------------ 332 :::: d1sfsa_ 186 --------WVWQYGRD--------------------------AEVCPVDTNLADRRLLDF 211 d1ceoa_ 333 -- 333 d1sfsa_ 212 LY 213 TMalign alignment (TM-score: 0.43 Raw score:141.90) d1ceoa_ 1 MVSFKAGINLGGWISQYQVFSKEHFDTFITEKDIETIAE--AGFDHVRLPFDYPI---IE 55 :::::::: : :::::::::::: :::::::::::::: d1sfsa_ 1 ---GIWGVDSA-Q--------------VVTDQLFQCVRTELGYPKFWGRYLSEVPNVS-- 40 d1ceoa_ 56 SDDNVGEYKEDGLSYIDRCLEWCKKYNLGLVLDMHHAPGSTLFEDPNQQKRFVDIWRFLA 115 :: ::::::::::::::::::::::: :: ::::: ::::::::::::: d1sfsa_ 41 -----------EG-LTRDEIVRIRNYGVKVLPIYNAF-RE-AVGYA-NGQVAARNAVFHA 85 d1ceoa_ 116 KRYINEREHIAFELLNQVVEPDSTRWNKLMLECIKAIREIDSTMWLYIGGNNYNSPD--E 173 :::::::: :::::::::::: : : ::::::::::::::: ::::::: :::: : d1sfsa_ 86 RRLGIPKN-KLLFANIEDFFA-V-D-AAWIAAWVETLYPTG--YRPGLYA---DPTKGDF 136 d1ceoa_ 174 LKNL--AD---IDD-DYIVYNFHFYNPFFFT-------HQKAHWSESAMAYNRTVKYPGQ 220 :::: :: ::: :::::::::::: : d1sfsa_ 137 AAAYCEAVSRNNQVAVQAVIWSAAPRP---GTTKEQKA---------------------- 171 d1ceoa_ 221 YEGIEEFVKNNPKYSFMMELNNLKLNKELLR-KDLKPAIEFREKKKCKLYCGEFGVIAIA 279 :: :::: :: :::::::: ::: d1sfsa_ 172 -----------------------------PRY--QPAA-PP--CSANVWVW-QYG----- 191 d1ceoa_ 280 DLESRIKWHEDYISLLEEYDIGGAVWNYKKMDFEIYN--EDRKPVSQELV-NILA----- 331 :: ::::: : :: d1sfsa_ 192 -------------------------RD-----AEVCPVD----------TN--LADRRLL 209 d1ceoa_ 332 ----R 332 d1sfsa_ 210 DFLY- 213 HHsearch alignment (Probability: 0.15 E-value:0.04) d1ceoa_ 27 TFITEKDIETIAEA-GFDHVRLPFDYPIIESDD--NVGEYKEDGLSYIDRCLEWCKKYNL 83 :::::::::::::: ::::: :::::::: ::::::: ::::::::::: d1sfsa_ 9 QVVTDQLFQCVRTELGYPKF-----WGRYLSEVPNVSEGLTR-------DEIVRIRNYGV 56 d1ceoa_ 84 GLVLDMHHAPGSTLFEDPNQQKRFVDIWRFLAKRYINEREHIAFELLNQVVEPDSTRWNK 143 ::::::::::::::::::::: :::::::::::::::::::: ::::::::::::::: d1sfsa_ 57 KVLPIYNAFREAVGYANGQVA---ARNAVFHARRLGIPKNKLLF-ANIEDFFAVDAAWIA 112 d1ceoa_ 144 L 144 : d1sfsa_ 113 A 113