Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T515_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1b5ta_ | Methylenetetrahydrofolate reductase | FAD-linked oxidoreductase | TIM beta/alpha-barrel | α/β |
| Hit | d1tz9a_ | Mannonate dehydratase UxuA | Xylose isomerase-like | TIM beta/alpha-barrel | α/β |
Query <-- 1.178 --> IntermediateDALI alignment (Z-score: 9.2 Raw score:937.50) query 1 mietpyylidkakltrnmeriahvreksGAKALLALK-------cfaTWSVFDLMRDYMD 53 ::::::::: ::::::::::::: d1b5ta_ 1 ---------------------------gQINVSFEFFpprtsemeqtLWNSIDRLSSLKP 33 query 54 -GTTSSS----------LFEVRLGRERFGKETHAYSVA------yGDNEIDEVV-SHADK 95 :::::: ::::::::::::::::::::: ::::::::: ::::: d1b5ta_ 34 kFVSVTYgansgerdrtHSIIKGIKDRTGLEAAPHLTCidatpdeLRTIARDYWnNGIRH 93 query 96 IIFN--------------SISQLERFADKAAgIARGLRLNPQ-----rlgewDVPKVERV 136 :::: ::::::::::::: :::::::::: :::::::: d1b5ta_ 94 IVALrgdlppgsgkpemyASDLVTLLKEVAD-FDISVAAYPEvhpeaksaqaDLLNLKRK 152 query 137 MD-RINGFMIHNNcenkdfgLFDRMLGEIEERFGALiARVDwVSLGGgIHFT-------- 187 :: :::::::::: :::::::::::::::: :::: ::::: :::: d1b5ta_ 153 VDaGANRAITQFF-------FDVESYLRFRDRCVSAgIDVE-IIPGI-LPVSnfkqakkf 203 query 188 -----------------------------GDDYPVDaFSARLRAFSdrygvQIYLEPGE- 217 ::::::: ::::::::: :::::::: d1b5ta_ 204 admtnvripawmaqmfdgldddaetrklvGANIAMDmVKILSREGV-----KDFHFYTLn 258 query 218 ASITksttlevtvldtlynknlaivdssieahmldlliyretakvlpnegshsymicgks 277 :::: d1b5ta_ 259 RAEM-------------------------------------------------------- 262 query 278 clagdvfgefrfaeelkvgdrisfqdaagytmvkknwfngvkmpaiaireldgsvrtvre 337 d1b5ta_ 263 ----------------------------------------------------------sy 264 query 338 ftyadyeqsls 348 d1b5ta_ 265 aichtlgvrpa 275 FAST alignment (Normalized score: 5.01 Raw score:1550.00) query 1 MIETPYYLIDKAKLTRNMERIAHVREKS-GAKALLALKCFA------------TWSVFDL 47 ::::::: ::::::: d1b5ta_ 1 ----------------------------GQINVSFE-----FFPPRTSEMEQTLWNSIDR 27 query 48 MRD-YMDGTTSS-----------SLFEVRLGRERFGKETHAYSVAY---------GDNEI 86 ::: ::::::: :::::::::::::::::::: ::::: d1b5ta_ 28 LSSLKPKFVSV-TYGANSGERDRTHSIIKGIKDRTGLEAAPHL---TCIDATPDELRTIA 83 query 87 DEVVS-HADKIIFN---------------SISQLERFADKAAGIARGLRLNPQRLGEW-- 128 ::::: ::::::: ::::::::::: ::::::::::: d1b5ta_ 84 RDYWNNGIRHIVA-LRGDLPPGSGKPEMYASDLVTLLKEV-ADFDISVAAYP------EV 135 query 129 ---------DVPKVERVMD-RINGFMIHNNCE--NKDFGLFDRMLGEIEERFGALIARV- 175 :::::::::: ::::::: :::::::::::::::: d1b5ta_ 136 HPEAKSAQADLLNLKRKVDAGANRAIT-----QFFFDVESYLRFRDRCVS---------A 181 query 176 ---DWVSLGGGIHFTGDDY-------------------------------------PVDA 195 ::::::: :::: d1b5ta_ 182 GIDVEIIPGI---------LPVSNFKQAKKFADMTNVRIPAWMAQMFDGLDDDAETRKLV 232 query 196 FSARLRAFSDRYGVQ------IYLEPGEASITKSTTLEVTVLDTLYNKNLAIVDSSIEAH 249 ::::::::::: :::: d1b5ta_ 233 GANIAMDMVKI----LSREGVKDFH----------------------------------- 253 query 250 MLDLLIYRETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTM 309 d1b5ta_ 254 ------------------------------------------------------------ 254 query 310 VKKNWFNGVKMPAIAIRELDGSVRTVREFTYADYEQSLS--------------------- 348 d1b5ta_ 254 ---------------------------------------FYTLNRAEMSYAICHTLGVRP 274 query 349 - 349 d1b5ta_ 275 A 275 TMalign alignment (TM-score: 0.43 Raw score:148.07) query 1 MIETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKC----FAT-WSV-FDLMRDYMD- 53 : ::::::::::: ::: ::: ::::::::: d1b5ta_ 1 -------------------------G-QINVSFEFFPPRTSEMEQTLWNSIDRLSSLKPK 34 query 54 GTTSS----------SLFEVRLGRERFGKETHAYSVA--Y----GDNEIDEVV-SHADKI 96 ::::: :::::::::::::::::::::: : ::::::::: :::::: d1b5ta_ 35 FVSVTYGANSGERDRTHSIIKGIKDRTGLEAAPHLTCIDATPDELRTIARDYWNNGIRHI 94 query 97 IFN--------------SISQLERFADKAAGIARGLRLN-PQRLGE----WDVPKVERVM 137 ::: ::::::::::::: :::::::: :::::: :::::::::: d1b5ta_ 95 VALRGDLPPGSGKPEMYASDLVTLLKEVAD-FDISVAAYPEVHPEAKSAQADLLNLKRKV 153 query 138 D-RINGFMIHNNCENKDFGLFDRMLGEIEERFGALI---ARVDWVSLGGGIHF------- 186 : :::::::::: : : :::::::::::: ::::::::: :::: d1b5ta_ 154 DAGANRAITQFF--------F-D-VESYLRFRDRCVSAGIDVEIIPGI-LPVSNFKQAKK 202 query 187 --------------------------TGDD-YP-VDAFSARLRAFSDRYGVQIYLEPGEA 218 :::: :: ::::::::::: :: :::::::::: d1b5ta_ 203 FADMTNVRIPAWMAQMFDGLDDDAETRKLVGANIAMDMVKILSRE-GV--KDFHFYTLNR 259 query 219 SIT-------------KSTTLEVTVLDTLYNKNLAIVDSSIEAHMLDLLIYRETAKVLPN 265 ::: d1b5ta_ 260 AEMSYAICHTLGVRPA-------------------------------------------- 275 query 266 EGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAI 325 d1b5ta_ 276 ------------------------------------------------------------ 276 query 326 RELDGSVRTVREFTYADYEQSLS 348 d1b5ta_ 276 ----------------------- 276 HHsearch alignment (Probability: 0.02 E-value:0.67) query 98 FNSISQLERFADKAAGIARGLRLNPQRLGEWD--VPKVERVMDRIN-GFMIHNNCENKDF 154 :::::::::::::::::::::::::::::::: :::::::::::: ::::::::::::: d1b5ta_ 109 EMYASDLVTLLKEVADFDISVAAYPEVHPEAKSAQADLLNLKRKVDAGANRAITQFFFDV 168 query 155 GLFDRMLGEIEE 166 :::::::::::: d1b5ta_ 169 ESYLRFRDRCVS 180
Intermediate <-- 1.167 --> HitDALI alignment (Z-score: 8.7 Raw score:1044.10) d1b5ta_ 1 gqINVSFEFFPPRTsemEQTLWNSIDRLsSLKPkFVSVTYGANS----gerdRTHSIIKG 56 :::::::::::: ::::::::::: :::: :::::::::: :::::::: d1tz9a_ 1 --MKWGFRWYGAAG---DAIPLKHIRQI-PGIT-GVVGTLLNKLpgdvwtvaEIQALKQS 53 d1b5ta_ 57 IKDRTGLEAAPH-LTCID----------aTPDELRTIARDYWNNGIRHIVALrGDLP--- 102 :::::::::::: ::::: ::::::::::::::::::::::: :::: d1tz9a_ 54 VEQEGLALLGIEsVAIHDaikagtdqrdhYIDNYRQTLRNLGKCGISLVCYS-FKPIfgw 112 d1b5ta_ 103 ------------------------------------------------PGSGK------- 107 ::::: d1tz9a_ 113 aktdlayenedgslsllfdqavvenmqpedmyqlihsweeerlqqfqeLKAMYagvteed 172 d1b5ta_ 108 pemYASDLVTLLKEVAD---FDISVAAYpeVHPE------aksAQADLLNLKRKVDAGAN 158 :::::::::::::: :::::::: :::: ::::::::::::::::: d1tz9a_ 173 lveNLRYFLERVIPVCEeenIKMGIHPD-dPPWEifglpritkNLADLKRILSLVDSPAN 231 d1b5ta_ 159 RAITQFF----fdvESYLRFRDRCvsagiDVEIIPGILpvsnfkqakkfadmtnvRIPAW 214 ::::::: :::::::::: ::::::::: ::::: d1tz9a_ 232 GITFCTGslgadptNDLPTMIREI----gHRINFVHFR----------------nVKYLG 271 d1b5ta_ 215 maqmfdgldddaetrklvGANI--amdMVKILSRE----GVKD-FHFY------------ 255 :::: :::::::: :::: :::: d1tz9a_ 272 -----------ehrfeetAHPSvagslDMAELMQAlvdvGYEGvIRPDhgraiwdekamp 320 d1b5ta_ 256 tLNRA---EMSYAICHTLG-vrpa 275 :::: ::::::::::: d1tz9a_ 321 gYGLYdraMGLTYIQGLYEatkak 344 FAST alignment (Normalized score: 4.30 Raw score:1322.00) d1b5ta_ 1 GQI-NVSFEFFPPRTSEMEQTLWN------SIDRLSS--LKPKFVSVTYGANSGE----- 46 :::::::: :::::: :::::::::: d1tz9a_ 1 ---MKWGFRWYG------------AAGDAIPLKHIR-QIPGITGVVGTL------LNKLP 38 d1b5ta_ 47 -----RDRTHSIIKGIKDRTGLE-AAP--HLTCIDA-----------TPDELRTIARDYW 87 :::::::::::: ::::: ::: ::::: ::::::::::::: d1tz9a_ 39 GDVWTVAEIQALKQSVE-QEGLALLGIESVAIHD--AIKAGTDQRDHYIDNYRQTLRNLG 95 d1b5ta_ 88 NNGIRHIVALRGDLPPGSGKPEM------------------------------------- 110 :::::::::: d1tz9a_ 96 KCGISLVCYS-------------FKPIFGWAKTDLAYENEDGSLSLLFDQAVVENMQPED 142 d1b5ta_ 111 ---------------------------------YASDLVTLLKEV---ADFDISVAAYPE 134 :::::::::::: ::::::::: d1tz9a_ 143 MYQLIHSWEEERLQQFQELKAMYAGVTEEDLVENLRYFLERVIPVCEEENIKMGIHP--- 199 d1b5ta_ 135 VHPEAKSAQA---------------DLLNLKRKVDAGA------NRAITQFFFDVE---- 169 :::::::::: ::::: d1tz9a_ 200 ----------DDPPWEIFGLPRITKNLADLKRILS---LVDSPANGITF-------CTGS 239 d1b5ta_ 170 ------------------------------------------------SYLRFRDRCVSA 181 :::::::::::: d1tz9a_ 240 LGADPTNDLPTMIREIGHRINFVHFRNVKYLGEHRFEETAHPSVAGSLDMAELMQALVDV 299 d1b5ta_ 182 GIDVE--IIPGILPVSNFKQAKKFADMTNVRIPAWMAQMFDGLDDDAETRKLV------- 232 : :::: d1tz9a_ 300 G----YEGVIR------------------------------------------PDHGRAI 313 d1b5ta_ 233 ---------GANIAMDMVKILSREGVKDFHFYTLNRAEMSYAICHTLGVRPA-------- 275 :::::::::::::: d1tz9a_ 314 WDEKAMPGYGLYDRAMGLTYIQG-----------------------------LYEATKAK 344 TMalign alignment (TM-score: 0.61 Raw score:167.75) d1b5ta_ 1 GQINVSFEFFPPRTSEMEQTLWNSIDRLSSLKPKFVSVTYGANSGER-DR--TH-SIIKG 56 :::::::::::: :: ::::::::: :::: ::::::::::::: :: :: ::::: d1tz9a_ 1 --MKWGFRWYGAAG--DA-IPLKHIRQI-PGIT-GVVGTLLNKLPGDVWTVAEIQALKQS 53 d1b5ta_ 57 IKDRTGLEAAPH-LTCID----------ATPDELRTIARDYWNNGIRHIVALRGDLP--- 102 :::::::::::: ::::: ::::::::::::::::::::::::::::: d1tz9a_ 54 VEQEGLALLGIESVAIHDAIKAGTDQRDHYIDNYRQTLRNLGKCGISLVCYSFKPIFGWA 113 d1b5ta_ 103 --------------------------------------------P-GS--GK--P----E 109 : :: :: : : d1tz9a_ 114 KTDLAYENEDGSLSLLFDQAVVENMQPEDMYQLIHSWEEERLQQFQELKAMYAGVTEEDL 173 d1b5ta_ 110 -MYASDLVTLLKEV--ADFDISVAAYP-EVHP----EAK-SAQADLLNLKRKVDAGANRA 160 ::::::::::::: ::::::::::: :::: ::: :::::::::::::::::::: d1tz9a_ 174 VENLRYFLERVIPVCEEENIKMGIHPDDPPWEIFGLPRITKNLADLKRILSLVDSPANGI 233 d1b5ta_ 161 ITQ-F--FF-DVESYLRFRDRCVSAGIDVEIIPGILPVSNFKQAKKFADMTNVRIPAWMA 216 ::: : :: :::::::::: :: :::::::::::: :::::: d1tz9a_ 234 TFCTGSLGADPTNDLPTMIR-EI---GHRINFVHFRNV----------------KYLGEH 273 d1b5ta_ 217 QMFDGLDDDAETRKLVGA-NIAMDMVKILSREGVK---D---FHFYT------------L 257 ::: :: ::: ::::::::::: :::: : ::::: : d1tz9a_ 274 RFE---------ET-AHPSVAGSLDMAELM-QALVDVGYEGVIRPDHGRAIWDEKAMPGY 322 d1b5ta_ 258 NR--AEMSYAICHTLGVR----PA 275 :: :::::::::::::: d1tz9a_ 323 GLYDRAMGLTYIQGLYEATKAK-- 344 HHsearch alignment (Probability: 0.73 E-value:0.01) d1b5ta_ 39 TYGANSGER-DRTHSIIKGIKDRTGLEA--A---P-H--L----TCIDATPDELRTIARD 85 ::::::::: :::::::::::::::::: : : : : :::::::::::::::: d1tz9a_ 34 LNKLPGDVWTVAEIQALKQSVEQEGLALLGIESVAIHDAIKAGTDQRDHYIDNYRQTLRN 93 d1b5ta_ 86 YWNNGIRHIV 95 :::::::::: d1tz9a_ 94 LGKCGISLVC 103