Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T515_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1twda_ | Copper homeostasis protein CutC | CutC-like (Pfam 03932) | TIM beta/alpha-barrel | α/β |
| Hit | d1eqca_ | Exo-beta-(1,3)-glucanase | (Trans)glycosidases | TIM beta/alpha-barrel | α/β |
Query <-- 1.289 --> IntermediateDALI alignment (Z-score: 8.2 Raw score:868.70) query 1 mietpyylidkakltrnmeriahvreksgAKALLALkcFATWsvFDLMRD-YMDGTTS-- 57 ::::::: :::: :::::: ::::::: d1twda_ 1 -----------------------------ALLEICC--YSME-cALTAQQnGADRVELca 28 query 58 -------SSLF-EVRLGRERFGKETHAYSVA-------------yGDNEIDEVVS-HADK 95 :::: ::::::::::::::::::: :::::::::: :::: d1twda_ 29 apkegglTPSLgVLKSVRQRVTIPVHPIIRPrggdfcysdgefaaILEDVRTVRElGFPG 88 query 96 IIFNS--------ISQLERFADKAAGIARGLR-LNPQrlgEWDVPKV-ERVMD-RINGFM 144 ::::: ::::::::::::::::::: :::: ::::::: ::::: :::::: d1twda_ 89 LVTGVldvdgnvdMPRMEKIMAAAGPLAVTFHrAFDM---CANPLYTlNNLAElGIARVL 145 query 145 IHnncenkdfglfDRMLGEIEErFGALiARVDWVSLGGGIHFtgddypvdaFSARLRAFS 204 :: ::::::::: :::: :::::::::::::: ::::::::: d1twda_ 146 TS-----gqksdaLQGLSKIME-LIAH-RDAPIIMAGAGVRA--------eNLHHFLDAG 190 query 205 drygvqIYLEPGeaSITKsTTLE-VTVLdtlynknlaivdssieahmldlliyretakvl 263 :::::: :::: :::: :::: d1twda_ 191 -----vLEVHSS--AGAW-QASPmRYRN-------------------------------- 210 query 264 pnegshsymicgksclagdvfgefrfaeelkvgdrisfqDAAGYtmvkknwfngvkmpai 323 ::::: d1twda_ 211 ---------------------------------------YSRYI---------------- 215 query 324 aireldgsvrtvreftyadyeqsls 348 d1twda_ 216 ------vdgaavaemkgiierhqak 234 FAST alignment (Normalized score: 4.77 Raw score:1361.00) query 1 MIETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFA--TWSVFDLMRD-YMDGTTS 57 :::::: :::::::::: ::::::: d1twda_ 1 -----------------------------ALLEIC-----CYSMECALTAQQNGADRVEL 26 query 58 ----------SSLFEVRLGRERFGKETHAYSVAY----------------GDNEIDEVVS 91 ::::::::::::::::::::: :::::::::: d1twda_ 27 CAAPKEGGLTPSLGVLKSVRQRVTIPVHPII---RPRGGDFCYSDGEFAAILEDVRTVRE 83 query 92 -HADKIIFN---------SISQLERFADKAAGIARGLRLNPQRLGEW---------DVPK 132 ::::::: ::::::::::::::::::: :::: d1twda_ 84 LGFPGLVT-GVLDVDGNVDMPRMEKIMAAAGPLAVTF----------HRAFDMCANPLYT 132 query 133 VERVMD-RINGFMIHNNCENKDFG--------LFDRMLGEIEERFGALIARV----DWVS 179 :::::: ::::::: ::::::::::: :::: d1twda_ 133 LNNLAELGIARVLT----------SGQKSDALQGLSKIMELIA---------HRDAPIIM 173 query 180 LGGGIHFTGDD--YPVDAFSARLRAFSDRYGVQ---IYLEPGEASITK----STTLEVTV 230 ::::: :::::::: ::::: :::::::: d1twda_ 174 AGAGV------RAENLHHFLD------------AGVLEVHS-------SAGAWQASPMRY 208 query 231 LDTLYNKNLAIVDSSIEAHMLDLLIYRETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFA 290 d1twda_ 209 ------------------------------------------------------------ 209 query 291 EELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVREFTYADYEQSLS-- 348 d1twda_ 209 ----------------------------------------------------------RN 210 query 349 ------------------------ 349 d1twda_ 211 YSRYIVDGAAVAEMKGIIERHQAK 234 TMalign alignment (TM-score: 0.42 Raw score:146.57) query 1 MIETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSS-- 58 ::::: ::: ::::::::::::::::::: d1twda_ 1 ----------------------------ALLEI-CCY--SMECALTAQQNGADRVELCAA 29 query 59 ------SLF--EVRLGRERFGKETHAYSVA-------------YGDNEIDEVVS-HADKI 96 ::: ::::::::::::::::::: ::::::::::: ::::: d1twda_ 30 PKEGGLTPSLGVLKSVRQRVTIPVHPIIRPRGGDFCYSDGEFAAILEDVRTVRELGFPGL 89 query 97 IFNS------IS--QLERFADKAAGIARGLRLNPQRLGEWD-VPKVERVMD-RINGFMIH 146 :::: :: ::::::::::::::::::::: :::: ::::::::: :::::::: d1twda_ 90 VTGVLDVDGNVDMPRMEKIMAAAGPLAVTFHRAFD--MCANPLYTLNNLAELGIARVLTS 147 query 147 -NNCENKDFGLFDRMLGEIEERFGALIARVDWVSLGGGIHFTGDDYPVDAFSARLRAFSD 205 ::: : :::::::::: :::: :::::::::::::: :: ::::::::: d1twda_ 148 GQKS-D-----ALQGLSKIME-LIAH-RDAPIIMAGAGVRA----EN---LHHFLDAGV- 191 query 206 RYGVQIYLEPGEASITKSTTLEVTVLDTLYNKNLAIVDSSIEAHMLDLLIYRETAKVLPN 265 :::: :: : ::: ::::: :: d1twda_ 192 ----LEVH-SS-A-GAW-QASPM--------------RY--------------------- 208 query 266 EGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTM---------------- 309 :: :::::: d1twda_ 209 ----------RN--------------------------YSRYIVDGAAVAEMKGIIERHQ 232 query 310 --VKKNWFNGVKMPAIAIRELDGSVRTVREFTYADYEQSLS 348 d1twda_ 233 AK--------------------------------------- 234 HHsearch alignment (Probability: 0.20 E-value:0.04) query 45 FDLMRDYMDGTTSSSLFEVRLGRERFGKETHAYSVAYG-------------DNEIDEVVS 91 :::::::::::::::::::::::::::::::::::::: ::::::::: d1twda_ 24 VELCAAPKEGGLTPSLGVLKSVRQRVTIPVHPIIRPRGGDFCYSDGEFAAILEDVRTVRE 83 query 92 HADKIIF---------NSISQLERFADKAAGIARGLRLNPQRLGEWDVPKVERVMDRING 142 ::::::: :::::::::::::::::::: ::::::::::::::::::: d1twda_ 84 LGFPGLVTGVLDVDGNVDMPRMEKIMAAAGPLAVTF-----HRAFDMCANPLYTLNNLAE 138 query 143 FMI-HNNCENKDFGLFDRMLGEIEERFGALIARVDWVSLGGGI 184 ::: ::::::::::: :::::::::::::::::: ::::::: d1twda_ 139 LGIARVLTSGQKSDA-LQGLSKIMELIAHRDAPI--IMAGAGV 178
Intermediate <-- 1.370 --> HitDALI alignment (Z-score: 10.0 Raw score:1160.10) d1twda_ 1 -------ALLEICCY--------------------------------------------- 8 :::::::: d1eqca_ 1 awdydnnVIRGVNLGgwfvlepymtpslfepfqngndqsgvpvdeyhwtqtlgkeaalri 60 d1twda_ 9 ---------SMECALTAQQNGADRVELCA-------apkeggltpSLGVLKSVRQRVT-- 50 :::::::::::::::::::: ::::::::::::: d1eqca_ 61 lqkhwstwiTEQDFKQISNLGLNFVRIPIgywafqlldndpyvqgQVQYLEKALGWARkn 120 d1twda_ 51 -IPVHPIIRPRGGDF-----------------cYSDGEFAAILEDVRTVRELG----FPG 88 :::::::::::::: :::::::::::::::::::: ::: d1eqca_ 121 nIRVWIDLHGAPGSQngfdnsglrdsynfqngdNTQVTLNVLNTIFKKYGGNEysdvVIG 180 d1twda_ 89 LVTG----vldVDGNvDMPRMEKIMAAAG----PLAVTFHraFDMCaNPLYTLNNLAE-- 138 :::: :::: ::::::::::::: ::::::: :::: ::::::::::: d1eqca_ 181 IELLneplgpvLNMDkLKQFFLDGYNSLRqtgsVTPVIIH--DAFQ-VFGYWNNFLTVae 237 d1twda_ 139 -LGIARVLTSgqksdALQG-----------------LSKIMELIAHrdAPIIMAGAgVRA 180 ::::::::: :::: :::::::::: :::::::: ::: d1eqca_ 238 gQWNVVVDHH-----HYQVfsggelsrnindhisvaCNWGWDAKKE--SHWNVAGE-WSA 289 d1twda_ 181 E-------------------------------------------------NLHHFLDA-- 189 : :::::::: d1eqca_ 290 AltdcakwlngvnrgaryegaydnapyigscqplldisqwsdehktdtrrYIEAQLDAfe 349 d1twda_ 190 GVLEVHS-SAGAWQaspmryrnysryivDGAA---vaEMKGIiERHQAK------ 234 ::::::: :::::: :::: ::::: :::::: d1eqca_ 350 YTGGWVFwSWKTEN---------apewsFQTLtynglFPQPV-TDRQFPnqcgfh 394 FAST alignment (Normalized score: 5.17 Raw score:1570.00) d1twda_ 1 -------ALLEICC---------------------------------------------- 7 :::::: d1eqca_ 1 AWDYDNNVIRGVN-LGGWFVLEPYMTPSLFEPFQNGNDQSGVPVDEYHWTQTLGKEAALR 59 d1twda_ 8 ---------YSMECALTAQQNGADRVELCAAPKEGGLTP--------------------- 37 :::::::::::::::::::: d1eqca_ 60 ILQKHWSTWITEQDFKQISNLGLNFVRIP----------IGYWAFQLLDNDPYVQGQVQY 109 d1twda_ 38 SLGVLKSVRQRVTIPVHPIIR-------------PRGGDFCY---------SDGEFAAIL 75 ::::::::: :::::::::: :::: ::::::::: d1eqca_ 110 LEKALGWAR-KNNIRVWIDL-HGAPGSQNGFDNSGLRD----SYNFQNGDNTQVTLNVLN 163 d1twda_ 76 EDVRTVREL------GFPGLVTGVLDVDGNV--------------DMPRMEKIMAAA--- 112 ::::::: :::::: ::::::::::: d1eqca_ 164 TIFKKYG--GNEYSDVVIGIE----------LLNEPLGPVLNMDKLKQFFLDGYNS-LRQ 210 d1twda_ 113 --GPLAVTFHRAFDM-CANPLYTLNNLAELGI---------ARVLTSGQKSDALQ----- 155 ::::::::: :::::::::: :::: d1eqca_ 211 TGSVTPVIIHD----AFQVFGYWNNF------LTVAEGQWNVVVD----------HHHYQ 250 d1twda_ 156 -------------GLSKIMELIAHRD------APIIMAGAGV------------------ 178 ::::::::: ::::::: d1eqca_ 251 VFSGGELSRNINDHISVACNWG----WDAKKESHWNVAG---EWSAALTDCAKWLNGVNR 303 d1twda_ 179 ---------------------------------RAENLHHFLDA---GVLEVHS-SAGAW 201 :::::::::: ::::::: :::: d1eqca_ 304 GARYEGAYDNAPYIGSCQPLLDISQWSDEHKTDTRRYIEAQLD-AFEYTGGWVFWSWKT- 361 d1twda_ 202 QASPMRYRNYSRYIV-------DGAAVAEMKGIIERHQAK-------------------- 234 :::::: d1eqca_ 362 ---------------ENAPEWSFQTLTY------------NGLFPQPVTDRQFPNQCGFH 394 TMalign alignment (TM-score: 0.69 Raw score:161.94) d1twda_ 1 -------ALLEICCY-S------------------------------------------- 9 :::::::: : d1eqca_ 1 AWDYDNNVIRGVNLGGWFVLEPYMTPSLFEPFQNGNDQSGVPVDEYHWTQTLGKEAALRI 60 d1twda_ 10 --------ME--CALTAQQNGADRVELCAAPKE-GGLT----------PSLGVLKSVRQR 48 :: :::::::::::::::::: : :: :::::::::::: d1eqca_ 61 LQKHWSTWITEQDFKQISNLGLNFVRIPIG--YW--AFQLLDNDPYVQGQVQYLEKALGW 116 d1twda_ 49 VT---IPVHPIIRPR--GGD------------FC---YSDGEFAAILEDVRTVRE-LG-- 85 :: :::::::::: ::: :: :::::::::::::::::: :: d1eqca_ 117 ARKNNIRVWIDLHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLNTIFKKYGGNEYSD 176 d1twda_ 86 FPGLVTGV--L----DVDG-NVD-MPRMEKIMA-AAGPLAVTFHRAFDMCANPLYTLNNL 136 :::::::: : :::: ::: ::::::::: :::::::::: :::: ::::::::: d1eqca_ 177 VVIGIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIH--DAFQ-VFGYWNNFL 233 d1twda_ 137 AE---LGIARVLTSGQK-S---D-------AL-QGLSKIMELIAHRDAPIIMAGAGVR-- 179 :: :::::::::::: : : :: :::::::::::: ::::::::::: d1eqca_ 234 TVAEGQWNVVVDHHHYQVFSGGELSRNINDHISVACNWGWDAKKE--SHWNVAGEWSAAL 291 d1twda_ 180 ---------------------------------------------AE-NLHHFLDA--GV 191 :: :::::::: :: d1eqca_ 292 TDCAKWLNGVNRGARYEGAYDNAPYIGSCQPLLDISQWSDEHKTDTRRYIEAQLDAFEYT 351 d1twda_ 192 LEVHSSAGAWQASPMRYRNY--SRYIVDGAAV-A-EMKGIIER--HQ-----AK 234 :::::::::::: : :::::::: : :::::::: :: d1eqca_ 352 GGWVFWSWKTEN-------APE--WSFQTLTYNGLFPQPVTDRQFPNQCGFH-- 394 HHsearch alignment (Probability: 0.10 E-value:0.04) d1twda_ 10 MECALTAQQNGADRVELCAAPK----EGGLTP----SLGVLKSVRQ-RVTIPVHPIIRPR 60 :::::::::::::::::::::: ::: :: :::::::::: ::::::::::::: d1eqca_ 71 EQDFKQISNLGLNFVRIPIGYWAFQLLDN-DPYVQGQVQYLEKALGWARKNNIRVWIDLH 129 d1twda_ 61 ---------------GGDFCYSDGEFAAILEDVRTVRELGFP----GLV--TGVLDVD-- 97 ::::::::::::::::::::::::::: ::: ::::::: d1eqca_ 130 GAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLNTIFKKYGGNEYSDVVIGIELLNEPLG 189 d1twda_ 98 GNVDMPRM--------EKIMAAAGPLAVTFHRAFDMCANPLYT 132 :::::::: ::::::::::::::::::::::::::: d1eqca_ 190 PVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAFQVFGYWNNF 232