Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T515_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1q6oa_ | 3-keto-L-gulonate 6-phosphate decarboxylase | Ribulose-phoshate binding barrel | TIM beta/alpha-barrel | α/β |
| Hit | d1bqca_ | Beta-mannanase | (Trans)glycosidases | TIM beta/alpha-barrel | α/β |
Query <-- 1.541 --> IntermediateDALI alignment (Z-score: 13.1 Raw score:1148.30) query 1 mietpyylidkakltrnmeriahvreksGAKALLALKC---fATWSVFDLMRDYMDGTTS 57 :::::::::: :::::::::::::::::: d1q6oa_ 1 ----------------------------LPMLQVALDNqtmdSAYETTRLIAEEVDIIEV 32 query 58 S-------SLFEVRLGRERFG-KETHAYS-VAYG-DNEIDEVVS-HADKIIFNS---ISQ 103 : ::::::::::::: ::::::: :::: ::::::::: ::::::::: ::: d1q6oa_ 33 GtilcvgeGVRAVRDLKALYPhKIVLADAkIADAgKILSRMCFEaNADWVTVICcadINT 92 query 104 LERFADKAA--GIARGLRLNPQrlgeWDVPKVERVM-DRINGFMIHNNCE-NKDFgLFDR 159 ::::::::: ::::::::::: :::::::::: ::::::::::::: :::: :::: d1q6oa_ 93 AKGALDVAKefNGDVQIELTGY----WTWEQAQQWRdAGIGQVVYHRSRDaQAAG-VAWG 147 query 160 mlGEIEERFGALIARVDWVSLGGGIHFtgddypvdAFSARLRAFSdrygvQIYLEPGEAS 219 ::::::::::::::::::::::::: :::::::::: :::::::::: d1q6oa_ 148 --EADITAIKRLSDMGFKVTVTGGLAL--------EDLPLFKGIP-----IHVFIAGRSI 192 query 220 -ITKSttlevtvldtlynknlaivdssieahmldlliyretakvlpnegshsymicgksc 278 :::: d1q6oa_ 193 rDAAS------------------------------------------------------- 197 query 279 lagdvfgefrfaeelkvgdrisfqdaagytmvkknwfngvkmpaiaireldgsvrtvref 338 d1q6oa_ 198 ------------------------------------------------------pveaar 203 query 339 tyadyeqsls 348 d1q6oa_ 204 qfkrsiaelw 213 FAST alignment (Normalized score: 5.19 Raw score:1413.00) query 1 MIETPYYL----------IDKAKLTRNMERIAHVREKSGAKALLALKCFA----TWSVFD 46 ::::::::::: :::::: ::::: :::: :::::: d1q6oa_ 1 --------LPMLQVALDNQTMDSAYETTR---LIAEEV-DIIEV-GTIL-CVGEGVRAVR 46 query 47 LMRDYM-----DGTTSS-----SLFEVRLGRERF--GKETHAYSVAYGDNEIDEVVSHA- 93 ::::: ::::: :::::::::: ::::: :::::::::::::::: d1q6oa_ 47 DLKAL-YPHKIVLADA-KIADAGKILSRMCFE--ANADWVT-VICCADINTAKGALDV-A 100 query 94 ----DKIIF-----NSISQLERFADKAAGIARGLRLNPQRLGEW---------------D 129 ::::: ::::::::::: ::: :::::: : d1q6oa_ 101 KEFNGDVQIELTGYWTWEQAQQWRD--AGI-GQVVYH-------RSRDAQAAGVAWGEAD 150 query 130 VPKVERVMDRI--NGFMIHNNCENKDFGL---FDRMLGEIEERFGALIARVDWVSLGGGI 184 ::::::::: :::::: ::::: ::::: ::::::: d1q6oa_ 151 ITAIKRLSD--MGFKVTVT----------GGLALEDL----PLFKG--IPIHVFI----- 187 query 185 HFTGDD--------YPVDAFSARLRAFSDRYGVQIYLEPGEASITKSTTLEVTVLDTLYN 236 ::::::::::::::::: d1q6oa_ 188 ------AGRSIRDAASPVEAARQFKRSIAEL----------------------------- 212 query 237 KNLAIVDSSIEAHMLDLLIYRETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVG 296 d1q6oa_ 213 ------------------------------------------------------------ 213 query 297 DRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVREFTYADYEQSLS- 348 d1q6oa_ 213 ----------------------------------------------------W 213 TMalign alignment (TM-score: 0.43 Raw score:149.47) query 1 MIETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCF---ATWSVFDLMRDYMDGTTS 57 ::::::::::: :::::::::::::::::: d1q6oa_ 1 ----------------------------LPMLQVALDNQTMDSAYETTRLIAEEVDIIEV 32 query 58 -S--S----LFEVRLGRERFG-KETHAYSVAY-G-DNEIDEVVS-HADKIIFN--S-ISQ 103 : : :::::::::::: :::::::::: : ::::::::: :::::::: : ::: d1q6oa_ 33 GTILCVGEGVRAVRDLKALYPHKIVLADAKIADAGKILSRMCFEANADWVTVICCADINT 92 query 104 LERFADKAA--GIARGLRLNPQRLGEWDVPKVERVMD-RINGFMIHNNCE-NK--DFGLF 157 ::::::::: ::::::::: : :::::::::::: :::::::::::: :: ::: d1q6oa_ 93 AKGALDVAKEFNGDVQIELT---G-YWTWEQAQQWRDAGIGQVVYHRSRDAQAAG--VAW 146 query 158 DRMLGEIEERFGALIARVDWVSLGGGIHFTGDDYPVDAFSARLRAFSDRYGVQIYLEPGE 217 : ::::::::::::::::::::::::: : ::::::::: :: :::::: d1q6oa_ 147 -G--EADITAIKRLSDMGFKVTVTGGLAL-----E---DLPLFKGIP----IH-VFIAGR 190 query 218 ASITKST----------------TLEVTVLDTLYNKNLAIVDSSIEAHMLDLLIYRETAK 261 ::::::: d1q6oa_ 191 SIRDAASPVEAARQFKRSIAELW------------------------------------- 213 query 262 VLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMP 321 d1q6oa_ 214 ------------------------------------------------------------ 214 query 322 AIAIRELDGSVRTVREFTYADYEQSLS 348 d1q6oa_ 214 --------------------------- 214 HHsearch alignment (Probability: 0.38 E-value:0.02) query 16 RNMERIAHVREKSGAKALLALKCFATWSV-FDLMRDYMDGTTSSS--------LFEVRLG 66 :::::::::: ::::::::::::::::: ::::::::::::::: ::::::: d1q6oa_ 43 RAVRDLKALY--PHKIVLADAKIADAGKILSRMCFEANADWVTVICCADINTAKGALDVA 100 query 67 RERFGKETHAYSVAYGDNEIDEVVSHADKIIF-------------NSISQLERFADKAAG 113 :::::::::::::::::::::::::::::::: :::::::::::: :: d1q6oa_ 101 KEFNGDVQIELTGYWTWEQAQQWRDAGIGQVVYHRSRDAQAAGVAWGEADITAIKRL-SD 159 query 114 IARGLRLNPQRLGEWDVPKVERVMDRINGFMIHNNCENKDFGLFDRMLGEIEERFGAL 171 :::::::::::::::::::::::::::: ::::::::::::::::::::::::: d1q6oa_ 160 MGFKVTVTGGLALEDLPLFKGIPIHVFI-----AGRSIRDAASPVEAARQFKRSIAEL 212
Intermediate <-- 1.417 --> HitDALI alignment (Z-score: 11.7 Raw score:1183.20) d1q6oa_ 1 ------------------LPMLQVALDN-QTMDSaYETTRLIAE-EVDIIEVGT--ilcV 38 :::::::::: ::::: ::::::::: ::::::::: : d1bqca_ 1 atglhvkngrlyeangqeFIIRGVSHPHnWYPQH-TQAFADIKShGANTVRVVLsngvrW 59 d1q6oa_ 39 GEG-VRAVRDLKALYP--HKIVLADAK------------iADAGKILSRMCFEAN----- 78 ::: :::::::::::: ::::::::: ::::::::::::::: d1bqca_ 60 SKNgPSDVANVISLCKqnRLICMLEVHdttgygeqsgastLDQAVDYWIELKSVLqgeed 119 d1q6oa_ 79 aDWVTV-ICCA---------DINTAKGALDVAK--EFNGDVQIEL---TGYWT---WEQA 120 ::::: :::: ::::::::::::: :::::::::: ::::: :::: d1bqca_ 120 yVLINIgNEPYgndsatvaaWATDTSAAIQRLRaaGFEHTLVVDApnwGQDWTntmRNNA 179 d1q6oa_ 121 QQWRDAG---iGQVVYHRSrdaqaagvAWGEADITAIKRLSDMGFKVTV-TGGL------ 170 ::::::: :::::::: :::::::::::::::::::::: :::: d1bqca_ 180 DQVYASDptgnTVFSIHMY-----gvySQASTITSYLEHFVNAGLPLIIgEFGHdhsdgn 234 d1q6oa_ 171 -aLEDL-PLFKGIPIhVFIAGR----------SIRDA----ASPVEAARQFK-RSIA--- 210 :::: :::::::: :::::: ::::: ::::::::::: :::: d1bqca_ 235 pdEDTImAEAERLKL-GYIGWSwsgngggveyLDMVYnfdgDNLSPWGERIFyGPNGias 293 d1q6oa_ 211 ------elw 213 d1bqca_ 294 takeavifg 302 FAST alignment (Normalized score: 6.36 Raw score:1613.00) d1q6oa_ 1 L-------------------PMLQVALDNQ------TMDSAYETTRLIAE-EVDIIEVGT 34 :::::::: :::::::::: ::::::: d1bqca_ 1 -ATGLHVKNGRLYEANGQEFIIRGVSHP--HNWYPQHTQAFADIKS----HGANTVRV-- 51 d1q6oa_ 35 ILCVGEG----------------VRAVRDLKALYPHKIVLADAKIAD------------- 65 ::::::::: ::::::::: d1bqca_ 52 -------VLSNGVRWSKNGPSDVANVISLCKQ--NRLICMLEV----HDTTGYGEQSGAS 98 d1q6oa_ 66 AGKILSRMCFEANA-----------DWVTVICCA---------------DINTAKGALDV 99 ::::::::::: :::: ::::::::::: d1bqca_ 99 TLDQAVDYWIE---LKSVLQGEEDYVLIN-----IGNEPYGNDSATVAAWATDTSAAIQR 150 d1q6oa_ 100 AKE--FNGDVQIELTGYW----------TWEQAQQWRDAGI------GQVVYHRSRDAQA 141 ::: ::::::::: :::::::::: :::::: :::: d1bqca_ 151 LRAAGFEHTLVVDA----PNWGQDWTNTMRNNADQVYA---SDPTGNTVFSIH-MYGV-- 200 d1q6oa_ 142 AGVAW---GEADITAIKRLSDMGFKVTVTGGLAL--------------EDLPLFKGIPIH 184 ::::::::::::::::::::: :::::::::: : d1bqca_ 201 -----YSQASTITSYLEHFVNAGLPLIIG-----EFGHDHSDGNPDEDTIMAEAERLK-L 249 d1q6oa_ 185 VFIAGRSIRDAASP-------------------------VEAARQFKR---SIAELW--- 213 ::: ::::::::: :::: d1bqca_ 250 GYI-----------GWSWSGNGGGVEYLDMVYNFDGDNLSPWGERIFYGPNGIAS--TAK 296 d1q6oa_ 214 ------ 214 d1bqca_ 297 EAVIFG 302 TMalign alignment (TM-score: 0.73 Raw score:155.35) d1q6oa_ 1 ------------------LPMLQVALDN-QTMDSAYETTRLIAE-EVDIIEVGTILC--- 37 :::::::::: ::::: ::::::::: :::::::: :: d1bqca_ 1 ATGLHVKNGRLYEANGQEFIIRGVSHPHNWYPQH-TQAFADIKSHGANTVRVV--LSNGV 57 d1q6oa_ 38 VGEGVR--AVRDLKALYP--HKIVLADAK-I----------ADA-GKILSRMCFEAN--- 78 :::::: :::::::::: ::::::::: : ::: :::::::::::: d1bqca_ 58 RWSKNGPSDVANVISLCKQNRLICMLEVHDTTGYGEQSGASTLDQAVDYWIELKSVLQGE 117 d1q6oa_ 79 ---ADWVTV--IC------C--ADINTAKGALDVAK-EFNGDVQIEL---TGY--WT-WE 118 :::::: :: : :::::::::::::: :::::::::: ::: :: :: d1bqca_ 118 EDYVLINIGNEPYGNDSATVAAWATDTSAAIQRLRAAGFEHTLVVDAPNWGQDWTNTMRN 177 d1q6oa_ 119 QAQQWRDAG--I-GQVVYHRSRDAQAAGVAWGEADITAIKRLSDMGFKVTV-TGGLA--- 171 ::::::::: : :::::::: :: ::::::::::::::::::::::: ::::: d1bqca_ 178 NADQVYASDPTGNTVFSIHMY--GV---YSQASTITSYLEHFVNAGLPLIIGEFGHDHSD 232 d1q6oa_ 172 ----LED-LPLFKGIPIHVFIAGRSI---------RDA------ASP--VEAARQ---FK 206 ::: ::::::::: :::::::: ::: ::: :::::: :: d1bqca_ 233 GNPDEDTIMAEAERLKL-GYIGWSWSGNGGGVEYLDMVYNFDGDNLSPWGERIFYGPNGI 291 d1q6oa_ 207 RSIA-------ELW 213 :::: d1bqca_ 292 ASTAKEAVIFG--- 302 HHsearch alignment (Probability: 0.35 E-value:0.00) d1q6oa_ 69 ILSRMCFEANADWVTV-------ICCADINTAKGALDVAKEFNGDVQIELTGYW 115 :::::::::::::::: ::::::::::::::::::::::::::::::: d1bqca_ 36 QAFADIKSHGANTVRVVLSNGVRWSKNGPSDVANVISLCKQNRLICMLEVHDTT 89