Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T515_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1q6oa_ | 3-keto-L-gulonate 6-phosphate decarboxylase | Ribulose-phoshate binding barrel | TIM beta/alpha-barrel | α/β |
| Hit | d1jnda1 | Imaginal disc growth factor-2 | (Trans)glycosidases | TIM beta/alpha-barrel | α/β |
Query <-- 1.541 --> IntermediateDALI alignment (Z-score: 13.1 Raw score:1148.30) query 1 mietpyylidkakltrnmeriahvreksGAKALLALKC---fATWSVFDLMRDYMDGTTS 57 :::::::::: :::::::::::::::::: d1q6oa_ 1 ----------------------------LPMLQVALDNqtmdSAYETTRLIAEEVDIIEV 32 query 58 S-------SLFEVRLGRERFG-KETHAYS-VAYG-DNEIDEVVS-HADKIIFNS---ISQ 103 : ::::::::::::: ::::::: :::: ::::::::: ::::::::: ::: d1q6oa_ 33 GtilcvgeGVRAVRDLKALYPhKIVLADAkIADAgKILSRMCFEaNADWVTVICcadINT 92 query 104 LERFADKAA--GIARGLRLNPQrlgeWDVPKVERVM-DRINGFMIHNNCE-NKDFgLFDR 159 ::::::::: ::::::::::: :::::::::: ::::::::::::: :::: :::: d1q6oa_ 93 AKGALDVAKefNGDVQIELTGY----WTWEQAQQWRdAGIGQVVYHRSRDaQAAG-VAWG 147 query 160 mlGEIEERFGALIARVDWVSLGGGIHFtgddypvdAFSARLRAFSdrygvQIYLEPGEAS 219 ::::::::::::::::::::::::: :::::::::: :::::::::: d1q6oa_ 148 --EADITAIKRLSDMGFKVTVTGGLAL--------EDLPLFKGIP-----IHVFIAGRSI 192 query 220 -ITKSttlevtvldtlynknlaivdssieahmldlliyretakvlpnegshsymicgksc 278 :::: d1q6oa_ 193 rDAAS------------------------------------------------------- 197 query 279 lagdvfgefrfaeelkvgdrisfqdaagytmvkknwfngvkmpaiaireldgsvrtvref 338 d1q6oa_ 198 ------------------------------------------------------pveaar 203 query 339 tyadyeqsls 348 d1q6oa_ 204 qfkrsiaelw 213 FAST alignment (Normalized score: 5.19 Raw score:1413.00) query 1 MIETPYYL----------IDKAKLTRNMERIAHVREKSGAKALLALKCFA----TWSVFD 46 ::::::::::: :::::: ::::: :::: :::::: d1q6oa_ 1 --------LPMLQVALDNQTMDSAYETTR---LIAEEV-DIIEV-GTIL-CVGEGVRAVR 46 query 47 LMRDYM-----DGTTSS-----SLFEVRLGRERF--GKETHAYSVAYGDNEIDEVVSHA- 93 ::::: ::::: :::::::::: ::::: :::::::::::::::: d1q6oa_ 47 DLKAL-YPHKIVLADA-KIADAGKILSRMCFE--ANADWVT-VICCADINTAKGALDV-A 100 query 94 ----DKIIF-----NSISQLERFADKAAGIARGLRLNPQRLGEW---------------D 129 ::::: ::::::::::: ::: :::::: : d1q6oa_ 101 KEFNGDVQIELTGYWTWEQAQQWRD--AGI-GQVVYH-------RSRDAQAAGVAWGEAD 150 query 130 VPKVERVMDRI--NGFMIHNNCENKDFGL---FDRMLGEIEERFGALIARVDWVSLGGGI 184 ::::::::: :::::: ::::: ::::: ::::::: d1q6oa_ 151 ITAIKRLSD--MGFKVTVT----------GGLALEDL----PLFKG--IPIHVFI----- 187 query 185 HFTGDD--------YPVDAFSARLRAFSDRYGVQIYLEPGEASITKSTTLEVTVLDTLYN 236 ::::::::::::::::: d1q6oa_ 188 ------AGRSIRDAASPVEAARQFKRSIAEL----------------------------- 212 query 237 KNLAIVDSSIEAHMLDLLIYRETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVG 296 d1q6oa_ 213 ------------------------------------------------------------ 213 query 297 DRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVREFTYADYEQSLS- 348 d1q6oa_ 213 ----------------------------------------------------W 213 TMalign alignment (TM-score: 0.43 Raw score:149.47) query 1 MIETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCF---ATWSVFDLMRDYMDGTTS 57 ::::::::::: :::::::::::::::::: d1q6oa_ 1 ----------------------------LPMLQVALDNQTMDSAYETTRLIAEEVDIIEV 32 query 58 -S--S----LFEVRLGRERFG-KETHAYSVAY-G-DNEIDEVVS-HADKIIFN--S-ISQ 103 : : :::::::::::: :::::::::: : ::::::::: :::::::: : ::: d1q6oa_ 33 GTILCVGEGVRAVRDLKALYPHKIVLADAKIADAGKILSRMCFEANADWVTVICCADINT 92 query 104 LERFADKAA--GIARGLRLNPQRLGEWDVPKVERVMD-RINGFMIHNNCE-NK--DFGLF 157 ::::::::: ::::::::: : :::::::::::: :::::::::::: :: ::: d1q6oa_ 93 AKGALDVAKEFNGDVQIELT---G-YWTWEQAQQWRDAGIGQVVYHRSRDAQAAG--VAW 146 query 158 DRMLGEIEERFGALIARVDWVSLGGGIHFTGDDYPVDAFSARLRAFSDRYGVQIYLEPGE 217 : ::::::::::::::::::::::::: : ::::::::: :: :::::: d1q6oa_ 147 -G--EADITAIKRLSDMGFKVTVTGGLAL-----E---DLPLFKGIP----IH-VFIAGR 190 query 218 ASITKST----------------TLEVTVLDTLYNKNLAIVDSSIEAHMLDLLIYRETAK 261 ::::::: d1q6oa_ 191 SIRDAASPVEAARQFKRSIAELW------------------------------------- 213 query 262 VLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMP 321 d1q6oa_ 214 ------------------------------------------------------------ 214 query 322 AIAIRELDGSVRTVREFTYADYEQSLS 348 d1q6oa_ 214 --------------------------- 214 HHsearch alignment (Probability: 0.38 E-value:0.02) query 16 RNMERIAHVREKSGAKALLALKCFATWSV-FDLMRDYMDGTTSSS--------LFEVRLG 66 :::::::::: ::::::::::::::::: ::::::::::::::: ::::::: d1q6oa_ 43 RAVRDLKALY--PHKIVLADAKIADAGKILSRMCFEANADWVTVICCADINTAKGALDVA 100 query 67 RERFGKETHAYSVAYGDNEIDEVVSHADKIIF-------------NSISQLERFADKAAG 113 :::::::::::::::::::::::::::::::: :::::::::::: :: d1q6oa_ 101 KEFNGDVQIELTGYWTWEQAQQWRDAGIGQVVYHRSRDAQAAGVAWGEADITAIKRL-SD 159 query 114 IARGLRLNPQRLGEWDVPKVERVMDRINGFMIHNNCENKDFGLFDRMLGEIEERFGAL 171 :::::::::::::::::::::::::::: ::::::::::::::::::::::::: d1q6oa_ 160 MGFKVTVTGGLALEDLPLFKGIPIHVFI-----AGRSIRDAASPVEAARQFKRSIAEL 212
Intermediate <-- 1.546 --> HitDALI alignment (Z-score: 14.5 Raw score:1402.60) d1q6oa_ 1 lPMLQVALDNQTMD------SAYETTRLIAEEVDIIEVGT--------ilcVGEG----- 41 ::::::::::::: :::::::::::::::::::: :::: d1jnda1 1 -SNLVCYYDSSSYTreglgkLLNPDLEIALQFCSHLVYGYaglrgenlqaySMNEnldiy 59 d1q6oa_ 42 vRAVRDLKALY---PHKIVLADAK-----------------------iadAGKILSRMCF 75 :::::::::: :::::::::: :::::::::: d1jnda1 60 kHQFSEVTSLKrkyPHLKVLLSVGgdhdidpdhpnkyidllegekvrqigFIRSAYELVK 119 d1q6oa_ 76 EANADWVTVICC--------------------aDINTAKGALDVAKEFNGDVQIELT--G 113 :::::::::::: :::::::::::::::::::::::: : d1jnda1 120 TYGFDGLDLAYQfpknkprkvivdphaalhkeqFTALVRDVKDSLRADGFLLSLTVLpnV 179 d1q6oa_ 114 YWTWE-QAQQWRdAGIGQVVYHRSRdAQAA--------GVAWGE------------ADIT 152 ::::: :::::: :::::::::::: :::: :::::: :::: d1jnda1 180 NSTWYfDIPALN-GLVDFVNLATFD-FLTParnpeeadYSAPIYhpdgskdrlahlNADF 237 d1q6oa_ 153 AIKRLSDMGF---KVTVTGG-----lALEDLPLFKGIPIHVFIAGRsIRDAAS------- 197 :::::::::: ::::::: :::::::::::::::::::: :::::: d1jnda1 238 QVEYWLSQGFpsnKINLGVAtddpdsASNKAAYARVKNLGGVALFD-LSYDDFrgqcsgd 296 d1q6oa_ 198 PVEAARQFKRSIaelw 213 :::::::::::: d1jnda1 297 KYPILRAIKYRL---- 308 FAST alignment (Normalized score: 9.07 Raw score:2324.00) d1q6oa_ 1 LPMLQVALDN----------QTMDSAYETTRLIAEEVDIIEVGTILCVGEGV-------- 42 ::::::::: :::::: :::::::::::: d1jnda1 1 -SNLVCYYDSSSYTREGLGKLLNPDL----EIALQFCSHLVY----------GYAGLRGE 45 d1q6oa_ 43 ---------------RAVRDLK---ALYPHKIVLADAKIAD------------------- 65 ::::::: ::::::::::: d1jnda1 46 NLQAYSMNENLDIYKHQFSEVTSLKRKYPHLKVLLS-----VGGDHDIDPDHPNKYIDLL 100 d1q6oa_ 66 ---------AGKILSRMCFEANADWVTVICCA-----------------------DINTA 93 :::::::::::::::::::: ::::: d1jnda1 101 EGEKVRQIGFIRSAYELVKTYGFDGLDLA---YQFPKNKPRKVIVDPHAALHKEQFTALV 157 d1q6oa_ 94 KGALDVAKEFNGDVQIELTGYWTWE-----QAQQWRDAGIGQVVYHRSRDAQAAGVAWGE 148 ::::::::::::::::::::::: ::::::: ::::::::: d1jnda1 158 RDVKDSLRADGFLLSLTVLPNVN--STWYFDIPALNG-LVDFVNLAT------------- 201 d1q6oa_ 149 --------------------------------ADITAIKRLSDMGF---KVTVTGGL--- 170 :::::::::::::: :::: d1jnda1 202 FDFLTPARNPEEADYSAPIYHPDGSKDRLAHLNADFQVEYWLSQGFPSNKINL----GVA 257 d1q6oa_ 171 ------ALEDLPLFKGIPIHVFIAGR--SIRDAASP----------VEAARQFKRSIAEL 212 ::::::::::::::::: ::::: :::::::::: d1jnda1 258 TDDPDSASNKAAYARVKNLGGVA---LFDLSYD---DFRGQCSGDKYPILRAIKYR---- 307 d1q6oa_ 213 W- 213 d1jnda1 308 -L 308 TMalign alignment (TM-score: 0.77 Raw score:164.98) d1q6oa_ 1 LPMLQVALDNQ-TM-----DSAYETTRLIAEEVDIIEVGTIL---------CVG--EGV- 42 :::::::::: :: ::::::::::::::::::::::: ::: ::: d1jnda1 1 -SNLVCYYDSSSYTREGLGKLLNPDLEIALQFCSHLVYGYAGLRGENLQAYSMNENLDIY 59 d1q6oa_ 43 -RAVRDLKALYP--H-KIVLADAKI-----------A--D-------A--GKILSRMCFE 76 ::::::::::: : ::::::::: : : : :::::::::: d1jnda1 60 KHQFSEVTSLKRKYPHLKVLLSVGGDHDIDPDHPNKYIDLLEGEKVRQIGFIRSAYELVK 119 d1q6oa_ 77 -ANADWVTV-ICC----------------A--DI-NTAKGALDVAKEFNGDVQIELT-GY 114 :::::::: ::: : :: :::::::::::::::::::::: :: d1jnda1 120 TYGFDGLDLAYQFPKNKPRKVIVDPHAALHKEQFTALVRDVKDSLRADGFLLSLTVLPNV 179 d1q6oa_ 115 WTWEQAQQ-WRDAGIGQVVYHRSRDAQA--A----G-VAWGE------------ADITAI 154 :::::::: ::::::::::::::::::: : : ::::: :::::: d1jnda1 180 NSTWYFDIPALNGLVDFVNLATFDFLTPARNPEEADYSAPIYHPDGSKDRLAHLNADFQV 239 d1q6oa_ 155 KRLSD-MGF--KVTVTGGLA-L-ED--L-PLFKGIPIHVFIA-G--RSIRDAA---SPVE 200 ::::: ::: ::::::::: : :: : ::::::::::::: : ::::::: :::: d1jnda1 240 EYWLSQGFPSNKINLGVATDDPDSASNKAAYARVKNLGGVALFDLSYDDFRGQCSGDKYP 299 d1q6oa_ 201 AARQFKRSIAELW 213 ::::::::: d1jnda1 300 ILRAIKYRL---- 308 HHsearch alignment (Probability: 0.05 E-value:0.08) d1q6oa_ 41 GVRAVRDLKALYPHKIVLADA----------------K-IADAGK------ILSRMCFEA 77 ::::::::::::::::::::: : :::::: ::::::::: d1jnda1 62 QFSEVTSLKRKYPHLKVLLSVGGDHDIDPDHPNKYIDLLEGEKVRQIGFIRSAYELVKTY 121 d1q6oa_ 78 NADWVTVICCAD--------------------INTAKGALDVAKEFNGDVQIELTGYWTW 117 :::::::::::: :::::::::::::::::::::::::::: d1jnda1 122 GFDGLDLAYQFPKNKPRKVIVDPHAALHKEQFTALVRDVKDSLRADGFLLSLTVLPNVNS 181 d1q6oa_ 118 EQAQ--QWRDAGIGQVVYHR 135 :::: :::::::::::::: d1jnda1 182 TWYFDIPALNGLVDFVNLAT 201