Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T515_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1q6oa_ | 3-keto-L-gulonate 6-phosphate decarboxylase | Ribulose-phoshate binding barrel | TIM beta/alpha-barrel | α/β |
| Hit | d1goia2 | Chitinase B, catalytic domain | (Trans)glycosidases | TIM beta/alpha-barrel | α/β |
Query <-- 1.541 --> IntermediateDALI alignment (Z-score: 13.1 Raw score:1148.30) query 1 mietpyylidkakltrnmeriahvreksGAKALLALKC---fATWSVFDLMRDYMDGTTS 57 :::::::::: :::::::::::::::::: d1q6oa_ 1 ----------------------------LPMLQVALDNqtmdSAYETTRLIAEEVDIIEV 32 query 58 S-------SLFEVRLGRERFG-KETHAYS-VAYG-DNEIDEVVS-HADKIIFNS---ISQ 103 : ::::::::::::: ::::::: :::: ::::::::: ::::::::: ::: d1q6oa_ 33 GtilcvgeGVRAVRDLKALYPhKIVLADAkIADAgKILSRMCFEaNADWVTVICcadINT 92 query 104 LERFADKAA--GIARGLRLNPQrlgeWDVPKVERVM-DRINGFMIHNNCE-NKDFgLFDR 159 ::::::::: ::::::::::: :::::::::: ::::::::::::: :::: :::: d1q6oa_ 93 AKGALDVAKefNGDVQIELTGY----WTWEQAQQWRdAGIGQVVYHRSRDaQAAG-VAWG 147 query 160 mlGEIEERFGALIARVDWVSLGGGIHFtgddypvdAFSARLRAFSdrygvQIYLEPGEAS 219 ::::::::::::::::::::::::: :::::::::: :::::::::: d1q6oa_ 148 --EADITAIKRLSDMGFKVTVTGGLAL--------EDLPLFKGIP-----IHVFIAGRSI 192 query 220 -ITKSttlevtvldtlynknlaivdssieahmldlliyretakvlpnegshsymicgksc 278 :::: d1q6oa_ 193 rDAAS------------------------------------------------------- 197 query 279 lagdvfgefrfaeelkvgdrisfqdaagytmvkknwfngvkmpaiaireldgsvrtvref 338 d1q6oa_ 198 ------------------------------------------------------pveaar 203 query 339 tyadyeqsls 348 d1q6oa_ 204 qfkrsiaelw 213 FAST alignment (Normalized score: 5.19 Raw score:1413.00) query 1 MIETPYYL----------IDKAKLTRNMERIAHVREKSGAKALLALKCFA----TWSVFD 46 ::::::::::: :::::: ::::: :::: :::::: d1q6oa_ 1 --------LPMLQVALDNQTMDSAYETTR---LIAEEV-DIIEV-GTIL-CVGEGVRAVR 46 query 47 LMRDYM-----DGTTSS-----SLFEVRLGRERF--GKETHAYSVAYGDNEIDEVVSHA- 93 ::::: ::::: :::::::::: ::::: :::::::::::::::: d1q6oa_ 47 DLKAL-YPHKIVLADA-KIADAGKILSRMCFE--ANADWVT-VICCADINTAKGALDV-A 100 query 94 ----DKIIF-----NSISQLERFADKAAGIARGLRLNPQRLGEW---------------D 129 ::::: ::::::::::: ::: :::::: : d1q6oa_ 101 KEFNGDVQIELTGYWTWEQAQQWRD--AGI-GQVVYH-------RSRDAQAAGVAWGEAD 150 query 130 VPKVERVMDRI--NGFMIHNNCENKDFGL---FDRMLGEIEERFGALIARVDWVSLGGGI 184 ::::::::: :::::: ::::: ::::: ::::::: d1q6oa_ 151 ITAIKRLSD--MGFKVTVT----------GGLALEDL----PLFKG--IPIHVFI----- 187 query 185 HFTGDD--------YPVDAFSARLRAFSDRYGVQIYLEPGEASITKSTTLEVTVLDTLYN 236 ::::::::::::::::: d1q6oa_ 188 ------AGRSIRDAASPVEAARQFKRSIAEL----------------------------- 212 query 237 KNLAIVDSSIEAHMLDLLIYRETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVG 296 d1q6oa_ 213 ------------------------------------------------------------ 213 query 297 DRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVREFTYADYEQSLS- 348 d1q6oa_ 213 ----------------------------------------------------W 213 TMalign alignment (TM-score: 0.43 Raw score:149.47) query 1 MIETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCF---ATWSVFDLMRDYMDGTTS 57 ::::::::::: :::::::::::::::::: d1q6oa_ 1 ----------------------------LPMLQVALDNQTMDSAYETTRLIAEEVDIIEV 32 query 58 -S--S----LFEVRLGRERFG-KETHAYSVAY-G-DNEIDEVVS-HADKIIFN--S-ISQ 103 : : :::::::::::: :::::::::: : ::::::::: :::::::: : ::: d1q6oa_ 33 GTILCVGEGVRAVRDLKALYPHKIVLADAKIADAGKILSRMCFEANADWVTVICCADINT 92 query 104 LERFADKAA--GIARGLRLNPQRLGEWDVPKVERVMD-RINGFMIHNNCE-NK--DFGLF 157 ::::::::: ::::::::: : :::::::::::: :::::::::::: :: ::: d1q6oa_ 93 AKGALDVAKEFNGDVQIELT---G-YWTWEQAQQWRDAGIGQVVYHRSRDAQAAG--VAW 146 query 158 DRMLGEIEERFGALIARVDWVSLGGGIHFTGDDYPVDAFSARLRAFSDRYGVQIYLEPGE 217 : ::::::::::::::::::::::::: : ::::::::: :: :::::: d1q6oa_ 147 -G--EADITAIKRLSDMGFKVTVTGGLAL-----E---DLPLFKGIP----IH-VFIAGR 190 query 218 ASITKST----------------TLEVTVLDTLYNKNLAIVDSSIEAHMLDLLIYRETAK 261 ::::::: d1q6oa_ 191 SIRDAASPVEAARQFKRSIAELW------------------------------------- 213 query 262 VLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMP 321 d1q6oa_ 214 ------------------------------------------------------------ 214 query 322 AIAIRELDGSVRTVREFTYADYEQSLS 348 d1q6oa_ 214 --------------------------- 214 HHsearch alignment (Probability: 0.38 E-value:0.02) query 16 RNMERIAHVREKSGAKALLALKCFATWSV-FDLMRDYMDGTTSSS--------LFEVRLG 66 :::::::::: ::::::::::::::::: ::::::::::::::: ::::::: d1q6oa_ 43 RAVRDLKALY--PHKIVLADAKIADAGKILSRMCFEANADWVTVICCADINTAKGALDVA 100 query 67 RERFGKETHAYSVAYGDNEIDEVVSHADKIIF-------------NSISQLERFADKAAG 113 :::::::::::::::::::::::::::::::: :::::::::::: :: d1q6oa_ 101 KEFNGDVQIELTGYWTWEQAQQWRDAGIGQVVYHRSRDAQAAGVAWGEADITAIKRL-SD 159 query 114 IARGLRLNPQRLGEWDVPKVERVMDRINGFMIHNNCENKDFGLFDRMLGEIEERFGAL 171 :::::::::::::::::::::::::::: ::::::::::::::::::::::::: d1q6oa_ 160 MGFKVTVTGGLALEDLPLFKGIPIHVFI-----AGRSIRDAASPVEAARQFKRSIAEL 212
Intermediate <-- 1.279 --> HitDALI alignment (Z-score: 12.7 Raw score:1345.10) d1q6oa_ 1 -LPMLQVALDNQT-------------mDSAYETTR-LIAEEVDIIEVGT----------- 34 :::::::::::: :::::::: ::::::::::::: d1goia2 1 tRKAVIGYYFIPTnqinnytetdtsvvPFPVSNITpAKAKQLTHINFSFldinsnlecaw 60 d1q6oa_ 35 --ilcvgEGVRAVRDLKaLYPH----KIVLADAK------------------------ia 64 :::::::::: :::: :::::::: d1goia2 61 dpatndaKARDVVNRLT-ALKAhnpsLRIMFSIGgwyysndlgvshanyvnavktpasra 119 d1q6oa_ 65 dAGKILSRMCFEANADWVTV-ICCA-------DINTAKGALDVAKEFN---------GDV 107 ::::::::::::::::::: :::: :::::::::::::::: ::: d1goia2 120 kFAQSCVRIMKDYGFDGVNIdWEYPqaaevdgFIAALQEIRTLLNQQTitdgrqalpYQL 179 d1q6oa_ 108 QIELT---GYWT--WEQAQQWRdAGIGQVVYHRSRdAQAA-----GVAWGE--------- 148 ::::: :::: :::::::: :::::::::::: :::: :::::: d1goia2 180 TIAGAggaFFLSryYSKLAQIV-APLDYINLMTYD-LAGPwekvtNHQAALfgdaagptf 237 d1q6oa_ 149 --------------------------ADITAIKRLS--DMGF--KVTVTGG----lALED 174 :::::::::: :::: ::::::: :::: d1goia2 238 ynalreanlgwsweeltrafpspfslTVDAAVQQHLmmEGVPsaKIVMGVPfddaeSFKY 297 d1q6oa_ 175 -LPLFKGIPIHVFIAGRsIRDAASPVEAARQFKRSIAE--------------------lw 213 :::::::::::::::: :::::::::::::::::::: d1goia2 298 kAKYIKQQQLGGVMFWH-LGQDNRNGDLLAALDRYFNAadyddsqldmgtglrytgvgpg 356 FAST alignment (Normalized score: 7.42 Raw score:2044.00) d1q6oa_ 1 L--PMLQVALDN-----------------QTMDSAYET-TRLIAEEVDIIEVGTILCVG- 39 ::::::::: ::::: ::::::::::::: d1goia2 1 -TRKAVIGYYFIPTNQINNYTETDTSVVPFPVSN----ITPAKAKQLTHINF-------S 48 d1q6oa_ 40 -------------------EGVRAVRDLKA---LYPHKIVLADAKIAD------------ 65 ::::::::::: :::::::::: d1goia2 49 FLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRIMFS-----IGGWYYSNDLGV 103 d1q6oa_ 66 -------------AGKILSRMCF----EANADWVTVICCA------------DINTAKGA 96 :::::::::: ::::::::: :::::::: d1goia2 104 SHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVNI----DWEYPQAAEVDGFIAALQEI 159 d1q6oa_ 97 LDVAKEF----------NGDVQIELTGYW----------TWEQAQQWRDAGIGQVVYHRS 136 :::::: ::::::: :::::::::: ::::::::: d1goia2 160 RTLLNQ-QTITDGRQALPYQLTIA-----GAGGAFFLSRYYSKLAQIVA-PLDYINLMT- 211 d1q6oa_ 137 RDAQAAGVAWGE------------------------------------------------ 148 d1goia2 212 ------------YDLAGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPS 259 d1q6oa_ 149 ----ADITAIKRLSDMGF------KVTVTGG----LALE----DLPLFKGIPIHVFIAGR 190 :::::::::::: :::: :::: :::::::::::::: d1goia2 260 PFSLTVDAAVQQHLMM--EGVPSAKIVM---GVPFDDAESFKYKAKYIKQQQLGGVM--- 311 d1q6oa_ 191 --SIRDAASP----VEAARQFKRSIAELW------------------------ 213 :::: ::::::::::: d1goia2 312 FWHLGQ----DNRNGDLLAALDRYF----NAADYDDSQLDMGTGLRYTGVGPG 356 TMalign alignment (TM-score: 0.77 Raw score:163.30) d1q6oa_ 1 -LPMLQVALDNQ--TM--D---------SAYETTRL-IAEEVDIIEVGTIL--------C 37 ::::::::::: :: : :::::::: :::::::::::::: : d1goia2 1 TRKAVIGYYFIPTNQINNYTETDTSVVPFPVSNITPAKAKQLTHINFSFLDINSNLECAW 60 d1q6oa_ 38 V-GE-G--VR-AVRDLKALYP--H-KIVLADAK----I---------A--D--------- 65 : :: : :: :::::::::: : :::::::: : : : d1goia2 61 DPATNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAK 120 d1q6oa_ 66 AGKILSRMCFEANADWVTV-I-CC----A-D-INTAKGALDVAKEFN---------GDVQ 108 ::::::::::::::::::: : :: : : ::::::::::::::: :::: d1goia2 121 FAQSCVRIMKDYGFDGVNIDWEYPQAAEVDGFIAALQEIRTLLNQQTITDGRQALPYQLT 180 d1q6oa_ 109 IELT----GY-WTWEQAQQWRDAGIGQVVYHRSRDAQAA-----G-VAW----------- 146 :::: :: :::::::::: :::::::::::: :::: : ::: d1goia2 181 IAGAGGAFFLSRYYSKLAQIV-APLDYINLMTYD-LAGPWEKVTNHQAALFGDAAGPTFY 238 d1q6oa_ 147 -------------------------G-EADITAIKRLSDMG-FKVTVTGGLA-L-EDLPL 177 : :::::::::::::: :::::::::: : ::::: d1goia2 239 NALREANLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPFDDAESFKYK 298 d1q6oa_ 178 --FK-GIPIHVFIAGRSIRDAASPVEAARQFKRSIA----ELW---------------- 213 :: ::::::::::: ::::::::::::::::::: ::: d1goia2 299 AKYIKQQQLGGVMFWH-LGQDNRNGDLLAALDRYFNAADYDDSQLDMGTGLRYTGVGPG 356 HHsearch alignment (Probability: 0.03 E-value:0.17) d1q6oa_ 43 RAVRDLKALYPHKIVLADA--------------KIADAG----------KILSRMCFEAN 78 ::::::::::::::::::: :::::: ::::::::::: d1goia2 74 NRLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYG 133 d1q6oa_ 79 ADWVTVICCA 88 :::::::::: d1goia2 134 FDGVNIDWEY 143