Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T515_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1q7za2 | Cobalamin-dependent methionine synthase MetH, N-terminal domain | Homocysteine S-methyltransferase | TIM beta/alpha-barrel | α/β |
| Hit | d1tmla_ | Cellulase E2 | Cellulases | 7-stranded beta/alpha barrel | α/β |
Query <-- 1.075 --> IntermediateDALI alignment (Z-score: 8.8 Raw score:947.40) query 1 mietpyylidkakltrnmeriahvreksGAKALLAlKCFA-------------------- 40 ::::::: :::: d1q7za2 1 ---------------mrnrrevskllseRVLLLDGaYGTEfmkygyddlpeelnikapdv 45 query 41 TWSVFDLMRD-YMDGTTSSS---------------------LFEVRLGRERFG-KETHAY 77 :::::::::: ::::::::: :::::::::::: :::::: d1q7za2 46 VLKVHRSYIEsGSDVILTNTfgatrmklrkhgledkldpivRNAVRIARRAAGeKLVFGD 105 query 78 SV-------------------AYGDnEIDEVVS-HADKIIFN-------SISQLERFADK 110 :: :::: ::::::: :::::::: ::::::::::: d1q7za2 106 IGptgelpyplgstlfeefyeNFRE-TVEIMVEeGVDGIIFEtfsdileLKAAVLAAREV 164 query 111 AAGIARGLRLNPQ--------rlgeWDVPKVERVmdRINGFMIHNNcenkdfglFDRMLG 162 ::::::::::::: ::::::::: :::::::::: :::::: d1q7za2 165 SRDVFLIAHMTFDekgrsltgtdpaNFAITFDEL--DIDALGINCS------lgPEEILP 216 query 163 EIEeRFGALiARVDwVSLGGGI-------------HFTGddYPVDaFSARLRAFSdrygv 209 ::: ::::: :::: ::::::: :::: :::: ::::::::: d1q7za2 217 IFQ-ELSQY-TDKF-LVVEPNAgkpivengktvypLKPH--DFAV-HIDSYYELG----- 265 query 210 QIYLEP-gEASITksttlevtvldtlynknlaivdssieahmldlliyretakvlpnegs 268 :::::: ::::: d1q7za2 266 VNIFGGccGTTPE----------------------------------------------- 278 query 269 hsymicgksclagdvfgefrfaeelkvgdrisfqdaagytmvkknwfngvkmpaiairel 328 d1q7za2 279 ----------------------------------------------------------hv 280 query 329 dgsvrtvreftyadyeqsls 348 d1q7za2 281 klfrkvlgnrkplqrkkkri 300 FAST alignment (Normalized score: 4.75 Raw score:1537.00) query 1 MIETPYYLIDKAKLTRNMERIAHVREKS-------------GAKA-LLALKCFA------ 40 :::: :::::: d1q7za2 1 ----------------------------MRNRREVSKLLSERVLLLDGAYGT--EFMKYG 30 query 41 ---------------TWSVFDLMRD-YMDGTTSS-----------------------SLF 61 :::::::::: :::::: ::: d1q7za2 31 YDDLPEELNIKAPDVVLKVHRSYIESGSDVIL--TNTFGATRMKLRKHGLEDKLDPIVRN 88 query 62 EVRLGRERFG-KETHAYSVAY---------------------GDNEIDEVVS-HADKIIF 98 :::::::::: ::::::: :::::::::: :::::: d1q7za2 89 AVRIARRAAGEKLVFGDI---GPTGELPYPLGSTLFEEFYENFRETVEIMVEEGVDGII- 144 query 99 N---------SISQLERFADKAAGIARGLRLNPQRLGEW---------------DVPKVE 134 :::::::::::::::::::::: :::::: d1q7za2 145 -FETFSDILELKAAVLAAREVSRDVFLIAHMT-------FDEKGRSLTGTDPANFAITFD 196 query 135 RVMDRINGFMIHNNCENKDFGLFDRMLGEIEERFGALIARV--DWVSLGGGIHFTGDDYP 192 : :::::::: :::: ::::::::::::::: ::::::: d1q7za2 197 E--LDIDALGI--NCSL-GPEEILPIFQELSQY--------TDKFLVVEP---------- 233 query 193 --------------------VDAFSARLRAFSDRYGVQ---IYLEPGEASITKSTTLEVT 229 :::::::::: :::::::: d1q7za2 234 NAGKPIVENGKTVYPLKPHDFAVHIDSYYE--------LGVNIFGGCCG----------- 274 query 230 VLDTLYNKNLAIVDSSIEAHMLDLLIYRETAKVLPNEGSHSYMICGKSCLAGDVFGEFRF 289 d1q7za2 275 ------------------------------------------------------------ 275 query 290 AEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVREFTYADYEQSLS- 348 d1q7za2 275 -----------------------------------------------------------T 275 query 349 ------------------------- 349 d1q7za2 276 TPEHVKLFRKVLGNRKPLQRKKKRI 300 TMalign alignment (TM-score: 0.30 Raw score:104.26) query 1 ---MIETPYYLIDKAKLTRNMERIAHVREKSG-AK---ALLALKCFATWSVFDLMRDYMD 53 :: : : d1q7za2 1 MRN---------------------------RRE-VSKL---------------------L 11 query 54 ---GTTSSSLFEVRLGRERFGKETHAYS-VAYG------------------DNEIDEVVS 91 ::::::: :::: d1q7za2 12 SER------------------VLLLDGAYGTEFMKYGYDDLPEELNIKAPD--------- 44 query 92 HADKIIFNSISQLERFADKAAGIARGLRL-NP----Q--R-----LG-EWDVPKVERVMD 138 :::::::::::::: ::::::: :: : : : :::::::::::: d1q7za2 45 -------VVLKVHRSYIESGS-DVILTNTFGATRMKLRKHGLEDK-LDPIVRNAVRIARR 95 query 139 RI----NGFMIHNNCENK------DFGLFDRMLGEIEERFGALIARVDWVSLGGGIHFTG 188 :: :::::::::::: ::::::::::::::::::: ::::::::::::: d1q7za2 96 AAGEKLVFGDIGPTGELPYPLGSTLFEEFYENFRETVEIMVEE--GVDGIIFETFSDI-- 151 query 189 DDYPVDAFSARLRAFSDRYGVQIYLEPGEA--SIT--KST-------------------- 224 ::::::::::::::: ::::::::::: ::: ::: d1q7za2 152 --LELKAAVLAAREVSR--DVFLIAHMTFDEKGRSLTGTDPANFAITFDELDIDALGINC 207 query 225 --------------------------TLEVTVLDTLYNKNLAIVDSSIEAHMLDLLIYRE 258 d1q7za2 208 SLGPEEILPIFQELSQYTDKFLVVEP---------------------------------- 233 query 259 TAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGY-TMVKKN---- 313 : ::::: d1q7za2 234 ------------------------------------------------NA-GKPIVENGK 244 query 314 --------------------------------------------------------WFNG 317 d1q7za2 245 TVYPLKPHDFAVHIDSYYELGVNIFGGCCGTTPEHVKLFRKVLGNRKPLQRKKKRI---- 300 query 318 VKMPAIAIRELDGSVRTVREFTYADYEQSLS 348 d1q7za2 301 ------------------------------- 301 HHsearch alignment (Probability: 0.01 E-value:0.30) query 5 PYYLIDKAKLTRNMERIAHVREKSGAKALL 34 :::::::::::::::::::::::::::::: d1q7za2 115 PLGSTLFEEFYENFRETVEIMVEEGVDGII 144
Intermediate <-- 1.053 --> HitDALI alignment (Z-score: 9.9 Raw score:1129.10) d1q7za2 1 mrnrrevskllservllldgaYGTEFMKYGyddlpeelnikapdvvlkvhrsyieSGSDv 60 ::::::::: :::: d1tmla_ 1 -----------ndspfyvnpnMSSAEWVRN-----------npndprtpvirdriASVP- 37 d1q7za2 61 ILTNtFGATRmklrkhglEDKLDPIVRNAVRIARRAAgeKLVFGDIGPTGELPYPLGS-- 118 :::: ::::: ::::::::::::::::::: ::::::::::::::::::: d1tmla_ 38 QGTW-FAHHN--------PGQITGQVDALMSAAQAAG--KIPILVVYNAPGRDCGNHSsg 86 d1q7za2 119 --TLFEEFYENFRETVEIMVEeGVDGIIFETFSD--------------ILELKAAVLAAR 162 ::::::::::::::::::: :::::::::::: :::::::::::: d1tmla_ 87 gaPSHSAYRSWIDEFAAGLKN-RPAYIIVEPDLIslmsscmqhvqqevLETMAYAGKALK 145 d1q7za2 163 EVSRDVFLIAHMTFdEKGRsltgtDPANFAITFD----ELDIDALGI-NCSL-GPEEILP 216 :::::::::::::: :::: :::::::::: ::::::::: :::: ::::::: d1tmla_ 146 AGSSQARIYFDAGH-SAWH-----SPAQMASWLQqadiSNSAHGIATnTSNYrWTADEVA 199 d1q7za2 217 IFQELSQYT---DKFLVVEPNAG--KPIV--engkTVYPLkphdfavhidsYYELGVNIF 269 ::::::::: ::::::::::: :::: ::::: ::::::::: d1tmla_ 200 YAKAVLSAIgnpSLRAVIDTSRNgnGPAGnewcdpSGRAI----gtpsttnTGDPMIDAF 255 d1q7za2 270 GGCcgTTPEhvklfrkvlgnrkplqrkkkri 300 ::: :::: d1tmla_ 256 LWIklPGEAdgciagagqfvpqaayemaiaa 286 FAST alignment (Normalized score: 6.20 Raw score:1815.00) d1q7za2 1 MRNRREVSKLLSERVLLLDGA----------YGTEFMKYGYDDLPEELNIKAPDVVLKVH 50 ::::::: d1tmla_ 1 ---------------------NDSPFYVNPNMSSAEWV---------------------- 17 d1q7za2 51 RSYIESGS------------------DVILTNTFGATRMKLRKHG--LEDKLDPIVRNAV 90 :::::::: ::::::::::::: d1tmla_ 18 --------RNNPNDPRTPVIRDRIASVPQGTWFA-----------HHNPGQITGQVDALM 58 d1q7za2 91 RIARRAAGEKLVFGDIGPTGELPYPLGS----------------TLFEEFYENFRETVEI 134 ::::: ::::::::: :::::::::::::::: d1tmla_ 59 SAAQA--AGKIPILVV------------YNAPGRDCGNHSSGGAPSHSAYRSWIDEFAAG 104 d1q7za2 135 MVEEGV-----DGIIFETFS------------------DILELKAAVLAAREVSRDVFLI 171 ::::: :::::::::::::::::::::: d1tmla_ 105 ------LKNRPAYIIV----EPDLISLMSSCMQHVQQEVLETMAYAGKALKAGSSQARIY 154 d1q7za2 172 AHMTFDEKGRSLTGTDPANFAITFDEL----DIDALG-INC-SLGPEEILPIFQELSQYT 225 ::::::: :::::::::::::: :::::: ::: :::::::::::::::::: d1tmla_ 155 FDAGHSA------WHSPAQMASWLQQADISNSAHGIATNTSNYRWTADEVAYAKAVLSAI 208 d1q7za2 226 ---DKFLVVEPNAGKPIVENGKTVYPLKPHDFAVHIDSYYEL------------------ 264 ::::::::: d1tmla_ 209 GNPSLRAVIDTS------------------------------RNGNGPAGNEWCDPSGRA 238 d1q7za2 265 ------------GVNIFGGCCGTTPEHVKLFRKVLGNRKPLQRKKKRI------------ 300 :::::::: d1tmla_ 239 IGTPSTTNTGDPMIDAFLWI----------------------------KLPGEADGCIAG 270 d1q7za2 301 ---------------- 301 d1tmla_ 271 AGQFVPQAAYEMAIAA 286 TMalign alignment (TM-score: 0.52 Raw score:156.87) d1q7za2 1 -MRNRREVSKLLSERVLLLDGAYGTE-FMK------------------------YGYDDL 34 :::::::::::: :: :: d1tmla_ 1 N-------------DSPFYVNPNMSSA-EWVRNNPNDPRTPVIRDRIASVPQGT----WF 42 d1q7za2 35 PEELNIKAPDVVLKVHRSYIESGSDVILTNTFGATRMKL-R-K---H-GLEDKLDPIVRN 88 :::::::::::::::::::::::::::: ::::: :::: : : : :::::::::::: d1tmla_ 43 AHHNPGQITGQVDALMSAAQAAGKIPIL-VVYNA-PGRDCGNHSSGGAPSHSAYRSWIDE 100 d1q7za2 89 AVRIARRAAGEKLVFGDIG-PTGELPYPLGSTLFEE-FYENFRETVEIMVEEGV-DGIIF 145 :::::: : :::::::: ::::::: :::::::: ::::::::::::::::: ::::: d1tmla_ 101 FAAGLK---N-RPAYIIVEPDLISLMS-SCMQHVQQEVLETMAYAGKALKAGSSQARIYF 155 d1q7za2 146 ETFS---D-I-LELKAAVLAAREVSRDVFLIAHMTF-DEKGRSLTGTDPANFAITFDE-L 198 :::: : : :::::::::::::: : ::::::: ::::: :::::::::::: : d1tmla_ 156 DAGHSAWHSPAQMASWLQQADISNS--A-HGIATNTSNYRWT----ADEVAYAKAVLSAI 208 d1q7za2 199 -D-IDALGINCSLGP--------------EEILP-IF-QELSQYTDKFLVVEP-NAGKPI 239 : :::::::::::: ::::: : ::: ::::::::: :::::: d1tmla_ 209 GNPSLRAVIDTSRNGNGPAGNEWCDPSGRAIGTPS-TT--NTG-DPMIDAFLWIKLPGEA 264 d1q7za2 240 ---VENGKTVYP--LK--PHDF-AVHIDSYYELGVNIFGGCCGTTPEHVKLFRKVLGNRK 291 ::::::::: :: :: : d1tmla_ 265 DGCIAGAGQFVPQAAYEM--AIA--A---------------------------------- 286 d1q7za2 292 PLQRKKKRI 300 d1tmla_ 287 --------- 287 HHsearch alignment (Probability: 0.04 E-value:0.36) d1q7za2 71 MKLRKHGLEDKLDPIVRNAVRIARRA-AGEKLVFGDIGPTGEL-PYPLGSTLFEEFYENF 128 ::::::::: :::::::::::::::: :::::::::::::::: :::::::::::::::: d1tmla_ 40 TWFAHHNPG-QITGQVDALMSAAQAAGKIPILVVYNAPGRDCGNHSSGGAPSHSAYRSWI 98 d1q7za2 129 RETVEIMVEEGVDGIIFETFS--DI---------LELKAAVLAAREVS---RDVFLIAHM 174 :::::::: :::::::::::: :: :::::::::::::: :::: : d1tmla_ 99 DEFAAGLK-NRPAYIIVEPDLISLMSSCMQHVQQEVLETMAYAGKALKAGSSQAR----I 153 d1q7za2 175 TFDEKG-RSLTGTDPANFAITFDE-LDIDALGINCS 208 :::::: ::::::::::::::::: ::::::::::: d1tmla_ 154 YFDAGHSAWHSPAQMASWLQQADISNSAHGIATNTS 189