Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T515_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1ceoa_ | Endoglucanase CelC | (Trans)glycosidases | TIM beta/alpha-barrel | α/β |
| Hit | d1dysa_ | Cellobiohydrolase II (Cel6) | Cellulases | 7-stranded beta/alpha barrel | α/β |
Query <-- 0.976 --> IntermediateDALI alignment (Z-score: 8.4 Raw score:929.10) query 1 mietpyylidkakltrnmeriahvreksgaKALLALKCF---------------ATWSVF 45 ::::::::: :::::: d1ceoa_ 1 --------------------------mvsfKAGINLGGWisqyqvfskehfdtfITEKDI 34 query 46 DLMRD-YMDGTTSSS------------------lFEVRLGRERFG---KETHAYSV---- 79 ::::: ::::::::: ::::::::::: :::::::: d1ceoa_ 35 ETIAEaGFDHVRLPFdypiiesddnvgeykedglSYIDRCLEWCKkynLGLVLDMHhapg 94 query 80 ---------------AYGDnEIDEVVSH--aDKIIFN--------------SISQLERFA 108 :::: :::::::: :::::: ::::::::: d1ceoa_ 95 stlfedpnqqkrfvdIWRF-LAKRYINErehIAFELLnqvvepdstrwnklMLECIKAIR 153 query 109 DKAAGIARGLR----LNPQrlgEWDVpkVERVMDRINGFMIHNN---------------- 148 ::::::::::: :::: :::: :::::::::::::::: d1ceoa_ 154 EIDSTMWLYIGgnnyNSPD---ELKN--LADIDDDYIVYNFHFYnpfffthqkahwsesa 208 query 149 ---------------------------------cenkDFGLFDRMLGEIEERFGAliARV 175 :::::::::::::::::: ::: d1ceoa_ 209 maynrtvkypgqyegieefvknnpkysfmmelnnlklNKELLRKDLKPAIEFREK--KKC 266 query 176 DwVSLGGGIH----ftgDDYP-VDAFSARLRAFSdrygvqIYLEPGE-----ASITKstt 225 : :::::::: :::: :::::::::::: ::::::: ::::: d1ceoa_ 267 K-LYCGEFGViaiadleSRIKwHEDYISLLEEYD------IGGAVWNykkmdFEIYN--- 316 query 226 levtvldtlynknlaivdssieahmldlliyretakvlpnegshsymicgksclagdvfg 285 d1ceoa_ 317 ------------------------------------------------------------ 317 query 286 efrfaeelkvgdrisfqdaagytmvkknwfngvkmpaiaireldgsvrtvreftyadyeq 345 d1ceoa_ 317 -----------------------------------------------edrkpvsqelvni 329 query 346 sls 348 d1ceoa_ 330 lar 332 FAST alignment (Normalized score: 3.69 Raw score:1256.00) query 1 MIETPYYLIDKAKLTRNMERIAHVREKSGA----KALLALKC------------------ 38 ::::: d1ceoa_ 1 ------------------------------MVSFKAGIN---LGGWISQYQVFSKEHFDT 27 query 39 FATWSVFDLMRD-YMDGTTSS-------------------SLFEVRLGRERF----GKET 74 :::::::::::: ::::::: ::::::::::: :::: d1ceoa_ 28 FITEKDIETIAEAGFDHVRL-PFDYPIIESDDNVGEYKEDGLSYIDRCLEW-CKKYNLGL 85 query 75 HAYSVAY---------------GDNEIDEVVSHA--------DKIIFN------------ 99 :::::: :::::::::: :::: d1ceoa_ 86 VLDMHH-APGSTLFEDPNQQKRFVDIWRFLAK--RYINEREHIAFE--LLNQVVEPDSTR 140 query 100 ----SISQLERFADKAAGIARGLRLNPQRLGEWDVPKVERVMDR---------------- 139 ::::::::::::::::::::: d1ceoa_ 141 WNKLMLECIKAIREIDSTMWLYIGG-------------------NNYNSPDELKNLADID 181 query 140 --INGFMIHNNCEN---------------------------------------------- 151 ::::::: d1ceoa_ 182 DDYIVYNFH-----FYNPFFFTHQKAHWSESAMAYNRTVKYPGQYEGIEEFVKNNPKYSF 236 query 152 --------KDFGLFDRMLGEIEERFGALIARV--DWVSLGGGIHFTGDD-------YPVD 194 ::::::::::::::::::: :::::: :::: d1ceoa_ 237 MMELNNLKLNKELLRKDLKPAIEFREK-----KKCKLYCG---------EFGVIAIADLE 282 query 195 AFSARLRAFS---DRYGVQIYLEPGEASITKSTTLEVTVLDTLYNKNLAIVDSSIEAHML 251 :::::::::: ::::::::::: d1ceoa_ 283 SRIKWHEDYISLLEEYDIGGAVWN------------------------------------ 306 query 252 DLLIYRETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVK 311 d1ceoa_ 307 ------------------------------------------------------------ 307 query 312 KNWFNGVKMPAIAIRELDGSVRTVREFTYADYEQSLS----------------------- 348 d1ceoa_ 307 -------------------------------------YKKMDFEIYNEDRKPVSQELVNI 329 query 349 --- 349 d1ceoa_ 330 LAR 332 TMalign alignment (TM-score: 0.35 Raw score:121.31) query 1 --MIETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSS 58 : :::::: d1ceoa_ 1 MV--------------------------------S-------------------FKAGIN 9 query 59 S----------------LFEVRLGRERFGKETHAYSVAYGDNEIDEVV-SHADKIIFN-- 99 : ::::::::::::: ::::::::: d1ceoa_ 10 LGGWISQYQVFSKEHFD------------------TFITEKDIETIAEAGFDHVRLPFDY 51 query 100 SISQLERFADKAAGIARGLRLNPQ-----RLGEWDVPKVE-RVMD-RI--N-----GFMI 145 ::::: :::::::: ::: :: : :::: d1ceoa_ 52 -------------------PIIESDDNVG---EYKEDGLSY-IDRCLEWCKKYNLGLVLD 88 query 146 HNNC-ENKDFGLFDRMLGEIEERFGALIARVD-----WVSLGGGIHFTGDDYP-VDAFSA 198 :::: :::::::::::::::::::::::::: :::::::::: ::::: :::::: d1ceoa_ 89 MHHAP-GSTLFEDPNQQKRFVDIWRFLAKRYINEREHIAFELLNQVV-EPDSTRWNKLML 146 query 199 RLRAFSDRYGV-QIYLEPG--EASITK-----------------STTLEVTVLDTLYNKN 238 ::::::::::: ::::::: :::::: ::::: d1ceoa_ 147 ECIKAIREIDSTMWLYIGGNNYNSPDELKNLADIDDDYIVYNFHFYNPF----------- 195 query 239 LAIVDSSIEAHMLDLLIYRETAKVLPNEGSHSYMICGKS-----------CLAGDVF--G 285 : :::: ::::::::: :::::: :: : d1ceoa_ 196 -------F-FTHQ-KAHWSESAM----------AYNRTVKYPGQYEGIEE-----FVKNN 231 query 286 -EFRFAEEL-KVGDRISF---QD--AA----------------GYTMVKKNWFNGVKMPA 322 :::::: : ::::: :: :: :::::::::: :::::: d1ceoa_ 232 PKYSFMM-EL---NNLKLNKELLRKDLKPAIEFREKKKCKLYCGEFGVIAIAD-LESRIK 286 query 323 I--AI--RE----------------------------LDGSVRTVREFTYADY-EQS--- 346 : :: : : :: d1ceoa_ 287 WHEDYIS-LLEEYDIGGAVWNYKKMDFEIYNEDRKPV---------------SQ-ELVNI 329 query 347 ---LS 348 d1ceoa_ 330 LAR-- 332 HHsearch alignment (Probability: 0.02 E-value:0.54) query 149 CENKDFGLFDRMLGEIEERFGALIARVDWVSL-GGGIHFTGDDYPVDAFSARLRAFSDR 206 :::::::::::::::::::::::::::::::: ::::::::::: ::::::::::::: d1ceoa_ 276 IAIADLESRIKWHEDYISLLEEYDIGGAVWNYKKMDFEIYNEDR--KPVSQELVNILAR 332
Intermediate <-- 0.933 --> HitDALI alignment (Z-score: 8.5 Raw score:1113.00) d1ceoa_ 1 -----MVSFKaginlggwisqyqvfskehfdTFIT----------------ekdieTIAE 39 ::::: :::: :::: d1dysa_ 1 gnpfsGRTLL------------------vnsDYSSkldqtrqaflsrgdqtnaakvKYVQ 42 d1ceoa_ 40 AGFdHVRLPFDYPIIesddnvgeykeDGLSYIDRCLEWCKK--YNLGLVLDMHHA----- 92 ::: ::::::::::: ::::::::::::::: :::::::::::: d1dysa_ 43 EKV-GTFYWISNIFL----------lRDIDVAIQNARAAKArgENPIVGLVLYNLpdrdc 91 d1ceoa_ 93 -------PGSTlfEDPNQQKR-FVDIWRFLAKRYINEreHIAFELLNQV--VEPD----- 137 :::: :::::::: ::::::::::::::: :::::::::: :::: d1dysa_ 92 sagessgELKLsqNGLNRYKNeYVNPFAQKLKAASDV--QFAVILEPDAigNMVTgtsaf 149 d1ceoa_ 138 ----STRWNKLMLECIKAIReiDSTMWLYIGgnnyNSPD-----------ELKNL-ADID 181 :::::::::::::::: ::::::::: :::: ::::: :::: d1dysa_ 150 crnaRGPQQEAIGYAISQLQ--ASHIHLYLD----VANGgwlgwadklepTAQEVaTILQ 203 d1ceoa_ 182 -----DDYIVYNFH--FYNPfffthqkahwsesamaynrtvkypgqyegieefvknnpky 234 ::::::::: :::: d1dysa_ 204 kagnnAKIRGFSSNvsNYNP---------------------------------------- 223 d1ceoa_ 235 sfmmelnnlklNKEL-------lRKDL-KPAIEFREKKK-----CKLYCgEFGV------ 275 :::: :::: ::::::::::: ::::: :::: d1dysa_ 224 ---------ysTSNPppytsgspSPDEsRYATNIANAMRqrglpTQFII-DQSRvalsga 273 d1ceoa_ 276 --------IAIAdlesrikwhedyislLEEYD--IGGAV-WNYKKMD------------f 312 :::: ::::: ::::: ::::::: d1dysa_ 274 rsewgqwcNVNP------agfgqpfttNTNNPnvDAIVWvKPGGESDgqcgmggapaagm 327 d1ceoa_ 313 eiynedrkPVSQeLVNIlar 332 :::: :::: d1dysa_ 328 wfdayaqmLTQN-AHDE-ia 345 FAST alignment (Normalized score: 3.14 Raw score:1062.00) d1ceoa_ 1 MVSFK--------------------------------------------AGINLGGWISQ 16 ::::: d1dysa_ 1 -----GNPFSGRTLLVNSDYSSKLDQTRQAFLSRGDQTNAAKVKYVQEKVGTFY------ 49 d1ceoa_ 17 YQV--FSKEHFDTFITEKDIETIAEAGF-------DHVRLPFDYPIIESDDNVGEY---- 63 ::::: ::: :::::::::: ::::::: d1dysa_ 50 ---WISNIFL-LRD-IDVAIQNARA---AKARGENPIVGLVL--------------YNLP 87 d1ceoa_ 64 -------------------KEDGL-SYIDRCLEWCKKY--NLGLVLDMHHAPGSTLFE-- 99 ::::: :::::::::::: :::::: d1dysa_ 88 DRDCSAGESSGELKLSQNGLNRYKNEYVNPFAQKLKA-ASDVQFAV------------IL 134 d1ceoa_ 100 ---------------DPNQQKRFVDIWRFLAKRYINE-REHIAFELLNQVVEP------- 136 ::::::::::::::::::: ::::::: d1dysa_ 135 EPDAIGNMVTGTSAFCRNARGPQQEAIGYAISQL---QASHIHLY--------LDVANGG 183 d1ceoa_ 137 ------DSTRWNKLMLECIKAIREI-DSTMWLYIGGNNYNSPDELKNLADIDDDYIVYNF 189 ::::::::::::::: ::::::: d1dysa_ 184 WLGWADKLEPTAQEVATILQK----AGNNAKIR--------------------------- 212 d1ceoa_ 190 HFYNPFFFTHQKAHWSESAMAYNRTVKYPGQYEGIEEFVKNNPKYSFMMELNNLKLNKE- 248 d1dysa_ 213 -----------------------------------------------------------G 213 d1ceoa_ 249 --------------------------LLRKDLKPAIEFREKKK--CKLYCGEFGVIAIAD 280 ::::::::::::::::: :::: d1dysa_ 214 FSSNVSNYNPYSTSNPPPYTSGSPSPDESRYATNIANAMRQRGLPTQFI----------- 262 d1ceoa_ 281 LESRIKWHEDYISLL---------------------------------EEYDI---GGAV 304 :::: :::: d1dysa_ 263 ---------------IDQSRVALSGARSEWGQWCNVNPAGFGQPFTTNTNNP-NVDAIVW 306 d1ceoa_ 305 WNYKKMDFEIYNEDRKPVSQELVNILAR-------------------------------- 332 : d1dysa_ 307 V---------------------------KPGGESDGQCGMGGAPAAGMWFDAYAQMLTQN 339 d1ceoa_ 333 ------ 333 d1dysa_ 340 AHDEIA 345 TMalign alignment (TM-score: 0.54 Raw score:180.85) d1ceoa_ 1 MVSFK-AGINLGGWISQYQVFSKEHFDTFIT----------------EKD-IETIAEAGF 42 ::::: ::::::::: ::::: : :::::: : d1dysa_ 1 GNPFSGRTLLVNSDY-----------SSKLDQTRQAFLSRGDQTNAA--KV-KYVQEK-V 45 d1ceoa_ 43 DHVRLPFDYPIIESDDNVGEYKEDGLSYIDRCLEWCKK--YNLGLVLDMHHAPG------ 94 :::::::::::: : :::::::::::::: :::::::::::::: d1dysa_ 46 -GTFYWISNIFLL---------R-DIDVAIQNARAAKARGENPIVGLVLYNLPDRDCSAG 94 d1ceoa_ 95 ST---LFEDPNQQKRFVD-IWRFLAKRYINER-EHIAFELLNQV--VE--P-----D--S 138 :: ::::::::::::: ::::::::::::: ::::::::::: :: : : : d1dysa_ 95 ESSGELKLSQNGLNRYKNEYVNPFAQKLKAASDVQFAVILEPDAIGNMVTGTSAFCRNAR 154 d1ceoa_ 139 TRWNKLMLECIKAIREIDSTMWLYIGGNNY-NSP----D--ELKNL-A-DI---DDDYIV 186 ::::::::::::::: ::::::::::::: ::: : ::::: : :: :::::: d1dysa_ 155 GPQQEAIGYAISQLQ--ASHIHLYLDVANGGWLGWADKLEPTAQEVATILQKAGNNAKIR 212 d1ceoa_ 187 YNFHFYNPFFFTH--QKAHWSESAMAYNRTVKYPGQYEGIEEFVKNNPKYSFMMELNNLK 244 ::::::: : ::: :::::: : :: d1dysa_ 213 GFSSNVS-N-YNPYS----------------TSNPPP------------------Y--TS 234 d1ceoa_ 245 LNKELL-RKDLKPAIEFREK-KKCKLYCGEF-GVIA-------------IADLESRIKWH 288 :::::: ::::::::::::: :::::::::: :::: :::: :: : d1dysa_ 235 GSPSPDESRYATNIANAMRQRGLPTQFIIDQSRVALSGARSEWGQWCNVNPAG--FG--Q 290 d1ceoa_ 289 E-DYISLLEEYDIG-GAVWNYKKMDF---------------E-IYNE-DRKPVSQELVNI 329 : :::::::::: ::::::::::: : ::: :::::::::: d1dysa_ 291 PF--TTNTNNPNVDAIVWVKPGGESDGQCGMGGAPAAGMWFDA-YAQM-LTQNAHDEIA- 345 d1ceoa_ 330 LAR 332 d1dysa_ 346 --- 346 HHsearch alignment (Probability: 0.56 E-value:0.05) d1ceoa_ 77 WCKKYNLGLV--LDMHHAPGSTLFE---------DPN----QQKRFVDIWRFLAKRYINE 121 :::::::::: ::::::::::::: ::: ::::::::::::::::::: d1dysa_ 69 AAKARGENPIVGLVLYNLPDRDCSAGESSGELKLSQNGLNRYKNEYVNPFAQKLKAASDV 128 d1ceoa_ 122 REHIAFELLNQVVE---------PDSTRWNKLMLECIKAIREIDSTMWLYIGGNNYNSPD 172 :::::::::::::: ::::::::::::::::::::::::::::::::::::: d1dysa_ 129 QFAVILEPDAIGNMVTGTSAFCRNARGPQQEAIGYAISQLQASHIHLYLDVANGGWLGWA 188 d1ceoa_ 173 E 173 : d1dysa_ 189 D 189