Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T515_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1hl2a_ | N-acetylneuraminate lyase | Aldolase | TIM beta/alpha-barrel | α/β |
| Hit | d1onwa2 | Isoaspartyl dipeptidase, catalytic domain | Metallo-dependent hydrolases | TIM beta/alpha-barrel | α/β |
Query <-- 1.316 --> IntermediateDALI alignment (Z-score: 8.3 Raw score:892.10) query 1 mietpyylidkakltrnmeriahvreksgaKALLALKCF----------aTWSVFDLMRD 50 ::::::::: :::::::::: d1hl2a_ 1 --------------------------tnlrGVMAALLTPfdqqqaldkasLRRLVQFNIQ 34 query 51 -YMDGTTSS-------------SLFEVRLGRERFG--KETHAYSVA----YGDNEIDEVV 90 :::::::: ::::::::::::: ::::::::: :::::::::: d1hl2a_ 35 qGIDGLYVGgstgeafvqslseREQVLEIVAEEAKgkIKLIAHVGCvstaESQQLAASAK 94 query 91 S-HADKIIFNS-----------ISQLERFADKAAGIARGLRLNPQRL-geWDVPKVERVM 137 : ::::::::: ::::::::::::::::::::::::: :::::::::: d1hl2a_ 95 RyGFDAVSAVTpfyypfsfeehCDHYRAIIDSADGLPMVVYNIPARSgvkLTLDQINTLV 154 query 138 DR--INGFMIHNncenkdfglfdrMLGEIEErFGALIARVdWVSLGGGIhftgddypvda 195 :: :::::::: ::::::: :::::::: :::::::: d1hl2a_ 155 TLpgVGALKQTS-----------gDLYQMEQ-IRREHPDL-VLYNGYDE----------- 190 query 196 fsARLRAFSdrygvqIYLEPGEASITksttlevtvldtlynknlaivdssieahmldlli 255 ::::::: ::::::::::: d1hl2a_ 191 ifASGLLAG-----aDGGIGSTYNIM---------------------------------- 211 query 256 yretakvlpnegshsymicgksclagdvfgefrfaeelkvgdrisfqdaagytmvkknwf 315 d1hl2a_ 212 ---------gwryqgivkalkegdiqtaqklqtecnkvidlliktgvfrglktvlhymdv 262 query 316 ngvkmpaiaireldgsvrtvreftyadyeqsls 348 d1hl2a_ 263 vsvplcrkpfgpvdekylpelkalaqqlmqerg 295 FAST alignment (Normalized score: 3.89 Raw score:1246.00) query 1 MIETP----------------YYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSV 44 :::::::::::::::::: d1hl2a_ 1 -----TNLRGVMAALLTPFDQQQALDKASLRRLVQFNIQ--------------------- 34 query 45 FDLMRD-YMDGTTSS---------------SLFEVRLGRERF--GKETHAYSVA--YGDN 84 :::::: :::::::::::: :::::::: :::: d1hl2a_ 35 ------QGIDGLY--VGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHV--GCVSTA 84 query 85 EIDEVVS-----HADKIIFN------------SISQLERFADKAAGIARGLRLNPQRLGE 127 ::::::: ::::::: ::::::::::::::::::::::: d1hl2a_ 85 ESQQLAASAKRYGFDAVSA-VTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIP----- 138 query 128 ------WDVPKVERV--MDRINGFMIHNNCENKDFGLFDRMLGE--IEERFGALIARV-- 175 ::::::::: :::::::::: :::::::::::: d1hl2a_ 139 ARSGVKLTLDQINTLVTLPGVGALKQT-----------------SGDLYQMEQIRREHPD 181 query 176 DWVSLGGGIHFTGDD-----------------------YPVDAFSARLRAFSDRYGVQIY 212 ::::: :::::::::::::: d1hl2a_ 182 LVLYN----------GYDEIFASGLLAGADGGIGSTYNIMGWRYQGIVKALK-------- 223 query 213 LEPGEASITKSTTLEVTVLDTLYNKNLAIVDSSIEAHMLDLLIYRETAKVLPNEGSHSYM 272 d1hl2a_ 224 ------------------------------------------------------------ 224 query 273 ICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSV 332 d1hl2a_ 224 ------------------------------------------------------------ 224 query 333 RTVREFTYADYEQSLS-------------------------------------------- 348 d1hl2a_ 224 ----------------EGDIQTAQKLQTECNKVIDLLIKTGVFRGLKTVLHYMDVVSVPL 267 query 349 ---------------------------- 349 d1hl2a_ 268 CRKPFGPVDEKYLPELKALAQQLMQERG 295 TMalign alignment (TM-score: 0.43 Raw score:149.67) query 1 ---------------MIETPYYLIDKAKLTRNMERIAHVREKSGAKALLALK--CF--A- 40 :::::::::::::::::::: :: :::::::: :: : d1hl2a_ 1 TNLRGVMAALLTPFD----QQQALDKASLRRLVQFNIQQ--GI-DGLYVGGSTGEAFVQS 53 query 41 --T-WSVFDLMRDYM-----DGTTSSS--L-FEVRLGRER--FGKETHAYSVA------- 80 : ::::::::::: ::::::: : ::::::::: ::::::::::: d1hl2a_ 54 LSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFYYPFSF 113 query 81 -YGDNEIDEVVS-H--ADKIIFN--------S-ISQLERFADKAAGIARGLRLNPQRLGE 127 ::::::::::: : ::::::: : ::::::::: :::::::::::: :: d1hl2a_ 114 EEHCDHYRAIIDSADGLPMVVYNIPARSGVKLTLDQINTLVT-LPGVGALKQTSG---DL 169 query 128 WDVPKVERVMDRINGFMIHNNCENKDFGLFDRMLGEIEERFGALIARVDWVSLGGGIHFT 187 ::::::::::: ::::::::: : :::::::::: :::::::::: d1hl2a_ 170 YQMEQIRREHP-DLVLYNGYD-----------E--IFASGLLAGA----DGGIGSTYNI- 210 query 188 GDDYPVDAFSARLRAFSDRYG------------------------VQIYLEPGE-AS--I 220 : ::::::::::::: ::: :: : d1hl2a_ 211 -----M--GWRYQGIVKALKEGDIQTAQKLQTECNKVIDLLIKTG------VFRGLKTVL 257 query 221 T----KSTTLEVTVLDTLYNKNLAIVDSSIEAHMLDLLIYRETAKV-------------- 262 : ::::: ::::: ::::: d1hl2a_ 258 HYMDVVSVPL----------------------CRKPF----GPVDEKYLPELKALAQQLM 291 query 263 ----LPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGV 318 d1hl2a_ 292 QERG-------------------------------------------------------- 295 query 319 KMPAIAIRELDGSVRTVREFTYADYEQSLS 348 d1hl2a_ 296 ------------------------------ 296 HHsearch alignment (Probability: 0.05 E-value:0.04) query 1 MIETPYYL-IDKAKLTRNMERIAHVREKSGAKAL---LALKCFATWSVFDLMRD 50 :::::::: ::::::::::::::::::::::::: ::::::::::::::::: d1hl2a_ 102 SAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPARSGVKLTLDQINTLVT 155
Intermediate <-- 1.130 --> HitDALI alignment (Z-score: 9.4 Raw score:1061.80) d1hl2a_ 1 tnlrgVMAA-LLTP----fdQQQAldkaSLRRlVQFNIQQGIDGLYVGGStgeAFVQSls 55 :::: :::: :::: :::: ::::::::::::::::: ::::: d1onwa2 1 ---gfIDQHvHLIGgggeagPTTR---tPEVA-LSRLTEAGVTSVVGLLG--tDSISR-- 49 d1hl2a_ 56 EREQVLEIVAeEAKG-KIKLIAHVG--CVST----AESQQLAASakRYGFdAVSAVT--- 105 :::::::::: :::: ::::::::: :::: ::::::::: :::: :::::: d1onwa2 50 HPESLLAKTR-ALNEeGISAWMLTGayHVPSrtitGSVEKDVAI--IDRV-IGVXCAisd 105 d1hl2a_ 106 pFYYPFSFEEHCDHYRAIIDSA--DGLP-MVVYNIPArsgvKLTLDQINTLV-tLPGV-- 159 ::::::::::::::::::::: :::: :::::::: ::::::::::: :::: d1onwa2 106 hRSAAPDVYHLANMAAESRVGGllGGKPgVTVFHMGD---sKKALQPIYDLLenCDVPis 162 d1hl2a_ 160 GALKQTSG----DLYQMEQIRREHpdLVLYNGYDE----IFASGLLAG--------aDGG 203 :::::::: :::::::::::: ::::::::: ::::::::: ::: d1onwa2 163 KLLPTHVNrnvpLFEQALEFARKG--GTIDITSSIdepvAPAEGIARAvqagiplarVTL 220 d1hl2a_ 204 IGST---ynIMGWRYQGIVKALKE-GDIQTaqklqtecnkvidlliktgvfrglktvlhy 259 :::: ::::::::::::::: ::::: d1onwa2 221 SSDGngsgvAGFETLLETVQVLVKdYDFSI------------------------------ 250 d1hl2a_ 260 mdvvsvplcrkpfgpvdekylpelkalaqqlmqerg 295 d1onwa2 251 ---------------sdalrpltssvagflnltgkg 271 FAST alignment (Normalized score: 4.52 Raw score:1278.00) d1hl2a_ 1 TNLRGVMAALLTPFDQ------------------QQALDKASLRR--LVQFNIQQGIDGL 40 ::::: ::::::::::::: d1onwa2 1 ----------------GFIDQHVHLIGGGGEAGPTTRTP------EVALSRLTEAGVTSV 38 d1hl2a_ 41 YVGGST----GEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVG--CVSTA-------ESQ 87 : :::::::::::::::::::: :::::::: :::: ::: d1onwa2 39 V-----GLLGTDSISRHPESLLAKTRALNE---EGISAWML--TGAYHV-PSRTITGSVE 87 d1hl2a_ 88 QLAASAKRY---GFDAVSAVTPF------YYPFSFEEHCDHYRAIIDSADG-------LP 131 :::: ::::::: ::::::::::::::::::: :: d1onwa2 88 KDVA-----IIDRVIGVAC----AISDHRSAAPDVYHLANMAAESRVG---GLLGGKPGV 135 d1hl2a_ 132 MVVYNIPARSGVKL-----TLDQINTLVTLPGVGALKQTS---------------GDLYQ 171 ::::: :::::::::: ::::: d1onwa2 136 TVFHM---------GDSKKALQPIYDLLE-----------NCDVPISKLLPTHVNRNVPL 175 d1hl2a_ 172 MEQIRREH-PDLVLYNGYDE--------IFASGLLAGA-----------DGGIGSTY--- 208 :::::::: ::::::: ::::::: :::: d1onwa2 176 FEQALEFARKGGTIDI----TSSIDEPVAPAEGIA---RAVQAGIPLARVTLS----SDG 224 d1hl2a_ 209 -------NIMGWRYQGIVKALKEGDIQTAQKLQTECNKVIDLLIKTGVFRGLKTVLHYMD 261 :::::::::::::: d1onwa2 225 NGSGVAGFETLLETVQVLVKD--------------------------------------- 245 d1hl2a_ 262 VVSVPLCRKPFGPVDEKYLPELKALAQQLMQERG-------------------------- 295 d1onwa2 246 ----------------------------------YDFSISDALRPLTSSVAGFLNLTGKG 271 TMalign alignment (TM-score: 0.54 Raw score:160.10) d1hl2a_ 1 -TNLRGVMAALLTPF-----DQQQ--ALD-KASLRRLVQFNIQQGIDGLYVGGSTGEAFV 51 ::::::::::: : : :: ::::::::::::::::::: :::: d1onwa2 1 G---FIDQHVHLIGGGGEAG---PTT--RT--PE-VALSRLTEAGVTSVVGLLG--TDSI 47 d1hl2a_ 52 QSLSEREQVLEIVAEEAK-GKIKLIAHVG-CVSTAESQQLA-ASAKRYGFDAVSAVTP-- 106 :: :::::::::::::: :::::::::: ::::::::::: :::::::::::::::: d1onwa2 48 SR--HPESLLAKTRALNEEGISAWMLTGAYHVPSRTITGSVEKDVAIIDRVIGVACAISD 105 d1hl2a_ 107 --FYYPFSFEEHCDHYRAIIDSA--DGLP-MVVYNIPARSGVKLT-LDQINTLVTLPGVG 160 ::::: ::::::::::::::: :::: ::::::::: ::::: :::::::::::::: d1onwa2 106 HRSAAPD-VYHLANMAAESRVGGLLGGKPGVTVFHMGDS-KKALQPIYDLLENCDVPISK 163 d1hl2a_ 161 ALKQTS--G--DLYQMEQIRREHPDLVLYNG-YDE---IFASGLLAG--------ADGGI 204 :::::: : :::::::::::: :::::: ::: ::::::::: ::::: d1onwa2 164 LLPTHVNRNVPLFEQALEFARKG--GTIDITSSIDEPVAPAEGIARAVQAGIPLARVTLS 221 d1hl2a_ 205 GSTY---NIMGWRYQGIVKALKEGDIQTA-----------------------QKLQTECN 238 :::: :::::::::::::: : ::::: d1onwa2 222 SDGNGSGVAGFETLLETVQVL-V-KDYDFSISDALRPLTSSVAGFLNLTGKG-------- 271 d1hl2a_ 239 KVIDLLIKTGVFRGLKTVLHYMDVVSVPLCRKPFGPVDEKYLPELKALAQQLMQERG 295 d1onwa2 272 --------------------------------------------------------- 272 HHsearch alignment (Probability: 0.73 E-value:0.00) d1hl2a_ 4 RGVMAALLTPFDQQQALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFV 51 :::::::::::::::::::::::::::::::::::::::::::::::: d1onwa2 33 AGVTSVVGLLGTDSISRHPESLLAKTRALNEEGISAWMLTGAYHVPSR 80