Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T515_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1thfd_ | Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF | Ribulose-phoshate binding barrel | TIM beta/alpha-barrel | α/β |
| Hit | d1itua_ | Renal dipeptidase | Metallo-dependent hydrolases | TIM beta/alpha-barrel | α/β |
Query <-- 1.415 --> IntermediateDALI alignment (Z-score: 10.2 Raw score:987.30) query 1 mietpyylidkakltrnmeriahvreksGAKALLALK-----------------cfATWS 43 ::::::::: :::: d1thfd_ 1 --------------------------mlAKRIIACLDvkdgrvvkgsnfenlrdsgDPVE 34 query 44 VFDLMR-DYMDGTTSS-----------SLFEVRLGRERFGKETHAYSV-AYGDnEIDEVV 90 :::::: ::::::::: ::::::::::::::::::::: :::: :::::: d1thfd_ 35 LGKFYSeIGIDELVFLditasvekrktMLELVEKVAEQIDIPFTVGGGiHDFE-TASELI 93 query 91 S-HADKIIFNS-----ISQLERFADKAAgIARGLRLNPQ---------------rlgeWD 129 : ::::::::: :::::::::::: :::::::::: :: d1thfd_ 94 LrGADKVSINTaavenPSLITQIAQTFGsQAVVVAIDAKrvdgefmvftysgkkntgiLL 153 query 130 VPKVERVMD-RINGFMIHN--NCENKDFglfdrMLGEIEeRFGALIarVDWVSLGGGIHF 186 ::::::::: ::::::::: ::::::: :::::: :::::: :::::::::::: d1thfd_ 154 RDWVVEVEKrGAGEILLTSidRDGTKSG----yDTEMIR-FVRPLT--TLPIIASGGAGK 206 query 187 tgddypvDAFSARLRAFSdrygvqIYLEPGEASITksttlevtvldtlynknlaivdssi 246 ::::::::::: ::::::::::: d1thfd_ 207 -------MEHFLEAFLAG-----aDAALAASVFHF------------------------- 229 query 247 eahmldlliyretakvlpnegshsymicgksclagdvfgefrfaeelkvgdrisfqdaag 306 d1thfd_ 230 ------------------------------------------------------------ 230 query 307 ytmvkknwfngvkmpaiaireldgsvrtvreftyadyeqsls 348 d1thfd_ 230 ------------------reidvrelkeylkkhgvnvrlegl 253 FAST alignment (Normalized score: 5.37 Raw score:1594.00) query 1 MIETPYYLIDKAKLTRNMERIAHVREKS--GAKALLALKCFA------------------ 40 ::::::: d1thfd_ 1 ----------------------------MLAKRIIAC-----LDVKDGRVVKGSNFENLR 27 query 41 ----TWSVFDLMRD-YMDGTTSS------------SLFEVRLGRERFGKETHAYSVAY-G 82 :::::::::: ::::::: :::::::::::::::::: :::: : d1thfd_ 28 DSGDPVELGKFYSEIGIDELVF-LDITASVEKRKTMLELVEKVAEQIDIPFTV-GGGIHD 85 query 83 DNEIDEVV-SHADKIIFNSISQLERFADK----AAGI---ARGLRLNPQRLGEW------ 128 :::::::: :::::::: :::::::::: :::: ::::::: d1thfd_ 86 FETASELILRGADKVSI--NTAAVENPSLITQIAQTFGSQAVVVAID-------AKRVDG 136 query 129 ----------------DVPKVERVMD-RINGFMIHN----NCENKDFGLFDRMLGE---I 164 :::::::::: ::::::: ::::: : d1thfd_ 137 EFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILL--TSIDRDGTK-----------SGYD 183 query 165 EERFGALIARV-DWVSLGGGIHFTGDDYPVDA-FSARLRAFSDRYGVQIYLEPGEASITK 222 ::::::::::: ::::::::: :::::::::: ::: ::::::::: d1thfd_ 184 TEMIRFVRPLTTLPIIASGGA-----------GKMEHFLEAFL-AGA-DAALAASVF--- 227 query 223 STTLEVTVLDTLYNKNLAIVDSSIEAHMLDLLIYRETAKVLPNEGSHSYMICGKSCLAGD 282 d1thfd_ 228 ------------------------------------------------------------ 228 query 283 VFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVREFTYAD 342 d1thfd_ 228 ------------------------------------------------------------ 228 query 343 YEQSLS-------------------------- 348 d1thfd_ 228 ------HFREIDVRELKEYLKKHGVNVRLEGL 253 TMalign alignment (TM-score: 0.36 Raw score:125.07) query 1 -------------MIETPYYLID---------KAK-L-TRNMERIAHVREKSGAKALLAL 36 :::: ::: : :::::::::: :: : :::::: d1thfd_ 1 MLAKRIIACLDVK------DGRVVKGSNFENLRDSGDPVELGKFYSEI-GI-D-ELVFLD 51 query 37 --KC--FA-T-WSVFDLMR--D-YMDGTT--SSSLFEVRLGRERFGKETHAY-S-VAYGD 83 :: :: : :::::::: : :::::: ::::::::::::::::::::: : ::::: d1thfd_ 52 ITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAAVENPS 111 query 84 NEIDEVVSHADKIIFNSISQLERFADKAAGIARGLRLNPQ------RL-------G-EWD 129 :::::::::::: :::::::::: :: : ::: d1thfd_ 112 -LITQIAQTFGSQ-----------------AVVVAIDAKRVDGEFMVFTYSGKKNTGILL 153 query 130 VPKVERVMDR-I-NGFMIHNNCENKDFGLFDRMLGEIEERFGALIA-RVDWVSLGGGIHF 186 : :::::::: : :::::::::::: :::: : :::::::::: ::::::::: : : d1thfd_ 154 R-DWVVEVEKRGAGEILLTSIDRDG---TKSG-Y--DTEMIRFVRPLTTLPIIASG-G-A 204 query 187 TGDDYPVDAFSARLRAFSDRYGVQIYLEP--GEAS------------------------- 219 : :: ::::::: :::::::::: :: d1thfd_ 205 -----G--KM-EHFLEAF-LAGADAALAASV--FHFREIDVRELKEYLKKHGVNVRLEGL 253 query 220 ITKSTTLEVTVLDTLYNKNLAIVDSSIEAHMLDLLIYRETAKVLPNEGSHSYMICGKSCL 279 d1thfd_ 254 ------------------------------------------------------------ 254 query 280 AGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVREFT 339 d1thfd_ 254 ------------------------------------------------------------ 254 query 340 YADYEQSLS 348 d1thfd_ 254 --------- 254 HHsearch alignment (Probability: 0.08 E-value:0.02) query 62 EVRLGRERFGKETHAYSVAYGD-NEIDEVVSHADKIIF------NSISQLERFADKAAGI 114 :::::::::::::::::::::: ::::::::::::::: :::::::::::::::: d1thfd_ 185 EMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRELKEYLKKH 244 query 115 ARGLRLNP 122 :::::::: d1thfd_ 245 GVNVRLEG 252
Intermediate <-- 1.123 --> HitDALI alignment (Z-score: 7.6 Raw score:1006.30) d1thfd_ 1 ------------mlakRIIACLdvkdgRVVK-----------gsnFENLRDSgdpvelgk 37 :::::: :::: ::::::: d1itua_ 1 dffrdeaerimrdspvIDGHND----lPWQLldmfnnrlqderanLTTLAGT---htnip 53 d1thfd_ 38 FYSEIGI-DELVF-LDIT--ASVEKRKTMLELVEKVAEQI-------------------- 73 ::::::: ::::: :::: :::::::::::::::::::: d1itua_ 54 KLRAGFVgGQFWSvYTPCdtQNKDAVRRTLEQMDVVHRMCrmypetflyvtssagirqaf 113 d1thfd_ 74 -----DIPFTVGGGI---HDFETASELILRGADKVSIN-----TAAV------------- 107 :::::::::: :::::::::::::::::::: :::: d1itua_ 114 regkvASLIGVEGGHsidSSLGVLRALYQLGMRYLTLThscntPWADnwlvdtgdsepqs 173 d1thfd_ 108 -----ENPSLITQIAQTFgsqAVVVAIDakrvdgefmvftysgkkntgillrdWVVEVEK 162 ::::::::::::: ::::::: ::::::: d1itua_ 174 qglspFGQRVVKELNRLG---VLIDLAH---------------------vsvaTMKATLQ 209 d1thfd_ 163 RG-AGEILL--------tSIDRdgtksgydteMIRFVRPLT--TLPIIASGGAG------ 205 :: :::::: :::: ::::::::: ::::::::::: d1itua_ 210 LSrAPVIFShssaysvcaSRRN----------VPDDVLRLVkqTDSLVMVNFYNnyisct 259 d1thfd_ 206 ---KMEHFLEAFLAG-------ADAALAASvfHFREI-------DVRELKEYLKKHGV-- 246 :::::::::::: :::::::: ::::: :::::::::::::: d1itua_ 260 nkaNLSQVADHLDHIkevagarAVGFGGDFdgVPRVPegledvsKYPDLIAELLRRNWte 319 d1thfd_ 247 -----nVRLE--------------------------------------gl 253 :::: d1itua_ 320 aevkgaLADNllrvfeaveqasnltqapeeepipldqlggscrthygyss 369 FAST alignment (Normalized score: 4.36 Raw score:1333.00) d1thfd_ 1 MLAKRIIACLDVKDGRVVKGSNFENLRDSGD----------------------------- 31 d1itua_ 1 -------------------------------DFFRDEAERIMRDSPVIDGHNDLPWQLLD 29 d1thfd_ 32 ---------------------PVELGKFYSEIGIDELVFLDI-----TASVEKRKTMLEL 65 ::::::: :::::::::: ::::::::::::: d1itua_ 30 MFNNRLQDERANLTTLAGTHTNIPKLRA---GFVGGQFWSV-YTPCDTQNKDAVRRTLEQ 85 d1thfd_ 66 VEKVAEQI-------------------------DIPFTVGGG--------IHDFETASEL 92 :::::: :::::: :::::::::: d1itua_ 86 MDVVHR--MCRMYPETFLYVTSSAGIRQAFREGKVASLI---GVEGGHSIDSSLGVLRAL 140 d1thfd_ 93 ILRGADKVSINTAAVE------------------------------NPSLITQIAQTFGS 122 ::::::::: :::::::::: d1itua_ 141 YQLGMRYLT-------LTHSCNTPWADNWLVDTGDSEPQSQGLSPFGQRVVKELNR---- 189 d1thfd_ 123 Q-AVVVAIDAKRVDGEFMVFTYSGKKNTGIL----LRDWVVEVEKRGAGEILL------- 170 ::::: :::::::::: d1itua_ 190 -LGVLID------------------------LAHVSVATMKATLQ--------LSRAPVI 216 d1thfd_ 171 ----TSIDRDGTKSGYDTEM--------IRFVRP---LTTLPIIASGGA----------- 204 :::: :::::: :::::::: d1itua_ 217 FSHSSAYS------------VCASRRNVPDDVLRLVKQTDSLVMV----NFYNNYISCTN 260 d1thfd_ 205 -GKMEHFLEAFLAGA----------DAALAASVFHFREI----------------DVREL 237 ::::::::::: ::::: ::::: d1itua_ 261 KANLSQVADHLD---HIKEVAGARAVGFGG---------DFDGVPRVPEGLEDVSKYPDL 308 d1thfd_ 238 KEYLKKHGVNVRLEGL-------------------------------------------- 253 ::::::::: d1itua_ 309 IAELLRRNW-------TEAEVKGALADNLLRVFEAVEQASNLTQAPEEEPIPLDQLGGSC 361 d1thfd_ 254 -------- 254 d1itua_ 362 RTHYGYSS 369 TMalign alignment (TM-score: 0.55 Raw score:139.06) d1thfd_ 1 ---------M--LAKRII-ACLDVKDGRVVKG----SNFENLRDSGD--PVE--L-GKFY 39 : :::::: :::::: :::::: ::::::: : : :::: d1itua_ 1 DFFRDEAERIMRDSPVIDGHNDLPW-QLLDMFNNRL----QDERANLTT--LAGTHTNIP 53 d1thfd_ 40 SEI--GIDEL-VFLDITASV---EKRKTMLELVEKVAE--Q-----ID------------ 74 ::: ::::: ::::::::: ::::::::::::::: : :: d1itua_ 54 KLRAGFVGGQFWSVYTPCDTQNKDAVRRTLEQMDVVHRMCRMYPETFLYVTSSAGIRQAF 113 d1thfd_ 75 -----IPFTVGGGIH---DFE-TASELILRGADKVSINT------AAV------------ 107 :::::::::: ::: ::::::::::::::::: ::: d1itua_ 114 REGKVASLIGVEGGHSIDSSLGVLRALYQLGMRYLTLTHSCNTPWADNWLVDTGDSEPQS 173 d1thfd_ 108 -EN---PS-LITQIAQTFGSQA-------------------VVVAIDAKRVDGEFMVFTY 143 :: :: ::::::::::::: ::::::::: ::::::: d1itua_ 174 QGLSPFGQRVVKELNRLGVLIDLAHVSVATMKATLQLSRAPVIFSHSSAY--SVCASRR- 230 d1thfd_ 144 SGKKNTGILLRDWVVEVEKRGAGEILLTSI-D-RD--GTKSG-YDTEMIRFVRP-LT-TL 196 : :::::::::::::: ::::::: : :: ::::: ::::::::::: :: :: d1itua_ 231 -N------VPDDVLRLVKQTDS-LVMVNFYNNYISCTNKANLSQVADHLDHIKEVAGARA 282 d1thfd_ 197 PIIAS-------GG--AG---K-MEHFLEAF-L-A---GA--DAA--------------- 221 ::::: :: :: : :::::::: : : :: ::: d1itua_ 283 VGFGGDFDGVPRVPEGLEDVSKYPDLIAELLRRNWTEAEVKGALADNLLRVFEAVEQASN 342 d1thfd_ 222 ---------------------------LAASVFHFREIDVRELKEYLKKHGVNVRLEGL 253 d1itua_ 343 LTQAPEEEPIPLDQLGGSCRTHYGYSS-------------------------------- 369 HHsearch alignment (Probability: 0.06 E-value:0.05) d1thfd_ 36 GKFYSEIGIDELVFL---DITA----SVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFET 88 ::::::::::::::: :::: ::::::::::::::::::::::::: :::::: d1itua_ 52 IPKLRAGFVGGQFWSVYTPCDTQNKDAVRRTLEQMDVVHRMCRMYPETFLY---VTSSAG 108 d1thfd_ 89 ASELILRGADKVSINT---AAVE-NPSLITQIAQTFGSQAVVVAIDAKRVDGEFMV---- 140 :::::::::::::::: :::: :::::::: :::::: :::::::: :::::: d1itua_ 109 IRQAFREGKVASLIGVEGGHSIDSSLGVLRAL-YQLGMR--YLTLTHSC-NTPWADNWLV 164 d1thfd_ 141 -FTYSGKKNTGILL--RDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLP 197 ::::::::::::: ::::::::::: :::::::::::: ::::::::::: d1itua_ 165 DTGDSEPQSQGLSPFGQRVVKELNRLG----VLIDLAHVSVAT------MKATLQLSRAP 214 d1thfd_ 198 IIASGG-A-------GK--MEHFLEAFLAG-ADAALAASVFHFRE--IDVRELKEY 240 :::::: : :: ::::::::::: :::::::::::::: ::::::::: d1itua_ 215 VIFSHSSAYSVCASRRNVPDDVLRLVKQTDSLVMVNFYNNYISCTNKANLSQVADH 270