Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T515_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1i4na_ | Indole-3-glycerophosphate synthase, IPGS | Ribulose-phoshate binding barrel | TIM beta/alpha-barrel | α/β |
| Hit | d1eswa_ | Amylomaltase MalQ | (Trans)glycosidases | TIM beta/alpha-barrel | α/β |
Query <-- 1.586 --> IntermediateDALI alignment (Z-score: 10.4 Raw score:1010.00) query 1 -----------mietpyylidkakltrnmeriahvrekSGAKALLALKC----------f 39 ::::::::::: d1i4na_ 1 rrlweiveakkkdileidgenlivqrrnhrflevlsgkERVKIIAEFKKaspsagdinad 60 query 40 aTWSV-FDLMRDYMDGTTSSS--------LFEVRLGRERFGKETHAYSVAYGDNEIDEVV 90 :::: ::::::::::::::: ::::::::::::::::::::::::::::::: d1i4na_ 61 aSLEDfIRMYDELADAISILTekhyfkgdPAFVRAARNLTCRPILAKDFYIDTVQVKLAS 120 query 91 S-HADKIIFNS----ISQLERFADKAA--GIARGLRLNPQrlgEWDVpkVERVMdrINGF 143 : ::::::::: :::::::::::: ::::::::::: :::: ::::: :::: d1i4na_ 121 SvGADAILIIAriltAEQIKEIYEAAEelGMDSLVEVHSR--eDLEK-vFSVIR--PKII 175 query 144 MIHNNcenkdfglFDRMLGEIEERFgalIARVdWVSLGGGIHFTgddypvdAFSARLRAF 203 ::::: :::::::::::: :::: ::::::::::: ::::::::: d1i4na_ 176 GINTR-dldtfeiKKNVLWELLPLV---PDDT-VVVAESGIKDP-------RELKDLRGK 223 query 204 SdrygvqIYLEPGEASITKSTtlevtvldtlynknlaivdssieahmldlliyretakvl 263 : :::::::::::::: d1i4na_ 224 V------NAVLVGTSIMKAEN--------------------------------------- 238 query 264 pnegshsymicgksclagdvfgefrfaeelkvgdrisfqdaagytmvkknwfngvkmpai 323 d1i4na_ 239 ------------------------------------------------------------ 239 query 324 aireldgsvrtvreftyadyeqsls 348 d1i4na_ 239 ------------prrfleemrawse 251 FAST alignment (Normalized score: 5.64 Raw score:1667.00) query 1 MIETPYYLIDKAKLTRNMERIAHVREKS-------------------------------- 28 d1i4na_ 1 ----------------------------RRLWEIVEAKKKDILEIDGENLIVQRRNHRFL 32 query 29 -------GAKALLALKCFATWS------------------VFDLMRDYMDGTTS------ 57 :::::::: :::::::::::::: d1i4na_ 33 EVLSGKERVKIIAEF-------KKASPSAGDINADASLEDFIRMYDELADAISILTEKHY 85 query 58 --SSLFEVRLGRERFGKETHAYSVA--YGDNEIDEVVS-HADKIIF----NSISQLERFA 108 ::::::::::::::::::::: ::::::::::: ::::::: :::::::::: d1i4na_ 86 FKGDPAFVRAARNLTCRPILAKD--FYIDTVQVKLASSVGADAILIIARILTAEQIKEIY 143 query 109 DKA--AGIARGLRLNPQRLGEW----DVPKVERVMD--RINGFMIHNNCENKDFGL---- 156 ::: ::::::::: ::::::: :::::::: d1i4na_ 144 EAAEELGMDSLVEV--------HSREDLEKVFS---VIRPKIIGIN----------TRDL 182 query 157 -----FDRMLGEIEERFGALIARV----DWVSLGGGIHFTGDDYPVDAFSARLRAFSDRY 207 ::::::::::: :::::::::: :::::::::: d1i4na_ 183 DTFEIKKNVLWELLPL--------VPDDTVVVAESGIK-------DPRELKDLRG----- 222 query 208 GVQ--IYLEPGEASITKSTTLEVTVLDTLYNKNLAIVDSSIEAHMLDLLIYRETAKVLPN 265 ::::::::: d1i4na_ 223 ---KVNAVLVGTSI---------------------------------------------- 233 query 266 EGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAI 325 d1i4na_ 234 ------------------------------------------------------------ 234 query 326 RELDGSVRTVREFTYADYEQSLS------------------ 348 d1i4na_ 234 -----------------------MKAENPRRFLEEMRAWSE 251 TMalign alignment (TM-score: 0.41 Raw score:143.58) query 1 ----------------------------------------------------------MI 2 d1i4na_ 1 RRLWEIVEAKKKDILEIDGENLIVQRRNHRFLEVLSGKERVKIIAEFKKASPSAGDIN-- 58 query 3 ETPYYLIDKAKLTRNMERIAHVREKSGAKALLALK---CFATWSVFDLMRDYM---DGTT 56 :::::::::::::: :::::::::: ::::::::::::::: :::: d1i4na_ 59 ----------ADASLEDFIRMYDE-LADAISILTEKHYFKGDPAFVRAARNLTCRPILAK 107 query 57 SSSLF-EVRLGRERFGKETHAYS-VAYGDNEIDEVVS-H-----ADKIIFNSISQLERFA 108 ::::: ::::::::::::::::: ::::::::::::: : :::::::::::::::: d1i4na_ 108 DFYIDTVQVKLASSVGADAILIIARILTAEQIKEIYEAAEELGMDSLVEVHSREDLEKVF 167 query 109 DKAAGIARGLRLNP---QRLGEWDVPKVERVMDR-INGFMIHNNCENKDFGLFDRMLGEI 164 :::::::::::::: ::::::::::::::::: ::::::::: : : :: : d1i4na_ 168 SVIRPKIIGINTRDLDTFEIKKNVLWELLPLVPDDTVVVAESGI--------K-D-PR-E 216 query 165 EERFGALIARVDWVSLGGGIHFTGDDYPVDAFSARLRAFSDRYGVQIYLEPGEASITKST 224 :: :: ::::::::: ::::: : ::::::::::::::: : d1i4na_ 217 LK--DL-RGKVNAVLV-GTSIM-K-AENPRRFLEEMRAWS-E------------------ 251 query 225 TLEVTVLDTLYNKNLAIVDSSIEAHMLDLLIYRETAKVLPNEGSHSYMICGKSCLAGDVF 284 d1i4na_ 252 ------------------------------------------------------------ 252 query 285 GEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVREFTYADYE 344 d1i4na_ 252 ------------------------------------------------------------ 252 query 345 QSLS 348 d1i4na_ 252 ---- 252 HHsearch alignment (Probability: 0.22 E-value:0.02) query 57 SSSLFEVRLGRERFGKETHAYSVAYGDNEIDEVVSHADKIIFN------SISQLERFADK 110 ::::::::::::::::::::::::::::::::::::::::::: ::::::::::: d1i4na_ 110 YIDTVQVKLASSVGADAILIIARILTAEQIKEIYEAAEELGMDSLVEVHSREDLEKVFSV 169 query 111 AAGIARGLRLNPQRLGEWDVPKVERVMDRI-NGFMIHNNCENKDFGLFDRM 160 :::::::::::::::::::::::::::::: :::::::::::::::::::: d1i4na_ 170 IRPKIIGINTRDLDTFEIKKNVLWELLPLVPDDTVVVAESGIKDPRELKDL 220
Intermediate <-- 1.160 --> HitDALI alignment (Z-score: 8.5 Raw score:1118.00) d1i4na_ 1 rrlweiveakkkdileidgenlivqrrnhrfLEVLSgkervKIIAEFKKAspsagdINAD 60 ::::: ::::::::: :::: d1eswa_ 1 -------------------------------MELPR-----AFGLLLHPT------SLPG 18 d1i4na_ 61 --------aSLEDFIRMYDEL-ADAISILTEK-----HYFK------------------- 87 :::::::::::: :::::::::: :::: d1eswa_ 19 pygvgvlgrEARDFLRFLKEAgGRYWQVLPLGptgygDSPYqsfsafagnpylidlrpla 78 d1i4na_ 88 ------------------------------------------------------------ 88 d1eswa_ 79 ergyvrledpgfpqgrvdygllyawkwpalkeafrgfkekaspeereafaafrereawwl 138 d1i4na_ 88 ----------------------------------------------------gdpafVRA 95 ::: d1eswa_ 139 edyalfmalkgahgglpwnrwplplrkreekalreaksalaeevafhaftqwlffrqWGA 198 d1i4na_ 96 ARNLTC---RPILAKDFYI----------------------------------------- 111 :::::: :::::::::: d1eswa_ 199 LKAEAEalgIRIIGDMPIFvaedsaevwahpewfhldeegrptvvagvppdyfsetgqrw 258 d1i4na_ 112 -----------------DTVQVKLASsVGADAILI-IARILTA----------------- 136 ::::::::: :::::::: ::::::: d1eswa_ 259 gnplyrwdvleregfsfWIRRLEKAL-ELFHLVRIdHFRGFEAyweipascptavegrwv 317 d1i4na_ 137 -EQIKEIYEAAE--ELGMDSLVEVHSREdLEKVFSVIR--PKIIGINTrdldtfeIKKN- 190 ::::::::::: :::::::::::::: ::::::::: :::::::: :::: d1eswa_ 318 kAPGEKLFQKIQevFGEVPVLAEDLGVI-TPEVEALRDrfGLPGMKVL-------QFAFd 369 d1i4na_ 191 -----vLWELLplVPDDTVVVAESG----------------------------------- 210 ::::: :::::::::::: d1eswa_ 370 dgmenpFLPHN--YPAHGRVVVYTGthdndttlgwyrtatphekafmaryladwgitfre 427 d1i4na_ 211 --ikDPRELKD-LRGKVNAVLVG-TSIM----------------------kaENPR-RFL 243 ::::::: ::::::::::: :::: :::: ::: d1eswa_ 428 eeevPWALMHLgMKSVARLAVYPvQDVLalgsearmnypgrpsgnwawrllpGELSpEHG 487 d1i4na_ 244 EEMRAWSE----- 251 :::::::: d1eswa_ 488 ARLRAMAEaterl 500 FAST alignment (Normalized score: 4.54 Raw score:1609.00) d1i4na_ 1 RRLWEIVEAKKKDILEIDGENLIVQRRNHRFLEVLSGKE---RVKIIAEFKKASPSAGDI 57 ::::::::: d1eswa_ 1 ---------------------------------------MELPRAFGLLLH--------- 12 d1i4na_ 58 NADA---------------SLEDFIRMYDE-LADAISILTEKHYFKG------------- 88 ::::::::::: ::::::: d1eswa_ 13 ----PTSLPGPYGVGVLGREARDFLRFLKEAGGRYWQV---------LPLGPTGYGDSPY 59 d1i4na_ 89 ------------------------------------------------------------ 89 d1eswa_ 60 QSFSAFAGNPYLIDLRPLAERGYVRLEDPGFPQGRVDYGLLYAWKWPALKEAFRGFKEKA 119 d1i4na_ 89 ------------------------------------------------------------ 89 d1eswa_ 120 SPEEREAFAAFREREAWWLEDYALFMALKGAHGGLPWNRWPLPLRKREEKALREAKSALA 179 d1i4na_ 89 ----------------DPAFVRAARNLTCRPILAKDFYI--------------------- 111 :::::::::: ::::::::::: d1eswa_ 180 EEVAFHAFTQWLFFRQWGALKAEAEA-LGIRIIGDMPI-FVAEDSAEVWAHPEWFHLDEE 237 d1i4na_ 112 --------------------------------------DTVQVKLASSVGADAILIIARI 133 :::::::::: ::::::: d1eswa_ 238 GRPTVVAGVPPDYFSETGQRWGNPLYRWDVLEREGFSFWIRRLEKALE-LFHLVRI---- 292 d1i4na_ 134 LTAE---------------------------QIKEIYEAAEELGM-----DSLVEVH--- 158 ::::::::::: ::::::: d1eswa_ 293 ----DHFRGFEAYWEIPASCPTAVEGRWVKAPGEKLFQKIQE---VFGEVPVLAEDLGVI 345 d1i4na_ 159 SREDLEKVFSVIRPKIIGINTRDLDTFEIKKNVLWE------------LLPLVPDDT--V 204 ::::::::: ::: ::::::: ::::::: : d1eswa_ 346 TPEVEALRD-RFG-LPGMKVL---------------QFAFDDGMENPFLPHNYPA--HGR 386 d1i4na_ 205 VVAESGIK------------------------------------------DPRELKDLRG 222 ::: ::::::: d1eswa_ 387 VVV-----YTGTHDNDTTLGWYRTATPHEKAFMARYLADWGITFREEEEVPWALMHL--- 438 d1i4na_ 223 ----KVNAVL-VGTSIMKAE------------------------------NPRRFLEEMR 247 :::::: ::::: :::::::::: d1eswa_ 439 GMKSVARLAVYPVQDV----LALGSEARMNYPGRPSGNWAWRLLPGELSPEHGARLRAMA 494 d1i4na_ 248 AWSE---- 251 :: d1eswa_ 495 EA--TERL 500 TMalign alignment (TM-score: 0.63 Raw score:159.05) d1i4na_ 1 RRLWEIVEAKKKDILEIDGENLIVQRRNHRFLEVLSGKERVKIIAEFKKASPSAGDIN-- 58 :: ::: ::::::::: ::: d1eswa_ 1 -------------------------------ME-LPR----AFGLLLHPT-----SLPGP 19 d1i4na_ 59 -ADA----SLEDFIRMYDEL-ADAISIL-TEKH----YF--K-----GD----------- 89 ::: :::::::::::: ::::::: :::: :: : :: d1eswa_ 20 YGVGVLGREARDFLRFLKEAGGRYWQVLPLGPTGYGDSPYQSFSAFAGNPYLIDLRPLAE 79 d1i4na_ 90 ------------------------------------------------------------ 90 d1eswa_ 80 RGYVRLEDPGFPQGRVDYGLLYAWKWPALKEAFRGFKEKASPEEREAFAAFREREAWWLE 139 d1i4na_ 90 ----------------------------------------------------PA-FVRAA 96 :: ::::: d1eswa_ 140 DYALFMALKGAHGGLPWNRWPLPLRKREEKALREAKSALAEEVAFHAFTQWLFFRQWGAL 199 d1i4na_ 97 RNLTC---RPILAKDFYI------------------------------------------ 111 ::::: :::::::::: d1eswa_ 200 KAEAEALGIRIIGDMPIFVAEDSAEVWAHPEWFHLDEEGRPTVVAGVPPDYFSETGQRWG 259 d1i4na_ 112 ---------------DT-VQVKLASSVGADAILIIARILTA------------------- 136 :: ::::::: ::::::::::::::: d1eswa_ 260 NPLYRWDVLEREGFSFWIRRLEKAL-ELFHLVRIDHFRGFEAYWEIPASCPTAVEGRWVK 318 d1i4na_ 137 EQIKEIYEAAE-EL-GMDSLVEVHSREDLEKVFSVIR-PKIIGINTRDLDTFEIKKNV-- 191 ::::::::::: :: :::::::::::: ::::::::: ::::::::: ::::: d1eswa_ 319 APGEKLFQKIQEVFGEVPVLAEDLGVI-TPEVEALRDRFGLPGMKVL------QFAFDDG 371 d1i4na_ 192 LWELL--PLVPDDTVVVAESG------IK------------------------------- 212 ::::: :::::::::::::: :: d1eswa_ 372 MENPFLPHNYPAHGRVVVYTGTHDNDTTLGWYRTATPHEKAFMARYLADWGITFREEEEV 431 d1i4na_ 213 DPRELKDL-RGKVNAVLVGTS-I---------------------MKA--ENPRRFLEEMR 247 :::::::: :::::::::::: : ::: ::::::::::: d1eswa_ 432 PWALMHLGMKSVARLAVYPVQDVLALGSEARMNYPGRPSGNWAWRLLPGELSPEHGARLR 491 d1i4na_ 248 AWS--E--- 251 ::: : d1eswa_ 492 AMAEATERL 500 HHsearch alignment (Probability: 0.01 E-value:0.16) d1i4na_ 125 DAILIIARILT--AEQIKEIYEAAEELGMDSL 154 ::::::::::: ::::::::::::::::::: d1eswa_ 333 GEVPVLAEDLGVITPEVEALRDRFGLPGMKVL 364