Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T515_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1q6oa_ | 3-keto-L-gulonate 6-phosphate decarboxylase | Ribulose-phoshate binding barrel | TIM beta/alpha-barrel | α/β |
| Hit | d1ec7a1 | D-glucarate dehydratase | Enolase C-terminal domain-like | TIM beta/alpha-barrel | α/β |
Query <-- 1.541 --> IntermediateDALI alignment (Z-score: 13.1 Raw score:1148.30) query 1 mietpyylidkakltrnmeriahvreksGAKALLALKC---fATWSVFDLMRDYMDGTTS 57 :::::::::: :::::::::::::::::: d1q6oa_ 1 ----------------------------LPMLQVALDNqtmdSAYETTRLIAEEVDIIEV 32 query 58 S-------SLFEVRLGRERFG-KETHAYS-VAYG-DNEIDEVVS-HADKIIFNS---ISQ 103 : ::::::::::::: ::::::: :::: ::::::::: ::::::::: ::: d1q6oa_ 33 GtilcvgeGVRAVRDLKALYPhKIVLADAkIADAgKILSRMCFEaNADWVTVICcadINT 92 query 104 LERFADKAA--GIARGLRLNPQrlgeWDVPKVERVM-DRINGFMIHNNCE-NKDFgLFDR 159 ::::::::: ::::::::::: :::::::::: ::::::::::::: :::: :::: d1q6oa_ 93 AKGALDVAKefNGDVQIELTGY----WTWEQAQQWRdAGIGQVVYHRSRDaQAAG-VAWG 147 query 160 mlGEIEERFGALIARVDWVSLGGGIHFtgddypvdAFSARLRAFSdrygvQIYLEPGEAS 219 ::::::::::::::::::::::::: :::::::::: :::::::::: d1q6oa_ 148 --EADITAIKRLSDMGFKVTVTGGLAL--------EDLPLFKGIP-----IHVFIAGRSI 192 query 220 -ITKSttlevtvldtlynknlaivdssieahmldlliyretakvlpnegshsymicgksc 278 :::: d1q6oa_ 193 rDAAS------------------------------------------------------- 197 query 279 lagdvfgefrfaeelkvgdrisfqdaagytmvkknwfngvkmpaiaireldgsvrtvref 338 d1q6oa_ 198 ------------------------------------------------------pveaar 203 query 339 tyadyeqsls 348 d1q6oa_ 204 qfkrsiaelw 213 FAST alignment (Normalized score: 5.19 Raw score:1413.00) query 1 MIETPYYL----------IDKAKLTRNMERIAHVREKSGAKALLALKCFA----TWSVFD 46 ::::::::::: :::::: ::::: :::: :::::: d1q6oa_ 1 --------LPMLQVALDNQTMDSAYETTR---LIAEEV-DIIEV-GTIL-CVGEGVRAVR 46 query 47 LMRDYM-----DGTTSS-----SLFEVRLGRERF--GKETHAYSVAYGDNEIDEVVSHA- 93 ::::: ::::: :::::::::: ::::: :::::::::::::::: d1q6oa_ 47 DLKAL-YPHKIVLADA-KIADAGKILSRMCFE--ANADWVT-VICCADINTAKGALDV-A 100 query 94 ----DKIIF-----NSISQLERFADKAAGIARGLRLNPQRLGEW---------------D 129 ::::: ::::::::::: ::: :::::: : d1q6oa_ 101 KEFNGDVQIELTGYWTWEQAQQWRD--AGI-GQVVYH-------RSRDAQAAGVAWGEAD 150 query 130 VPKVERVMDRI--NGFMIHNNCENKDFGL---FDRMLGEIEERFGALIARVDWVSLGGGI 184 ::::::::: :::::: ::::: ::::: ::::::: d1q6oa_ 151 ITAIKRLSD--MGFKVTVT----------GGLALEDL----PLFKG--IPIHVFI----- 187 query 185 HFTGDD--------YPVDAFSARLRAFSDRYGVQIYLEPGEASITKSTTLEVTVLDTLYN 236 ::::::::::::::::: d1q6oa_ 188 ------AGRSIRDAASPVEAARQFKRSIAEL----------------------------- 212 query 237 KNLAIVDSSIEAHMLDLLIYRETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVG 296 d1q6oa_ 213 ------------------------------------------------------------ 213 query 297 DRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVREFTYADYEQSLS- 348 d1q6oa_ 213 ----------------------------------------------------W 213 TMalign alignment (TM-score: 0.43 Raw score:149.47) query 1 MIETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCF---ATWSVFDLMRDYMDGTTS 57 ::::::::::: :::::::::::::::::: d1q6oa_ 1 ----------------------------LPMLQVALDNQTMDSAYETTRLIAEEVDIIEV 32 query 58 -S--S----LFEVRLGRERFG-KETHAYSVAY-G-DNEIDEVVS-HADKIIFN--S-ISQ 103 : : :::::::::::: :::::::::: : ::::::::: :::::::: : ::: d1q6oa_ 33 GTILCVGEGVRAVRDLKALYPHKIVLADAKIADAGKILSRMCFEANADWVTVICCADINT 92 query 104 LERFADKAA--GIARGLRLNPQRLGEWDVPKVERVMD-RINGFMIHNNCE-NK--DFGLF 157 ::::::::: ::::::::: : :::::::::::: :::::::::::: :: ::: d1q6oa_ 93 AKGALDVAKEFNGDVQIELT---G-YWTWEQAQQWRDAGIGQVVYHRSRDAQAAG--VAW 146 query 158 DRMLGEIEERFGALIARVDWVSLGGGIHFTGDDYPVDAFSARLRAFSDRYGVQIYLEPGE 217 : ::::::::::::::::::::::::: : ::::::::: :: :::::: d1q6oa_ 147 -G--EADITAIKRLSDMGFKVTVTGGLAL-----E---DLPLFKGIP----IH-VFIAGR 190 query 218 ASITKST----------------TLEVTVLDTLYNKNLAIVDSSIEAHMLDLLIYRETAK 261 ::::::: d1q6oa_ 191 SIRDAASPVEAARQFKRSIAELW------------------------------------- 213 query 262 VLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMP 321 d1q6oa_ 214 ------------------------------------------------------------ 214 query 322 AIAIRELDGSVRTVREFTYADYEQSLS 348 d1q6oa_ 214 --------------------------- 214 HHsearch alignment (Probability: 0.38 E-value:0.02) query 16 RNMERIAHVREKSGAKALLALKCFATWSV-FDLMRDYMDGTTSSS--------LFEVRLG 66 :::::::::: ::::::::::::::::: ::::::::::::::: ::::::: d1q6oa_ 43 RAVRDLKALY--PHKIVLADAKIADAGKILSRMCFEANADWVTVICCADINTAKGALDVA 100 query 67 RERFGKETHAYSVAYGDNEIDEVVSHADKIIF-------------NSISQLERFADKAAG 113 :::::::::::::::::::::::::::::::: :::::::::::: :: d1q6oa_ 101 KEFNGDVQIELTGYWTWEQAQQWRDAGIGQVVYHRSRDAQAAGVAWGEADITAIKRL-SD 159 query 114 IARGLRLNPQRLGEWDVPKVERVMDRINGFMIHNNCENKDFGLFDRMLGEIEERFGAL 171 :::::::::::::::::::::::::::: ::::::::::::::::::::::::: d1q6oa_ 160 MGFKVTVTGGLALEDLPLFKGIPIHVFI-----AGRSIRDAASPVEAARQFKRSIAEL 212
Intermediate <-- 1.441 --> HitDALI alignment (Z-score: 13.3 Raw score:1262.70) d1q6oa_ 1 ------LPMLQVALDN-----------------------------QTMDSAYETTRLIAE 25 :::::::::: ::::::::::::::: d1ec7a1 1 dgqqrsEVEMLGYLFFvgnrkatplpyqsqpddscdwyrlrheeaMTPDAVVRLAEAAYE 60 d1q6oa_ 26 --EVDIIEVGTilCVGE---GVRAVRDLKALYPHKIVLADAKIADAGKILSRMCFEA--N 78 ::::::::: :::: ::::::::::::::::::::::::::::::::::::: : d1ec7a1 61 kyGFNDFKLKG--GVLAgeeEAESIVALAQRFPQARITLDPNGAWSLNEAIKIGKYLkgS 118 d1q6oa_ 79 ADWVTV-----iccADINTAKGALDVAKefnGDVQIELtgyWTWEQAQQWRDAG-IGQVV 132 :::::: :::::::::::::: ::::::: ::::::::::::: ::::: d1ec7a1 119 LAYAEDpcgaeqgfSGREVMAEFRRATG---LPTATNM-iaTDWRQMGHTLSLQsVDIPL 174 d1q6oa_ 133 YHRSrdaqaagvaWGEADITAIKRLSDMGFKVTVTGG----lALED-LPLFKGI--PIHV 185 :::: :::::::::::::::::::::::: :::: ::::::: :::: d1ec7a1 175 ADPH-------fwTMQGSVRVAQMCHEFGLTWGSHSNnhfdiSLAMfTHVAAAApgKITA 227 d1q6oa_ 186 FIAGrSIRDAAS--pveaaRQFK-rsIAEL------------------------------ 212 :::: ::::::: :::: :::: d1ec7a1 228 IDTH-WIWQEGNqrltkepFEIKgglVQVPekpglgveidmdqvmkahelyqkhglgard 286 d1q6oa_ 213 ----------------------w 213 d1ec7a1 287 damgmqylipgwtfdnkrpcmvr 309 FAST alignment (Normalized score: 8.47 Raw score:2172.00) d1q6oa_ 1 ------LPMLQVALD------------------------------NQTMDSAYETTRLIA 24 :::::::: ::::::::::::::: d1ec7a1 1 DGQQRSEVEMLGYL-FFVGNRKATPLPYQSQPDDSCDWYRLRHEEAMTPDAVVRLAEAAY 59 d1q6oa_ 25 E--EVDIIEVGTILCVGE----GVRAVRDLKALYPHKIVLADAKIADA----GKILSRMC 74 : ::::::: ::::: ::::::::::::::::::::: :::::::: d1ec7a1 60 EKYGFNDFKL---KGGVLAGEEEAESIVALAQRFPQARITLDP-----NGAWSLNEAIKI 111 d1q6oa_ 75 FEA----NADWVTVICCADI----------NTAKGALDVAKEFNGDVQIELTGY-----W 115 :: ::::: :::::::::::::::::: : d1ec7a1 112 GK-YLKGSLAYA--------EDPCGAEQGFSGREVMAEFRRATGLPTA------TNMIAT 156 d1q6oa_ 116 TWEQAQQWRDA-GIGQVVYHRSRDAQAAGVAW-----GEADITAIKRLSDMGFKVTV-TG 168 ::::::::::: :::::::: :::::::::::::::::::: :: d1ec7a1 157 DWRQMGHTLSLQSVDIPLAD------------PHFWTMQGSVRVAQMCHEFGLTWGSHSN 204 d1q6oa_ 169 GLALE----DLPLFKG--IPIHVFIAGRSIRDAASPVEAARQFKRSIAELW--------- 213 ::::: ::::::: :::::::: ::::: d1ec7a1 205 NHFDISLAMFTHVAAAAPGKITAIDT-HWIWQ-------------------EGNQRLTKE 244 d1q6oa_ 214 ------------------------------------------------------------ 214 d1ec7a1 245 PFEIKGGLVQVPEKPGLGVEIDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKR 304 d1q6oa_ 214 ----- 214 d1ec7a1 305 PCMVR 309 TMalign alignment (TM-score: 0.71 Raw score:152.02) d1q6oa_ 1 ----L--PMLQVALDNQ----------------------------TM-DSAYETTRLIAE 25 : :::::::::: :: :::::::::::: d1ec7a1 1 DGQQRSEVEMLGYLFFVGNRKATPLPYQSQPDDSCDWYRLRHEEAMTPDAVVRLAEAAYE 60 d1q6oa_ 26 --EVDIIEVGTILCVG---EGVRAVRDLKALYPHKIVLADAKIADAGKILSRMCFEA--N 78 ::::::::: ::: :::::::::::::::::::::::::::::::::::::: : d1ec7a1 61 KYGFNDFKLKG--GVLAGEEEAESIVALAQRFPQARITLDPNGAWSLNEAIKIGKYLKGS 118 d1q6oa_ 79 ADWVTVICCA----D-INTAKGALDVAKEFNGDVQIELTGYWTWEQAQQWRDAG-IGQVV 132 :::::::::: : :::::::::::: :::::::: :::::::::::::: ::::: d1ec7a1 119 LAYAEDPCGAEQGFSGREVMAEFRRATG---LPTATNMI-ATDWRQMGHTLSLQSVDIPL 174 d1q6oa_ 133 YHRSRDAQAAGVAWGEADITAIKRLSDMG----FKVTVTG-GL-A--LEDLPLF-KGIP- 182 ::: :: ::::::::::::: ::::::: :: : ::::::: :::: d1ec7a1 175 ADP----------HF-WTMQGSVRVAQMCHEFGLTWGSHSNNHFDISLAMFTHVAAAAPG 223 d1q6oa_ 183 -IHVFIAGRSIRDAAS-------PVEAARQFKRSIAEL---------------------- 212 ::::::: ::::::: :::::::::: :: d1ec7a1 224 KITAIDTH-WIWQEGNQRLTKEP--FEIKGGLVQV-PEKPGLGVEIDMDQVMKAHELYQK 279 d1q6oa_ 213 ------------------------------W 213 d1ec7a1 280 HGLGARDDAMGMQYLIPGWTFDNKRPCMVR- 309 HHsearch alignment (Probability: 0.77 E-value:0.00) d1q6oa_ 12 TMDSAYETTRLIAE--EVDIIEVGT-ILCVGEGVRAVRDLKALYPHKIVLADAKIADAGK 68 :::::::::::::: ::::::::: :::::::::::::::::::::::::::::::::: d1ec7a1 47 TPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAWSLN 106 d1q6oa_ 69 I 69 : d1ec7a1 107 E 107