Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T515_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1i4na_ | Indole-3-glycerophosphate synthase, IPGS | Ribulose-phoshate binding barrel | TIM beta/alpha-barrel | α/β |
| Hit | d1adoa_ | Fructose-1,6-bisphosphate aldolase | Aldolase | TIM beta/alpha-barrel | α/β |
Query <-- 1.586 --> IntermediateDALI alignment (Z-score: 10.4 Raw score:1010.00) query 1 -----------mietpyylidkakltrnmeriahvrekSGAKALLALKC----------f 39 ::::::::::: d1i4na_ 1 rrlweiveakkkdileidgenlivqrrnhrflevlsgkERVKIIAEFKKaspsagdinad 60 query 40 aTWSV-FDLMRDYMDGTTSSS--------LFEVRLGRERFGKETHAYSVAYGDNEIDEVV 90 :::: ::::::::::::::: ::::::::::::::::::::::::::::::: d1i4na_ 61 aSLEDfIRMYDELADAISILTekhyfkgdPAFVRAARNLTCRPILAKDFYIDTVQVKLAS 120 query 91 S-HADKIIFNS----ISQLERFADKAA--GIARGLRLNPQrlgEWDVpkVERVMdrINGF 143 : ::::::::: :::::::::::: ::::::::::: :::: ::::: :::: d1i4na_ 121 SvGADAILIIAriltAEQIKEIYEAAEelGMDSLVEVHSR--eDLEK-vFSVIR--PKII 175 query 144 MIHNNcenkdfglFDRMLGEIEERFgalIARVdWVSLGGGIHFTgddypvdAFSARLRAF 203 ::::: :::::::::::: :::: ::::::::::: ::::::::: d1i4na_ 176 GINTR-dldtfeiKKNVLWELLPLV---PDDT-VVVAESGIKDP-------RELKDLRGK 223 query 204 SdrygvqIYLEPGEASITKSTtlevtvldtlynknlaivdssieahmldlliyretakvl 263 : :::::::::::::: d1i4na_ 224 V------NAVLVGTSIMKAEN--------------------------------------- 238 query 264 pnegshsymicgksclagdvfgefrfaeelkvgdrisfqdaagytmvkknwfngvkmpai 323 d1i4na_ 239 ------------------------------------------------------------ 239 query 324 aireldgsvrtvreftyadyeqsls 348 d1i4na_ 239 ------------prrfleemrawse 251 FAST alignment (Normalized score: 5.64 Raw score:1667.00) query 1 MIETPYYLIDKAKLTRNMERIAHVREKS-------------------------------- 28 d1i4na_ 1 ----------------------------RRLWEIVEAKKKDILEIDGENLIVQRRNHRFL 32 query 29 -------GAKALLALKCFATWS------------------VFDLMRDYMDGTTS------ 57 :::::::: :::::::::::::: d1i4na_ 33 EVLSGKERVKIIAEF-------KKASPSAGDINADASLEDFIRMYDELADAISILTEKHY 85 query 58 --SSLFEVRLGRERFGKETHAYSVA--YGDNEIDEVVS-HADKIIF----NSISQLERFA 108 ::::::::::::::::::::: ::::::::::: ::::::: :::::::::: d1i4na_ 86 FKGDPAFVRAARNLTCRPILAKD--FYIDTVQVKLASSVGADAILIIARILTAEQIKEIY 143 query 109 DKA--AGIARGLRLNPQRLGEW----DVPKVERVMD--RINGFMIHNNCENKDFGL---- 156 ::: ::::::::: ::::::: :::::::: d1i4na_ 144 EAAEELGMDSLVEV--------HSREDLEKVFS---VIRPKIIGIN----------TRDL 182 query 157 -----FDRMLGEIEERFGALIARV----DWVSLGGGIHFTGDDYPVDAFSARLRAFSDRY 207 ::::::::::: :::::::::: :::::::::: d1i4na_ 183 DTFEIKKNVLWELLPL--------VPDDTVVVAESGIK-------DPRELKDLRG----- 222 query 208 GVQ--IYLEPGEASITKSTTLEVTVLDTLYNKNLAIVDSSIEAHMLDLLIYRETAKVLPN 265 ::::::::: d1i4na_ 223 ---KVNAVLVGTSI---------------------------------------------- 233 query 266 EGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAI 325 d1i4na_ 234 ------------------------------------------------------------ 234 query 326 RELDGSVRTVREFTYADYEQSLS------------------ 348 d1i4na_ 234 -----------------------MKAENPRRFLEEMRAWSE 251 TMalign alignment (TM-score: 0.41 Raw score:143.58) query 1 ----------------------------------------------------------MI 2 d1i4na_ 1 RRLWEIVEAKKKDILEIDGENLIVQRRNHRFLEVLSGKERVKIIAEFKKASPSAGDIN-- 58 query 3 ETPYYLIDKAKLTRNMERIAHVREKSGAKALLALK---CFATWSVFDLMRDYM---DGTT 56 :::::::::::::: :::::::::: ::::::::::::::: :::: d1i4na_ 59 ----------ADASLEDFIRMYDE-LADAISILTEKHYFKGDPAFVRAARNLTCRPILAK 107 query 57 SSSLF-EVRLGRERFGKETHAYS-VAYGDNEIDEVVS-H-----ADKIIFNSISQLERFA 108 ::::: ::::::::::::::::: ::::::::::::: : :::::::::::::::: d1i4na_ 108 DFYIDTVQVKLASSVGADAILIIARILTAEQIKEIYEAAEELGMDSLVEVHSREDLEKVF 167 query 109 DKAAGIARGLRLNP---QRLGEWDVPKVERVMDR-INGFMIHNNCENKDFGLFDRMLGEI 164 :::::::::::::: ::::::::::::::::: ::::::::: : : :: : d1i4na_ 168 SVIRPKIIGINTRDLDTFEIKKNVLWELLPLVPDDTVVVAESGI--------K-D-PR-E 216 query 165 EERFGALIARVDWVSLGGGIHFTGDDYPVDAFSARLRAFSDRYGVQIYLEPGEASITKST 224 :: :: ::::::::: ::::: : ::::::::::::::: : d1i4na_ 217 LK--DL-RGKVNAVLV-GTSIM-K-AENPRRFLEEMRAWS-E------------------ 251 query 225 TLEVTVLDTLYNKNLAIVDSSIEAHMLDLLIYRETAKVLPNEGSHSYMICGKSCLAGDVF 284 d1i4na_ 252 ------------------------------------------------------------ 252 query 285 GEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVREFTYADYE 344 d1i4na_ 252 ------------------------------------------------------------ 252 query 345 QSLS 348 d1i4na_ 252 ---- 252 HHsearch alignment (Probability: 0.22 E-value:0.02) query 57 SSSLFEVRLGRERFGKETHAYSVAYGDNEIDEVVSHADKIIFN------SISQLERFADK 110 ::::::::::::::::::::::::::::::::::::::::::: ::::::::::: d1i4na_ 110 YIDTVQVKLASSVGADAILIIARILTAEQIKEIYEAAEELGMDSLVEVHSREDLEKVFSV 169 query 111 AAGIARGLRLNPQRLGEWDVPKVERVMDRI-NGFMIHNNCENKDFGLFDRM 160 :::::::::::::::::::::::::::::: :::::::::::::::::::: d1i4na_ 170 IRPKIIGINTRDLDTFEIKKNVLWELLPLVPDDTVVVAESGIKDPRELKDL 220
Intermediate <-- 1.420 --> HitDALI alignment (Z-score: 11.4 Raw score:1295.60) d1i4na_ 1 rrlweiveakkkdileidgenlivqrRNHRFLEV-LSGKervKIIAEF-KKASPsaGDIN 58 :::::::: :::: :::::: ::::: :::: d1adoa_ 1 -------------phshpaltpeqkkELSDIAHRiVAPG---KGILAAdESTGS-iAKRL 43 d1i4na_ 59 A-------daSLEDFIRMYDEL-------ADAISILTekhyfkgdpAFVRA-------AR 97 : :::::::::::: :::::::: ::::: :: d1adoa_ 44 QsigtenteeNRRFYRQLLLTAddrvnpcIGGVILFH---------ETLYQkaddgrpFP 94 d1i4na_ 98 NLTC---RPILAKDFY---------------IDTV---QVKLASSVGADAILIIARI--- 133 :::: ::::::::: :::: ::::::::::::::::::: d1adoa_ 95 QVIKskgGVVGIKVDKgvvplagtngetttqGLDGlseRCAQYKKDGADFAKWRCVLkig 154 d1i4na_ 134 ----------LTAEQIKEIYEAAEELGMDSLVEVH---------------SREDLEKVFS 168 ::::::::::::::::::::::::: :::::::::: d1adoa_ 155 ehtpsalaimENANVLARYASICQQNGIVPIVEPEilpdgdhdlkrcqyvTEKVLAAVYK 214 d1i4na_ 169 VIR-------pKIIGINT-------rdldtfeiKKNVLWELLP-LVPDDT-VVVAESGIK 212 ::: ::::::: :::::::::: :::::: ::::::::: d1adoa_ 215 ALSdhhiylegTLLKPNMvtpghactqkysheeIAMATVTALRrTVPPAVtGVTFLSGGQ 274 d1i4na_ 213 DPRE-LKDLRGK---------VNAVLVGTSIM--KAEN----------PRRFLEEMRAWS 250 :::: ::::::: ::::::::::: :::: :::::::::::: d1adoa_ 275 SEEEaSINLNAInkcpllkpwALTFSYGRALQasALKAwggkkenlkaAQEEYVKRALAN 334 d1i4na_ 251 ----------------------------e 251 d1adoa_ 335 slacqgkytssgqagaaaseslfisnhay 363 FAST alignment (Normalized score: 7.84 Raw score:2366.00) d1i4na_ 1 RRLWEIVEAKKKDILEIDGENLIVQRRN---------------HRFLEVLSGKE---RVK 42 :::::: ::: d1adoa_ 1 ----------------------------PHSHPALTPEQKKELSDIAHR-----IVAPGK 27 d1i4na_ 43 IIAEFKKASPSAGDINADA---------------------SLEDFIRMYD-------ELA 74 ::::: :::::::::: ::: d1adoa_ 28 GILAA--------------DESTGSIAKRLQSIGTENTEENRRFYRQLLLTADDRVNPCI 73 d1i4na_ 75 DAISILTEKHYFKGDPAFVR--------AARNL---TCRPILAKDFYI------------ 111 ::::: ::::: ::::: :::::::: d1adoa_ 74 GGVIL---------FHETL-YQKADDGRPFPQVIKSKGGVVGIK----VDKGVVPLAGTN 119 d1i4na_ 112 ----------DTVQVKLASSVGADAILIIARIL-----------------TAEQIKEIYE 144 ::::::::::::::::::: :::::::::: d1adoa_ 120 GETTTQGLDGLSERCAQYKKDGADFAKWR----CVLKIGEHTPSALAIMENANVLARYAS 175 d1i4na_ 145 AAEELGMDSLVEVH----------------SREDLEKVFS---VIRP----KIIGINTRD 181 ::::::::::::: :::::::::: :::: ::::: d1adoa_ 176 ICQQNGIVPIVEP-EILPDGDHDLKRCQYVTEKVLAAVYKALSDHHIYLEGTLLKP---- 230 d1i4na_ 182 LDTFEI-----------------KKNVLWELL-PLVPDDT-VVVA-ESGIK----DPREL 217 ::::::::: ::::::: :::: :::: ::::: d1adoa_ 231 ------NMVTPGHACTQKYSHEEIAMATVTALRRTVPPAVTGVTFLSGGQ-SEEEASINL 283 d1i4na_ 218 KDLRGKV-----------NAVLVGTSIMKAE-------------------NPRRFLEEMR 247 :: :::::::::: :::::::::: d1adoa_ 284 NA-----INKCPLLKPWALTFSYGRALQ---ASALKAWGGKKENLKAAQEEYVKRALANS 335 d1i4na_ 248 AWSE------------------------- 251 ::: d1adoa_ 336 LAC-QGKYTSSGQAGAAASESLFISNHAY 363 TMalign alignment (TM-score: 0.66 Raw score:165.91) d1i4na_ 1 ------------RRLWEIVEAKKKDILEIDGENLIVQRRNH-RFLEVLSGKERVKIIAEF 47 ::: :::::::: :::::::: d1adoa_ 1 PHSHPALTPEQK--------------------------KELSDIAHRIVA--PGKGILAA 32 d1i4na_ 48 KKASPSAGDIN------A---D--ASLEDFIRMYDEL---ADAISILTEKHYFKGDPAFV 93 ::::::::::: : : ::::::::::::: :::::::: :::::: d1adoa_ 33 DESTGSIAKRLQSIGTENTEENRRFYRQLLLTADDRVNPCIGGVILFH------ETLYQK 86 d1i4na_ 94 ----RAARNLTC---RPILAKDF----------------YI--DTVQVKLASSVGADAIL 128 :::::::: :::::::: :: ::::::::::::::::: d1adoa_ 87 ADDGRPFPQVIKSKGGVVGIKVDKGVVPLAGTNGETTTQGLDGLSERCAQYKKDGADFAK 146 d1i4na_ 129 IIA-------------R-ILTAEQIKEIYEAAEELGMDSLVEVH---------------- 158 ::: : :::::::: ::::::::::::::::: d1adoa_ 147 WRCVLKIGEHTPSALAIMENANVLAR-YASICQQNGIVPIVEPEILPDGDHDLKRCQYVT 205 d1i4na_ 159 --S-REDLEKVFSVIR-PK-IIGINTR---DLDTFEIK--------K--NVLWELLPLVP 200 : :::::::::::: :: ::::::: :::: : ::::::::::: d1adoa_ 206 EKVLAAVYKALSDHHIYLEGTLLKPNMVTP----GHACTQKYSHEEIAMATVTALRRTVP 261 d1i4na_ 201 DDTVVVAESG--IK-D--PRELKDLR----GK-VN-AVLVGTSIMKA---E--------- 237 :::::::::: :: : :::::::: :: :: ::::::::::: : d1adoa_ 262 PAVTGVTFLSGGQSEEEASINLNAINKCPLLKPWALTFSYGRALQASALKAWGGKKENLK 321 d1i4na_ 238 ----NPRRFLEEMRAWSE------------------------ 251 :::::::::::::: d1adoa_ 322 AAQEEYVKRALANSLACQGKYTSSGQAGAAASESLFISNHAY 363 HHsearch alignment (Probability: 0.04 E-value:0.04) d1i4na_ 115 QVKLASSVGAD-----AILIIARILT--------AEQIKEIYEAAEELGMDSLVEV---- 157 ::::::::::: :::::::::: :::::::::::::::::::::: d1adoa_ 133 RCAQYKKDGADFAKWRCVLKIGEHTPSALAIMENANVLARYASICQQNGIVPIVEPEILP 192 d1i4na_ 158 ---HSREDLE----K-------VFSVIR---------PKII--GINTRDL-DTFEIKKNV 191 ::::::: : :::::: :::: ::::::: ::::::::: d1adoa_ 193 DGDHDLKRCQYVTEKVLAAVYKALSDHHIYLEGTLLKPNMVTPGHACTQKYSHEEIAMAT 252 d1i4na_ 192 LWELLPLVPDDTV-VVAESGIKDPRELK 218 ::::::::::::: :::::::::::::: d1adoa_ 253 VTALRRTVPPAVTGVTFLSGGQSEEEAS 280